Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 7.2e-242 840.1 412 100.0
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 7.3e-218 760.4 390 95.9
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 4.2e-141 505.4 412 64.8
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 4.2e-125 452.2 383 60.3
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 2.4e-104 383.3 396 55.8
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 2.1e-100 370.2 412 48.5
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 1.2e-98 364.4 406 48.8
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 1.4e-96 357.5 409 48.7
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 1.3e-94 350.9 400 48.0
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 6.6e-94 348.6 403 47.6
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 2.5e-93 346.7 415 45.8
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 5.6e-93 345.5 413 47.2
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 2.3e-91 340.1 414 44.9
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 4.0e-91 339.3 411 45.3
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 8.9e-91 338.2 415 44.6
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 2.0e-90 337.0 407 45.2
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 2.6e-90 336.7 411 46.2
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 3.4e-90 336.3 409 46.2
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 5.8e-90 335.5 413 45.0
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 1.7e-89 334.0 389 47.0
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 2.2e-89 333.6 405 47.4
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 2.2e-89 333.6 392 45.9
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 8.4e-89 331.6 409 45.7
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 2.4e-88 330.1 402 44.3
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 3.2e-88 329.7 409 45.5
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 4.1e-88 329.3 401 46.1
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 4.1e-88 329.3 394 46.4
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 5.4e-88 328.9 413 42.9
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 9.2e-88 328.2 422 46.2
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 2.1e-87 327.0 400 46.0
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 3.5e-87 326.2 398 47.5
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 4.6e-87 325.9 410 45.9
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 4.6e-87 325.9 403 46.4
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 7.8e-87 325.1 404 46.3
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.3e-86 323.6 411 45.5
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 3.0e-86 323.2 405 43.2
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 6.6e-86 322.0 395 42.0
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 1.9e-85 320.5 419 45.1
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 3.3e-85 319.7 395 47.6
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 3.3e-85 319.7 410 44.1
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 1.6e-84 317.4 397 47.1
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 2.8e-84 316.6 411 44.3
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 1.4e-83 314.3 412 41.7
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 2.4e-83 313.5 416 44.2
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 5.2e-83 312.4 401 45.4
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 5.2e-83 312.4 379 45.4
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 1.5e-82 310.8 398 41.7
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 1.5e-82 310.8 398 41.7
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 1.5e-82 310.8 420 43.1
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 2.0e-82 310.5 394 43.1
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.6e-82 310.1 410 45.1
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 2.6e-82 310.1 397 42.6
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 3.4e-82 309.7 399 45.1
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 3.4e-82 309.7 411 45.5
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 7.6e-82 308.5 399 45.4
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 7.6e-82 308.5 396 41.9
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 7.6e-82 308.5 403 44.2
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 7.6e-82 308.5 355 47.0
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 9.9e-82 308.1 398 41.5
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 1.7e-81 307.4 427 41.5
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 1.7e-81 307.4 416 45.4
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 1.7e-81 307.4 411 45.0
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 2.2e-81 307.0 396 41.7
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 2.9e-81 306.6 397 42.3
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 6.4e-81 305.4 418 43.8
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 6.4e-81 305.4 393 44.8
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 5.4e-80 302.4 406 42.9
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 7.1e-80 302.0 403 44.2
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 6.0e-79 298.9 405 43.2
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 6.0e-79 298.9 394 44.7
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 1.3e-78 297.7 391 42.7
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 2.3e-78 297.0 393 41.5
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 1.5e-77 294.3 400 42.0
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.3e-77 293.1 392 44.9
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 5.6e-77 292.4 434 41.5
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 1.1e-75 288.1 470 38.5
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 1.4e-75 287.7 395 43.0
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 3.1e-75 286.6 407 42.3
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.0e-75 286.2 392 44.1
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 5.3e-75 285.8 377 41.4
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 6.9e-75 285.4 409 41.8
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 6.9e-75 285.4 409 41.8
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.5e-74 284.3 392 43.6
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 2.6e-74 283.5 423 38.8
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 5.8e-74 282.3 397 44.1
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 1.3e-73 281.2 302 53.0
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 1.7e-73 280.8 409 43.8
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 2.2e-73 280.4 396 39.4
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 1.4e-72 277.7 360 46.9
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 2.4e-72 276.9 396 38.6
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 3.2e-72 276.6 351 45.3
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 7.1e-72 275.4 343 42.6
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 2.1e-71 273.9 394 38.8
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 4.3e-69 266.2 401 40.4
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 9.6e-69 265.0 404 39.6
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 1.2e-66 258.1 326 46.6
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 4.5e-66 256.1 378 37.8
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 1.9e-64 250.8 308 46.4
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 1.9e-64 250.8 342 42.4
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 4.6e-63 246.1 393 37.2
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 6.0e-63 245.7 383 40.7
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 1.3e-62 244.6 410 38.3
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 3.4e-58 229.9 291 45.4
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 4.9e-57 226.1 370 35.7
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 3.1e-51 206.8 252 48.0
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.6e-47 194.5 255 46.7
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 6.7e-46 189.1 287 40.1
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 6.7e-46 189.1 468 31.2
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 4.3e-45 186.4 404 33.9
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 8.2e-44 182.2 309 37.5
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 1.1e-43 181.8 204 52.5
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 1.4e-43 181.4 471 30.8
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 2.4e-43 180.6 236 40.7
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 2.6e-42 177.2 415 31.1
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 1.3e-41 174.9 245 40.0
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 2.5e-40 170.6 283 38.9
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 2.7e-39 167.2 227 46.3
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 3.0e-38 163.7 192 43.8
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 4.8e-36 156.4 416 29.8
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 4.8e-36 156.4 212 44.8
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 2.4e-35 154.1 374 32.6
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 3.1e-35 153.7 176 44.9
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 5.3e-35 152.9 247 37.7
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 5.3e-35 152.9 183 45.4
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 1.1e-29 135.2 227 36.1
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 2.4e-27 127.5 102 55.9
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 7.7e-26 122.5 254 36.6
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 7.7e-26 122.5 254 36.6
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 7.2e-24 115.9 149 46.3
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 1.0e-22 112.1 188 37.8
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 5.2e-22 109.8 100 45.0
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 2.8e-20 104.0 184 38.0
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 4.8e-20 103.2 155 36.1
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 2.7e-18 97.4 154 39.0
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 4.5e-18 96.7 84 52.4
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 2.5e-16 90.9 111 40.5
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 1.2e-15 88.6 244 28.3
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 1.2e-15 88.6 135 39.3
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 1.2e-15 88.6 163 33.7
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 1.2e-13 82.0 118 38.1
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 2.6e-13 80.9 148 36.5
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 7.5e-13 79.3 128 33.6
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 3.7e-12 77.0 66 59.1
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 9.1e-11 72.4 110 38.2
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 5.9e-10 69.7 101 37.6
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 1.3e-09 68.6 88 39.8
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 3.0e-06 57.4 59 50.8


User provided reference genes

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