Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 0.0e+00 2957.9 1535 100.0
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 0.0e+00 2770.7 1539 94.5
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 0.0e+00 1926.4 1548 69.9
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 0.0e+00 1667.5 1542 62.8
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 0.0e+00 1340.5 1560 54.7
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 7.5e-276 954.9 1593 43.9
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 4.1e-266 922.5 1558 44.8
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 2.3e-264 916.8 1628 42.8
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 4.7e-262 909.1 1672 41.9
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 1.2e-254 884.4 1659 42.1
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 2.5e-247 860.1 1613 42.3
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 3.3e-247 859.8 1613 42.3
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 3.6e-246 856.3 1697 40.5
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 1.2e-244 851.3 1608 40.9
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 9.9e-244 848.2 1615 42.3
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 1.3e-243 847.8 1621 41.6
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 4.6e-241 839.3 1589 41.7
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 1.8e-237 827.4 1611 42.2
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 2.7e-233 813.5 1617 40.4
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 2.7e-233 813.5 1627 39.4
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 4.6e-233 812.8 1610 39.9
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 1.3e-230 804.7 1608 39.6
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.5e-228 797.7 1597 40.5
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.6e-225 787.7 1617 39.9
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 3.5e-225 786.6 1607 39.4
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 2.3e-224 783.9 1620 40.1
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 8.7e-224 781.9 1626 38.9
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 5.6e-223 779.2 1614 39.8
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 6.2e-222 775.8 1616 39.2
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 4.0e-221 773.1 1618 39.7
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 5.1e-216 756.1 1605 38.3
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 1.5e-215 754.6 1635 38.7
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 2.8e-214 750.4 1607 39.9
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 6.3e-214 749.2 1605 39.8
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 2.6e-212 743.8 1655 38.9
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 7.6e-212 742.3 1596 38.8
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.0e-211 741.9 1608 38.5
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.9e-211 740.3 1597 38.3
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 1.1e-210 738.4 1628 39.6
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.4e-210 738.0 1604 38.3
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 4.2e-210 736.5 1611 37.6
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 2.1e-209 734.2 1613 39.2
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 1.1e-207 728.4 1663 36.7
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 3.3e-207 726.9 1603 38.0
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.1e-205 721.8 1606 37.9
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 4.1e-205 719.9 1662 38.6
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 3.8e-203 713.4 1660 37.3
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 1.6e-201 708.0 1654 36.8
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 1.1e-197 695.3 1606 37.5
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 4.1e-197 693.3 1606 37.9
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 8.5e-195 685.6 1608 38.4
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 1.2e-193 681.8 1601 38.5
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 5.2e-192 676.4 1583 37.3
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 5.2e-192 676.4 1619 37.1
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 3.3e-191 673.7 1634 36.8
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 1.7e-190 671.4 1639 37.7
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 1.0e-187 662.1 1609 36.9
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 2.5e-186 657.5 1608 37.3
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 5.5e-186 656.4 1667 36.1
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 3.1e-181 640.6 1585 36.8
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.2e-180 638.6 1581 36.3
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 1.6e-180 638.3 1657 36.3
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 3.5e-180 637.1 1614 37.1
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 5.9e-180 636.3 1618 35.9
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.3e-179 635.2 1620 36.1
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 1.5e-178 631.7 1611 35.3
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 3.2e-178 630.6 1615 34.9
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 4.2e-178 630.2 1669 36.0
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 5.5e-178 629.8 1603 36.6
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 2.1e-177 627.9 1626 36.5
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 2.1e-177 627.9 1655 34.5
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 2.7e-177 627.5 1304 38.8
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 4.5e-172 610.1 1428 37.3
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 7.7e-172 609.4 1598 35.4
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 7.2e-170 602.8 1623 34.0
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 1.4e-168 598.6 1590 35.8
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 7.5e-167 592.8 1515 36.0
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.3e-163 582.0 1586 34.5
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 2.1e-161 574.7 1622 35.3
