Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.3e-81 303.5 141 100.0
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.9e-78 294.7 141 95.7
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.4e-72 274.2 130 95.4
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 3.2e-56 221.9 164 64.6
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 5.3e-43 177.9 137 57.7
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.3e-41 173.3 163 52.8
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 4.9e-41 171.4 163 51.5
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 8.4e-41 170.6 159 49.7
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 8.4e-41 170.6 137 54.7
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 1.9e-40 169.5 131 57.3
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 3.2e-40 168.7 164 48.8
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 4.2e-40 168.3 130 56.9
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 5.5e-40 167.9 130 56.9
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 9.3e-40 167.2 131 56.5
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 1.2e-39 166.8 137 54.0
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 2.1e-39 166.0 164 50.6
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 2.1e-39 166.0 137 54.0
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 2.7e-39 165.6 163 49.7
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 2.7e-39 165.6 164 47.0
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 2.7e-39 165.6 164 48.8
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 3.5e-39 165.2 137 52.6
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 4.6e-39 164.9 164 48.2
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 4.6e-39 164.9 131 55.0
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 6.0e-39 164.5 131 56.5
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.0e-38 163.7 131 55.0
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.0e-38 163.7 131 55.0
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 1.0e-38 163.7 131 55.0
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 1.0e-38 163.7 131 55.7
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 3.9e-38 161.8 131 54.2
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 3.9e-38 161.8 131 56.5
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 5.1e-38 161.4 137 51.1
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 5.1e-38 161.4 129 56.6
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 6.7e-38 161.0 164 50.0
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 6.7e-38 161.0 130 53.1
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 6.7e-38 161.0 131 55.0
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 8.7e-38 160.6 137 53.3
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 1.1e-37 160.2 131 54.2
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 1.9e-37 159.5 137 51.1
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 1.9e-37 159.5 131 53.4
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 1.9e-37 159.5 131 51.1
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 1.9e-37 159.5 164 47.6
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.3e-37 158.7 130 53.1
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 3.3e-37 158.7 137 49.6
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 3.3e-37 158.7 130 56.2
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 5.7e-37 157.9 129 54.3
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 5.7e-37 157.9 130 53.1
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 9.6e-37 157.1 130 53.1
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.3e-36 156.8 131 51.1
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 1.6e-36 156.4 131 52.7
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 1.6e-36 156.4 137 52.6
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 2.1e-36 156.0 130 53.8
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 2.1e-36 156.0 131 54.2
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 2.1e-36 156.0 130 53.8
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 2.8e-36 155.6 136 50.7
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 2.8e-36 155.6 136 50.7
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 2.8e-36 155.6 131 51.9
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 3.7e-36 155.2 136 50.0
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 4.8e-36 154.8 131 55.0
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 4.8e-36 154.8 131 51.1
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 4.8e-36 154.8 136 50.7
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 6.3e-36 154.5 131 50.4
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 6.3e-36 154.5 164 45.1
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 6.3e-36 154.5 137 48.9
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 6.3e-36 154.5 130 53.1
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 6.3e-36 154.5 130 53.1
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 6.3e-36 154.5 137 51.1
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 8.2e-36 154.1 131 52.7
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 8.2e-36 154.1 131 51.1
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 8.2e-36 154.1 130 51.5
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 8.2e-36 154.1 133 54.1
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 1.1e-35 153.7 130 52.3
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 1.1e-35 153.7 130 52.3
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.1e-35 153.7 129 51.9
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 1.4e-35 153.3 131 53.4
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 1.8e-35 152.9 149 47.0
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 1.8e-35 152.9 130 53.8
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 4.1e-35 151.8 131 53.4
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 5.3e-35 151.4 130 53.8
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 1.2e-34 150.2 131 52.7
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 1.2e-34 150.2 131 52.7
