Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62008445 Chenopodium quinoa HOM05D007763 ORTHO05D009537 1.0e-130 471.5 635 100.0
AUR62021645 Chenopodium quinoa HOM05D007763 ORTHO05D009537 3.8e-109 399.8 658 86.6
Ah.02g113700 Amaranthus hybridus HOM05D007763 ORTHO05D009537 1.8e-58 231.5 190 64.7
Sc12g0006490 Simmondsia chinensis HOM05D007763 ORTHO05D009537 4.3e-52 210.3 185 57.3
Lsat_1_v5_gn_5_21540 Lactuca sativa HOM05D007763 ORTHO05D009537 3.3e-36 157.5 188 40.4
Dinv38739 Davidia involucrata HOM05D007763 ORTHO05D001128 5.7e-36 156.8 185 45.4
Migut.I00207 Erythranthe guttata HOM05D007763 ORTHO05D009537 7.4e-36 156.4 188 43.6
EL10Ac5g11053 Beta vulgaris HOM05D014602 ORTHO05D009537 3.7e-35 154.1 583 79.8
Ciclev10024595m.g Citrus clementina HOM05D007763 ORTHO05D009537 1.8e-34 151.8 176 44.3
COL.COLO4_36930 Corchorus olitorius HOM05D007763 ORTHO05D009537 9.1e-34 149.4 186 40.3
Thecc.03G093400 Theobroma cacao HOM05D007763 ORTHO05D009537 9.1e-34 149.4 190 41.6
MSTRG.11374 Avicennia marina HOM05D007763 ORTHO05D009537 2.6e-33 147.9 189 42.3
Duzib205G0970 Durio zibethinus HOM05D007763 ORTHO05D009537 1.7e-32 145.2 193 38.3
SGA_v2.0_scaffold25G10931 Striga asiatica HOM05D007763 ORTHO05D009537 1.7e-32 145.2 192 41.1
Atru.chr12.1670 Acer truncatum HOM05D007763 ORTHO05D009537 5.0e-32 143.7 180 43.3
Gohir.A03G067600 Gossypium hirsutum HOM05D007763 ORTHO05D009537 1.9e-31 141.7 189 39.7
Lj9C466T13 Lonicera japonica HOM05D007763 ORTHO05D009537 3.2e-31 141.0 173 42.2
Gorai.003G098200 Gossypium raimondii HOM05D007763 ORTHO05D009537 5.5e-31 140.2 170 40.6
Gohir.D03G094100 Gossypium hirsutum HOM05D007763 ORTHO05D009537 7.2e-31 139.8 170 40.6
Hma1.2p1_0060F.1_g033520 Hydrangea macrophylla HOM05D007763 ORTHO05D009537 1.2e-30 139.0 173 45.1
Prupe.5G197300 Prunus persica HOM05D007763 ORTHO05D009537 1.6e-30 138.7 178 41.0
PGR031G2821 Punica granatum HOM05D007763 ORTHO05D009537 3.6e-30 137.5 182 41.2
Actinidia04871 Actinidia chinensis HOM05D007763 ORTHO05D009537 4.7e-30 137.1 178 40.4
Cc04_g15160 Coffea canephora HOM05D007763 ORTHO05D009537 1.4e-29 135.6 168 42.9
Cfa018915 Carpinus fangiana HOM05D007763 ORTHO05D009537 6.7e-29 133.3 177 41.8
GSVIVG01007974001 Vitis vinifera HOM05D007763 ORTHO05D010304 1.1e-28 132.5 157 45.9
CSS0022156 Camellia sinensis var. sinensis HOM05D007763 ORTHO05D009537 1.5e-28 132.1 169 42.6
HanXRQChr08g0236691 Helianthus annuus HOM05D007763 ORTHO05D009537 5.7e-28 130.2 175 39.4
TAR622G0770 Trochodendron aralioides HOM05D007763 ORTHO05D009537 9.7e-28 129.4 164 41.5
Nn2g12476 Nelumbo nucifera HOM05D007763 ORTHO05D009537 2.4e-26 124.8 177 37.9
QL10p017571 Quercus lobata HOM05D007763 ORTHO05D009537 2.4e-26 124.8 154 42.9
