Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.6e-40 169.1 93 100.0
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 3.6e-40 167.9 93 98.9
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 1.6e-35 152.5 93 88.2
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 4.0e-31 137.9 93 82.8
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 4.1e-28 127.9 94 74.5
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 1.5e-25 119.4 93 69.9
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.9e-25 119.0 96 68.8
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 5.6e-25 117.5 98 68.4
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 2.1e-24 115.5 93 69.9
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 3.6e-24 114.8 93 71.0
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 8.1e-24 113.6 93 69.9
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 1.8e-23 112.5 95 69.5
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.2e-22 109.8 98 66.3
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.5e-22 109.4 96 65.6
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 2.0e-22 109.0 94 68.1
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 3.4e-22 108.2 95 67.4
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 4.4e-22 107.8 96 66.7
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 9.9e-22 106.7 96 64.6
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 9.9e-22 106.7 94 67.0
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 1.3e-21 106.3 95 67.4
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 1.7e-21 105.9 94 66.0
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 2.2e-21 105.5 94 67.0
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 3.7e-21 104.8 96 67.7
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 4.9e-21 104.4 95 66.3
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 8.4e-21 103.6 95 64.2
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 5.4e-20 100.9 93 64.5
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 7.1e-20 100.5 93 61.3
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 1.2e-19 99.8 95 64.2
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 1.6e-19 99.4 93 63.4
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 2.7e-19 98.6 95 64.2
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 3.5e-19 98.2 101 65.3
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 4.6e-19 97.8 93 60.2
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 4.6e-19 97.8 91 62.6
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 7.8e-19 97.1 96 60.4
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 1.3e-18 96.3 94 59.6
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 2.3e-18 95.5 119 54.6
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 3.0e-18 95.1 93 58.1
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 5.1e-18 94.4 82 64.6
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 6.6e-18 94.0 96 58.3
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 6.6e-18 94.0 96 58.3
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 6.6e-18 94.0 95 62.1
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 1.1e-17 93.2 95 61.1
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 2.5e-17 92.0 84 63.1
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 3.3e-17 91.7 95 56.8
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 5.6e-17 90.9 95 56.8
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 5.6e-17 90.9 95 57.9
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 5.6e-17 90.9 95 57.9
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 7.3e-17 90.5 84 65.5
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 9.6e-17 90.1 95 56.8
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.2e-16 89.7 89 61.8
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 1.6e-16 89.4 95 56.8
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 1.6e-16 89.4 95 56.8
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 1.6e-16 89.4 95 56.8
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 1.6e-16 89.4 95 56.8
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 1.6e-16 89.4 95 56.8
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.6e-16 89.4 87 63.2
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 2.1e-16 89.0 95 56.8
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 2.1e-16 89.0 95 56.8
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 2.1e-16 89.0 95 56.8
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 2.8e-16 88.6 95 58.9
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 3.6e-16 88.2 95 56.8
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 3.6e-16 88.2 95 56.8
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 3.6e-16 88.2 95 56.8
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.6e-16 88.2 85 63.5
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 3.6e-16 88.2 132 47.0
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 4.7e-16 87.8 98 59.2
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 1.1e-15 86.7 83 63.9
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 1.4e-15 86.3 93 61.3
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 1.8e-15 85.9 119 51.3
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.8e-15 85.9 85 60.0
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 3.1e-15 85.1 86 62.8
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 4.0e-15 84.7 93 54.8
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 5.2e-15 84.3 60 76.7
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 5.2e-15 84.3 93 54.8
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 5.2e-15 84.3 98 58.2
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 8.9e-15 83.6 84 63.1
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 2.0e-14 82.4 94 60.6
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 2.0e-14 82.4 86 55.8
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 3.4e-14 81.6 84 59.5
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 3.4e-14 81.6 84 59.5
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 4.4e-14 81.3 51 80.4
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 5.8e-14 80.9 85 56.5
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 7.6e-14 80.5 79 62.0
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 9.9e-14 80.1 83 59.0
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 1.3e-13 79.7 93 53.8
