Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 0.0e+00 1157.9 609 100.0
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 4.7e-306 1053.9 618 91.6
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 4.4e-296 1020.8 625 86.9
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 3.0e-292 1008.1 660 82.7
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 4.9e-271 937.6 626 78.9
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 6.4e-271 937.2 633 77.3
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 4.6e-269 931.0 633 77.1
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 4.3e-267 924.5 633 76.3
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 7.3e-267 923.7 633 76.6
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 1.1e-265 919.8 632 75.8
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 1.1e-265 919.8 633 76.0
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 2.4e-265 918.7 633 76.6
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 3.1e-265 918.3 631 75.8
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 3.4e-264 914.8 633 75.2
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 4.5e-264 914.4 633 75.0
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 7.6e-264 913.7 632 75.9
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 2.9e-263 911.8 633 75.8
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 3.8e-263 911.4 633 75.0
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.9e-262 909.1 633 75.2
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 5.4e-262 907.5 633 74.9
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 7.1e-262 907.1 631 75.0
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 9.3e-262 906.7 657 73.2
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.6e-261 906.0 633 75.0
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 1.6e-261 906.0 633 74.4
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 2.1e-261 905.6 633 75.5
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 4.6e-261 904.4 630 75.9
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 1.8e-260 902.5 634 75.2
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 1.1e-259 899.8 633 73.9
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.9e-259 899.0 632 75.6
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 2.5e-259 898.7 633 74.4
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 3.3e-259 898.3 633 74.6
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 2.8e-258 895.2 633 73.8
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 3.7e-258 894.8 633 74.4
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.4e-257 892.9 640 73.1
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.5e-256 889.4 643 72.5
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 5.8e-256 887.5 634 74.0
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 7.6e-256 887.1 633 73.8
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 1.7e-255 885.9 634 73.8
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 3.8e-255 884.8 672 71.1
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 4.9e-255 884.4 636 73.4
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 1.9e-254 882.5 633 73.0
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.7e-253 878.6 633 72.8
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.1e-251 873.2 753 64.7
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 5.7e-251 870.9 633 71.6
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 6.2e-250 867.5 633 72.0
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 6.2e-250 867.5 633 71.6
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 8.2e-250 867.1 634 72.1
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 1.4e-249 866.3 632 71.7
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 1.8e-249 865.9 632 71.5
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 1.2e-248 863.2 632 71.4
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 1.3e-247 859.8 632 70.6
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 1.7e-247 859.4 630 71.6
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 1.7e-247 859.4 633 71.4
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 1.1e-246 856.7 631 70.5
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 3.2e-246 855.1 632 70.1
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 3.2e-246 855.1 633 71.1
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 4.2e-246 854.7 631 70.2
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 5.5e-246 854.4 632 70.1
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 5.5e-246 854.4 700 67.0
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 2.7e-245 852.0 632 69.9
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 7.9e-245 850.5 628 70.5
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 1.0e-244 850.1 628 70.5
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 1.8e-244 849.4 665 68.1
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 3.9e-244 848.2 631 71.0
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 3.9e-244 848.2 633 70.8
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 1.1e-243 846.7 635 70.4
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 3.7e-242 841.6 630 70.2
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 8.2e-242 840.5 634 69.9
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 8.2e-242 840.5 634 69.9
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 5.3e-241 837.8 632 69.8
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 5.3e-241 837.8 633 69.4
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 5.9e-240 834.3 639 69.3
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 8.5e-239 830.5 632 69.3
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 9.4e-238 827.0 629 69.3
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.4e-236 823.2 643 67.5
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 3.9e-236 821.6 633 69.0
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 1.1e-235 820.1 633 68.2
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 1.5e-235 819.7 638 68.5
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 5.3e-233 811.2 615 68.9
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 6.9e-233 810.8 590 72.0
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 1.2e-229 800.0 557 75.0
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 1.4e-228 796.6 630 66.2
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 2.3e-228 795.8 617 67.9
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 1.0e-223 780.4 590 69.2
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 5.0e-223 778.1 630 65.1
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.2e-216 756.9 654 62.7
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 1.9e-214 749.6 532 73.1
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 3.2e-214 748.8 532 72.9
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 7.2e-214 747.7 624 65.2
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 3.6e-213 745.3 529 74.3
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 3.0e-212 742.3 558 70.6
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 4.4e-211 738.4 484 79.8
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 2.9e-207 725.7 630 63.2
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.5e-206 723.4 630 60.6
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 9.8e-195 684.1 630 56.2
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 9.2e-193 677.6 462 76.4
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 4.9e-186 655.2 532 67.7
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 2.4e-185 652.9 636 54.6
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.7e-178 629.0 573 61.8
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 6.2e-173 611.7 631 53.1
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 1.2e-163 580.9 664 47.7
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 1.0e-159 567.8 372 79.6
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 8.1e-149 531.6 342 81.6
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 9.0e-148 528.1 360 75.8
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 9.6e-142 508.1 502 58.4
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 7.1e-137 491.9 632 44.3
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 2.4e-132 476.9 406 64.0
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 1.5e-131 474.2 632 42.4
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 1.4e-119 434.5 378 60.3
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 1.8e-111 407.5 525 42.7
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.8e-103 380.9 282 74.1
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.3e-101 374.8 613 40.6
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 2.8e-93 347.1 470 48.1
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 2.3e-90 337.4 390 53.3
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.2e-62 245.4 175 71.4
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 3.4e-62 243.8 171 73.1
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 8.6e-58 229.2 186 62.4
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 5.6e-57 226.5 134 81.3
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 2.1e-51 208.0 143 78.3
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.5e-51 207.2 152 73.0
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 4.6e-43 180.3 150 64.0
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 3.0e-42 177.6 117 76.9
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 1.3e-37 162.2 122 70.5
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.4e-36 157.9 140 59.3
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 4.2e-36 157.1 105 70.5
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 5.4e-36 156.8 105 78.1
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 8.7e-34 149.4 106 70.8
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.5e-33 147.9 163 50.9
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 2.1e-32 144.8 86 82.6
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 1.1e-28 132.5 100 72.0
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 3.7e-24 117.5 73 79.5
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 2.6e-22 111.3 56 83.9
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 2.6e-22 111.3 56 83.9
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.0e-21 109.4 84 65.5
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 5.5e-20 103.6 53 84.9
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 1.0e-18 99.4 107 47.7
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.8e-18 98.6 123 43.9
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 1.1e-17 95.9 63 66.7
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 1.5e-17 95.5 117 55.6
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 7.4e-17 93.2 54 74.1
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.8e-15 88.6 76 59.2
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 4.1e-15 87.4 54 74.1
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 1.0e-10 72.8 48 81.2
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 3.9e-10 70.9 80 48.8
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 6.7e-10 70.1 42 76.2
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.8e-08 64.7 38 71.1
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 5.3e-07 60.5 37 59.5


User provided reference genes

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