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.3e-158 565.5 1622 34.3
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 4.6e-156 557.0 1615 33.9
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 2.3e-155 554.7 1585 34.3
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 1.7e-150 538.5 1636 34.3
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.0e-147 529.3 1750 34.0
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 4.7e-145 520.4 1580 33.5
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 8.1e-145 519.6 1582 32.7
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 1.9e-141 508.4 1204 38.1
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 2.7e-140 504.6 1394 34.8
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 4.6e-140 503.8 1581 33.2
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 6.6e-139 500.0 1596 33.0
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 4.3e-138 497.3 1593 34.0
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 7.3e-138 496.5 1616 32.6
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 1.4e-136 492.3 1568 32.5
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 2.6e-135 488.0 1590 32.6
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 4.4e-135 487.3 1583 32.4
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 3.8e-134 484.2 1609 32.3
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 4.9e-134 483.8 1610 31.8
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 9.2e-133 479.6 1597 33.8
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 1.0e-131 476.1 1720 32.0
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 2.3e-131 474.9 1591 32.7
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 3.9e-131 474.2 1590 32.6
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 8.6e-131 473.0 1591 33.1
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 2.1e-129 468.4 1713 32.2
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 2.8e-129 468.0 1587 32.5
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 3.1e-128 464.5 1591 31.7
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 1.5e-127 462.2 1576 31.9
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 6.4e-126 456.8 1577 32.1
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 1.4e-125 455.7 1569 31.9
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 7.8e-124 449.9 1582 31.9
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.9e-122 445.3 1210 34.2
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 2.3e-115 421.8 1629 31.4
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 3.9e-115 421.0 1571 31.4
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 1.9e-114 418.7 1372 33.5
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 8.1e-113 413.3 585 48.5
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 5.8e-111 407.1 1607 32.4
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 2.2e-110 405.2 1363 31.0
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 1.4e-109 402.5 1653 31.5
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 3.3e-106 391.3 1217 34.8
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 1.4e-101 375.9 754 38.2
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.4e-96 359.4 985 36.1
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 3.1e-96 358.2 1540 28.9
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 4.5e-79 301.2 1528 30.3
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 7.7e-79 300.4 315 56.8
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 2.0e-74 285.8 1557 27.5
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.9e-69 269.2 1556 28.0
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 3.2e-69 268.5 1626 28.8
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 4.7e-68 264.6 1277 30.3
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.0e-67 263.5 699 34.6
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 3.6e-60 238.4 192 70.3
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 9.1e-56 223.8 183 71.6
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 5.0e-54 218.0 647 34.8
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.8e-48 199.5 1566 26.9
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 5.4e-48 198.0 499 34.9
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.0e-46 193.7 236 53.4
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.3e-46 193.4 1300 27.8
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.6e-44 186.4 1274 27.0
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.4e-42 178.3 437 35.7
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 5.8e-42 177.9 194 59.3
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 4.1e-40 171.8 1467 27.4
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 8.3e-33 147.5 1404 26.3
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.1e-21 110.5 1299 25.3
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 3.3e-21 109.0 865 27.6
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 1.8e-19 103.2 212 40.1
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 3.1e-19 102.4 68 75.0
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.2e-18 100.5 362 32.6
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 4.4e-18 98.6 213 39.9
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 1.1e-16 94.0 522 31.2
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.9e-16 93.2 221 39.4
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 4.2e-16 92.0 198 40.4
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.6e-15 90.1 145 44.1
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 2.8e-12 79.3 503 29.4
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.8e-11 76.6 140 42.9
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 4.0e-11 75.5 151 35.8
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.2e-09 69.7 1752 23.3
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 3.2e-08 65.9 122 45.9
BcaC06g32868 Brassica carinata HOM05D003157 ORTHO05D004447 5.1e-06 58.5 115 40.0
C07p53750 Brassica napus HOM05D003157 ORTHO05D004447 5.1e-06 58.5 115 40.0
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 6.6e-06 58.2 143 44.8


User provided reference genes

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