Sed0000161 Sechium edule HOM05D007763 ORTHO05D009537 4.1e-26 124.0 177 39.5
TWI60G1313 Tripterygium wilfordii HOM05D007763 ORTHO05D009537 7.0e-26 123.2 140 44.3
Haze_07298 Corylus avellana HOM05D007763 ORTHO05D010304 1.2e-25 122.5 177 39.0
MELO3C025502.2 Cucumis melo HOM05D007763 ORTHO05D009537 1.3e-24 119.0 175 36.0
Hund02629 Selenicereus undatus HOM05D007763 ORTHO05D019789 3.8e-24 117.5 71 70.4
ClCG09G020450 Citrullus lanatus HOM05D007763 ORTHO05D009537 6.5e-24 116.7 179 36.3
CsaV3_5G025970 Cucumis sativus L. HOM05D007763 ORTHO05D009537 8.5e-24 116.3 175 36.0
CDE04G3021 Ceratophyllum demersum HOM05D007763 ORTHO05D000003 3.2e-23 114.4 181 36.5
Rhsim08G0152400 Rhododendron simsii HOM05D000001 ORTHO05D010304 9.4e-23 112.8 154 41.6
Manes.14G081200 Manihot esculenta HOM05D007763 ORTHO05D009537 1.2e-22 112.5 163 42.3
PSO017G0499 Papaver somniferum HOM05D007763 ORTHO05D009537 1.2e-22 112.5 184 35.9
Aqoxy3G00480 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 2.7e-22 111.3 152 40.1
RcHm_v2.0_Chr7g0181881 Rosa chinensis HOM05D007763 ORTHO05D009537 3.0e-21 107.8 164 39.0
FAN18G1924 Fragaria x ananassa HOM05D007763 ORTHO05D009537 1.3e-19 102.4 161 37.9
FAN13G0255 Fragaria x ananassa HOM05D007763 ORTHO05D009537 2.2e-19 101.7 161 36.6
FvH4_5g14610 Fragaria vesca HOM05D007763 ORTHO05D009537 3.7e-19 100.9 164 37.2
Oeu052450.2 Olea europaea HOM05D007763 ORTHO05D009537 3.7e-19 100.9 127 40.2
C09p08190 Brassica napus HOM05D007763 ORTHO05D009537 6.3e-19 100.1 177 32.2
BolC9t53731H Brassica oleracea HOM05D007763 ORTHO05D009537 6.3e-19 100.1 177 32.2
BcaC04g23450 Brassica carinata HOM05D007763 ORTHO05D009537 8.2e-19 99.8 177 32.2
BraA09t36381Z Brassica rapa HOM05D007763 ORTHO05D009537 4.1e-18 97.4 178 30.9
CARHR275160 Cardamine hirsuta HOM05D007763 ORTHO05D009537 9.1e-18 96.3 194 32.0
Aa31LG11G2020 Aethionema arabicum HOM05D007763 ORTHO05D009537 1.2e-17 95.9 175 30.3
BcaNung06902 Brassica carinata HOM05D007763 ORTHO05D009537 1.2e-17 95.9 165 33.9
LjContig00102g0005353 Lotus japonicus HOM05D000001 ORTHO05D010304 1.2e-17 95.9 79 48.1
THA.LOC104801471 Tarenaya hassleriana HOM05D007763 ORTHO05D009537 2.0e-17 95.1 178 33.7
Carub.0008s2207 Capsella rubella HOM05D007763 ORTHO05D009537 1.0e-16 92.8 194 32.5
MBI02_g14230_MAGBIO Magnolia biondii HOM05D007763 ORTHO05D011706 1.0e-16 92.8 131 38.9
Thhalv10005336m.g Eutrema salsugineum HOM05D007763 ORTHO05D009537 1.7e-16 92.0 190 31.1
AT5G61400 Arabidopsis thaliana HOM05D007763 ORTHO05D009537 4.2e-15 87.4 194 30.4
Aqoxy2G01348 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 5.5e-15 87.0 74 51.4
Ca_14664_v3 Cicer arietinum L. HOM05D007763 ORTHO05D009537 5.5e-15 87.0 75 46.7
Zm00001eb312410 Zea mays HOM05D007763 ORTHO05D009537 7.2e-15 86.7 83 43.4