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 1.2e-34 150.2 137 49.6
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 2.6e-34 149.1 131 52.7
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 2.6e-34 149.1 131 52.7
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 2.6e-34 149.1 131 52.7
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 3.4e-34 148.7 131 53.4
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.4e-34 148.7 143 49.0
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 3.4e-34 148.7 131 51.9
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 4.5e-34 148.3 131 51.9
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 5.9e-34 147.9 131 51.9
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 5.9e-34 147.9 131 51.9
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 7.6e-34 147.5 159 45.9
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 1.0e-33 147.1 131 51.9
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 1.0e-33 147.1 131 49.6
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 1.7e-33 146.4 131 50.4
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 1.7e-33 146.4 130 53.1
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 2.2e-33 146.0 164 45.1
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 2.9e-33 145.6 131 54.2
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 2.9e-33 145.6 131 50.4
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 2.9e-33 145.6 130 51.5
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 5.0e-33 144.8 164 44.5
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 5.0e-33 144.8 130 50.8
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 8.5e-33 144.1 131 48.1
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 2.5e-32 142.5 131 51.1
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 3.2e-32 142.1 130 48.5
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 5.5e-32 141.4 167 42.5
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 5.5e-32 141.4 131 52.7
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 1.2e-31 140.2 130 49.2
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 1.6e-31 139.8 141 48.2
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 2.1e-31 139.4 130 50.0
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 2.1e-31 139.4 170 43.5
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 3.0e-30 135.6 139 45.3
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 3.9e-30 135.2 136 47.1
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 9.7e-29 130.6 131 45.0
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 1.3e-28 130.2 130 46.9
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 4.8e-28 128.3 130 46.9
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.3e-28 127.9 60 95.0
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.4e-27 126.7 91 61.5
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.4e-27 125.9 88 70.5
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.4e-27 125.9 88 70.5
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 9.1e-27 124.0 130 44.6
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.2e-26 123.6 60 93.3
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.0e-26 122.9 89 68.5
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 2.0e-26 122.9 114 48.2
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 7.7e-26 120.9 183 34.4
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 2.2e-25 119.4 131 45.0
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 2.2e-25 119.4 127 48.0
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.9e-25 119.0 88 68.2
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 5.0e-25 118.2 91 58.2
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.5e-25 117.9 88 67.0
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 1.9e-24 116.3 94 54.3
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 1.9e-24 116.3 94 54.3
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 2.5e-24 115.9 90 55.6
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.2e-24 115.5 122 45.1
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 1.0e-22 110.5 90 54.4
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 1.8e-22 109.8 95 53.7
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 3.9e-22 108.6 95 49.5
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 5.1e-22 108.2 91 52.7
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 8.8e-22 107.5 132 39.4
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.0e-21 106.3 119 44.5
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 5.7e-21 104.8 47 97.9
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 7.4e-21 104.4 94 51.1
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 2.8e-20 102.4 90 52.2
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 1.3e-17 93.6 95 46.3
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 3.8e-17 92.0 145 36.6
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.4e-16 90.1 129 34.9
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 4.2e-16 88.6 129 35.7
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 4.2e-16 88.6 76 52.6
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 1.8e-14 83.2 109 43.1
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 2.3e-14 82.8 106 45.3
AUR62038391 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.4e-13 78.6 40 90.0
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 2.8e-12 75.9 93 39.8
AUR62035772 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.7e-12 75.5 36 94.4
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 3.7e-12 75.5 99 44.4
AUR62023968 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.3e-12 74.7 36 94.4
AUR62000987 Chenopodium quinoa HOM05D001081 ORTHO05D004708 1.8e-11 73.2 40 75.0
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 9.1e-11 70.9 132 33.3
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 1.0e-09 67.4 132 33.3
MCO11G136 Micromonas commoda HOM05D004267 ORTHO05D005267 6.5e-09 64.7 146 32.9
AUR62002982 Chenopodium quinoa HOM05D000312 ORTHO05D002725 1.4e-06 57.0 82 39.0
Cfa025610 Carpinus fangiana HOM05D004267 ORTHO05D126065 8.8e-06 54.3 82 40.2


User provided reference genes

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