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 1.7e-13 79.3 83 57.8
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 2.9e-13 78.6 64 68.8
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 2.9e-13 78.6 82 61.0
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 2.9e-13 78.6 86 62.8
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 8.4e-13 77.0 82 58.5
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 1.4e-12 76.3 95 53.7
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 3.2e-12 75.1 88 59.1
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 5.4e-12 74.3 87 57.5
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 9.3e-12 73.6 94 51.1
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 9.3e-12 73.6 83 60.2
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 1.2e-11 73.2 51 74.5
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 1.6e-11 72.8 84 54.8
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 1.0e-10 70.1 81 56.8
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 3.0e-10 68.6 93 46.2
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 5.1e-10 67.8 84 52.4
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 6.6e-10 67.4 53 67.9
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 5.6e-09 64.3 95 44.2
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 9.6e-09 63.5 95 44.2
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 9.6e-09 63.5 95 44.2
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 9.6e-09 63.5 105 41.0
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 2.1e-08 62.4 65 53.8
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 2.1e-08 62.4 95 43.2
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 2.1e-08 62.4 95 43.2
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 2.1e-08 62.4 65 53.8
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 2.1e-08 62.4 68 52.9
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 2.8e-08 62.0 95 43.2
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 2.8e-08 62.0 106 43.4
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 2.8e-08 62.0 106 43.4
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 2.8e-08 62.0 106 43.4
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 3.6e-08 61.6 95 43.2
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 3.6e-08 61.6 102 41.2
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 3.6e-08 61.6 89 42.7
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.6e-08 61.6 106 43.4
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 4.8e-08 61.2 85 44.7
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 4.8e-08 61.2 68 52.9
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 4.8e-08 61.2 95 43.2
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 6.2e-08 60.8 89 43.8
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 8.1e-08 60.5 102 46.1
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 8.1e-08 60.5 109 44.0
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 8.1e-08 60.5 74 48.6
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 1.1e-07 60.1 94 45.7
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 1.4e-07 59.7 88 42.0
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 1.8e-07 59.3 98 43.9
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 1.8e-07 59.3 89 47.2
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.8e-07 59.3 65 49.2
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 1.8e-07 59.3 103 40.8
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 2.4e-07 58.9 97 41.2
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 2.4e-07 58.9 66 48.5
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.4e-07 58.9 74 48.6
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 3.1e-07 58.5 63 54.0
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 4.0e-07 58.2 85 47.1
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 4.0e-07 58.2 105 39.0
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 4.0e-07 58.2 99 39.4
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 5.3e-07 57.8 84 42.9
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 5.3e-07 57.8 93 43.0
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 6.9e-07 57.4 92 40.2
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 9.0e-07 57.0 84 42.9
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 9.0e-07 57.0 87 44.8
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 9.0e-07 57.0 93 40.9
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 9.0e-07 57.0 84 42.9
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 1.2e-06 56.6 51 56.9
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 1.2e-06 56.6 97 40.2
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 1.5e-06 56.2 107 39.3
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 1.5e-06 56.2 102 42.2
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 2.0e-06 55.8 85 44.7
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 2.0e-06 55.8 47 61.7
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 2.0e-06 55.8 47 61.7
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 2.0e-06 55.8 89 42.7
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.6e-06 55.5 78 43.6
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 2.6e-06 55.5 98 42.9
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 2.6e-06 55.5 73 47.9
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 3.4e-06 55.1 97 39.2
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 3.4e-06 55.1 101 44.6
ATR0705G084 Amborella trichopoda HOM05D007429 ORTHO05D003505 4.4e-06 54.7 89 44.9
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 4.4e-06 54.7 84 45.2
HPP92_009091 Vanilla planifolia HOM05D007429 ORTHO05D003505 4.4e-06 54.7 45 68.9
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 5.8e-06 54.3 84 45.2
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 5.8e-06 54.3 86 46.5
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 5.8e-06 54.3 93 40.9
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 7.6e-06 53.9 82 42.7
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 7.6e-06 53.9 91 42.9
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 9.9e-06 53.5 83 42.2
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 9.9e-06 53.5 83 41.0


User provided reference genes

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