Psat5g201000 Pisum sativum HOM05D007763 ORTHO05D009537 9.4e-15 86.3 72 48.6
AL8G38070 Arabidopsis lyrata HOM05D007763 ORTHO05D009537 1.2e-14 85.9 176 30.7
arahy.Tifrunner.gnm1.ann1.NWYI6Z Arachis hypogaea HOM05D000001 ORTHO05D010304 2.7e-14 84.7 86 43.0
arahy.Tifrunner.gnm1.ann1.PFL66H Arachis hypogaea HOM05D007763 ORTHO05D009537 2.7e-14 84.7 86 43.0
DCAR_002300 Daucus carota HOM05D007763 ORTHO05D009537 3.6e-14 84.3 104 43.3
Os09g0417500 Oryza sativa ssp. japonica HOM05D007763 ORTHO05D009537 4.7e-14 84.0 78 47.4
Phvul.009G185566 Phaseolus vulgaris HOM05D007763 ORTHO05D009537 1.0e-13 82.8 137 33.6
Lalb_Chr08g0235511 Lupinus albus HOM05D007763 ORTHO05D009537 2.3e-13 81.6 167 31.7
Sopen06g027000 Solanum pennellii HOM05D007763 ORTHO05D009537 7.5e-12 76.6 140 35.7
Solyc06g069700.4 Solanum lycopersicum HOM05D007763 ORTHO05D009537 2.2e-11 75.1 140 34.3
TPR.G11825 Trifolium pratense HOM05D007763 ORTHO05D009537 6.3e-11 73.6 87 41.4
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 1.4e-10 72.4 193 25.9
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 2.4e-10 71.6 192 24.5
ATR1127G168 Amborella trichopoda HOM05D007763 ORTHO05D009537 9.1e-10 69.7 152 28.3
CSS0002572 Camellia sinensis var. sinensis HOM05D006819 ORTHO05D008763 1.2e-09 69.3 168 29.2
BcaC04g23452 Brassica carinata HOM05D007763 ORTHO05D009537 1.0e-08 66.2 93 33.3
CSS0026240 Camellia sinensis var. sinensis HOM05D006819 ORTHO05D008763 1.3e-08 65.9 168 28.0
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 1.3e-08 65.9 187 26.2
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.7e-08 65.5 187 27.3
ATR1127G165 Amborella trichopoda HOM05D007763 ORTHO05D009537 2.2e-08 65.1 54 48.1
Lalb_Chr24g0394951 Lupinus albus HOM05D007358 ORTHO05D009117 2.2e-08 65.1 156 28.8
CiPaw.11G052700 Carya illinoinensis HOM05D005764 ORTHO05D006600 2.9e-08 64.7 85 38.8
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 3.8e-08 64.3 164 24.4
arahy.Tifrunner.gnm1.ann1.TF3CHY Arachis hypogaea HOM05D000981 ORTHO05D000845 3.8e-08 64.3 58 48.3
Glyma.08G090700 Glycine max HOM05D007496 ORTHO05D009479 3.8e-08 64.3 175 26.9
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 8.5e-08 63.2 185 22.2
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 8.5e-08 63.2 160 27.5
Nn8g39431 Nelumbo nucifera HOM05D006819 ORTHO05D008763 8.5e-08 63.2 169 27.8
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 8.5e-08 63.2 165 27.3
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 8.5e-08 63.2 184 26.1
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 1.1e-07 62.8 160 26.9
QL05p028543 Quercus lobata HOM05D006819 ORTHO05D008763 1.5e-07 62.4 169 30.2
Lj4P128T51 Lonicera japonica HOM05D007347 ORTHO05D009296 1.9e-07 62.0 57 45.6
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 2.5e-07 61.6 132 30.3
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 2.5e-07 61.6 162 29.0
Medtr3g037490 Medicago truncatula HOM05D007763 ORTHO05D009537 2.5e-07 61.6 54 44.4
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 2.5e-07 61.6 165 26.7
FvH4_5g09340 Fragaria vesca HOM05D005764 ORTHO05D006600 3.2e-07 61.2 63 44.4
Peaxi162Scf00013g00410 Petunia axillaris HOM05D007763 ORTHO05D009537 3.2e-07 61.2 93 38.7
FAN18G2453 Fragaria x ananassa HOM05D005764 ORTHO05D006600 5.5e-07 60.5 62 45.2
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 5.5e-07 60.5 169 27.8
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 5.5e-07 60.5 83 32.5
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 7.2e-07 60.1 83 33.7
Nitab4.5_0004286g0010 Nicotiana tabacum HOM05D007763 ORTHO05D009537 7.2e-07 60.1 48 52.1
VMungo0251G1188 Vigna mungo HOM05D007496 ORTHO05D009479 7.2e-07 60.1 180 25.6
Nitab4.5_0003021g0070 Nicotiana tabacum HOM05D007763 ORTHO05D009537 1.2e-06 59.3 44 59.1
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 1.6e-06 58.9 185 25.4
CsaV3_5G027190 Cucumis sativus L. HOM05D007358 ORTHO05D009117 1.6e-06 58.9 160 25.0
Sed0026792 Sechium edule HOM05D006819 ORTHO05D008763 1.6e-06 58.9 164 29.9
Sc04g0000230 Simmondsia chinensis HOM05D005764 ORTHO05D006600 2.1e-06 58.5 59 42.4
Aqoxy7G03720 Aquilegia oxysepala HOM05D006819 ORTHO05D008763 2.7e-06 58.2 170 26.5
AL8G38750 Arabidopsis lyrata HOM05D005764 ORTHO05D006600 2.7e-06 58.2 155 24.5
Os01g0559500 Oryza sativa ssp. japonica HOM05D007322 ORTHO05D009029 2.7e-06 58.2 63 42.9
SGA_v2.0_scaffold74G24732 Striga asiatica HOM05D005764 ORTHO05D006600 2.7e-06 58.2 171 28.1
AagrBONN_evm.TU.Sc2ySwM_117.1045 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.6e-06 57.8 57 36.8
SalBow2G2822 Salvia bowleyana HOM05D006819 ORTHO05D008763 3.6e-06 57.8 135 27.4
Os05g0365500 Oryza sativa ssp. japonica HOM05D002825 ORTHO05D003824 4.7e-06 57.4 83 36.1
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 4.7e-06 57.4 191 24.6
EL10Ac5g11299 Beta vulgaris HOM05D005764 ORTHO05D006600 6.1e-06 57.0 107 29.9
ATR0829G190 Amborella trichopoda HOM05D007291 ORTHO05D009038 8.0e-06 56.6 161 26.7
Peaxi162Scf01229g00021 Petunia axillaris HOM05D007455 ORTHO05D009431 8.0e-06 56.6 55 45.5
SalBow2G3436 Salvia bowleyana HOM05D006819 ORTHO05D008763 8.0e-06 56.6 135 27.4
SHI14851 Sapria himalayana HOM05D007496 ORTHO05D009479 8.0e-06 56.6 191 25.7
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 8.0e-06 56.6 81 30.9


User provided reference genes

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