Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.5e-192 676.0 344 100.0
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.3e-183 646.4 344 94.8
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 1.6e-157 559.7 346 81.2
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 1.9e-150 536.2 348 77.9
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 6.7e-132 474.6 347 66.9
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 1.2e-104 384.0 352 57.7
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.2e-104 384.0 335 57.3
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 5.9e-104 381.7 337 57.9
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 1.3e-103 380.6 329 58.4
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 1.7e-103 380.2 352 56.5
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 1.7e-103 380.2 345 56.2
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 3.8e-103 379.0 339 56.6
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 3.2e-102 375.9 327 58.1
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 3.2e-102 375.9 327 58.1
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 3.2e-102 375.9 347 57.6
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 2.1e-101 373.2 349 57.6
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 3.6e-101 372.5 341 56.6
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 4.7e-101 372.1 350 55.4
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 2.3e-100 369.8 350 55.4
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 3.0e-100 369.4 345 55.9
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 3.0e-100 369.4 326 58.6
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 6.7e-100 368.2 354 53.4
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 6.7e-100 368.2 339 57.5
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 1.5e-99 367.1 333 56.8
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 4.4e-99 365.5 345 55.1
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 7.4e-99 364.8 341 56.0
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 1.3e-98 364.0 344 54.9
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 2.2e-98 363.2 353 54.7
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 2.8e-98 362.8 343 55.1
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 3.7e-98 362.5 340 56.2
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 6.3e-98 361.7 353 55.0
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 1.4e-97 360.5 330 54.5
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 2.4e-97 359.8 348 54.0
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 3.1e-97 359.4 359 51.8
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 9.1e-97 357.8 351 53.6
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 2.6e-96 356.3 353 53.3
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 2.6e-96 356.3 333 55.3
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 3.5e-96 355.9 354 53.7
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 3.5e-96 355.9 354 53.7
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 3.5e-96 355.9 354 53.7
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 3.5e-96 355.9 354 53.7
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 3.5e-96 355.9 333 55.3
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 1.0e-95 354.4 327 54.7
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 1.0e-95 354.4 328 55.8
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 1.3e-95 354.0 359 52.1
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 2.2e-95 353.2 355 53.2
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 2.9e-95 352.8 329 54.7
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 2.9e-95 352.8 344 54.1
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 3.8e-95 352.4 341 54.0
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 5.0e-95 352.1 333 55.9
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 5.0e-95 352.1 350 54.3
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 1.5e-94 350.5 338 55.0
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.5e-94 350.5 341 54.5
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 1.9e-94 350.1 341 54.5
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 5.5e-94 348.6 365 51.0
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 1.2e-93 347.4 329 55.6
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 1.2e-93 347.4 342 52.0
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.2e-93 347.4 381 49.6
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 1.6e-93 347.1 334 56.3
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 2.7e-93 346.3 329 55.3
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 3.6e-93 345.9 322 56.5
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 6.1e-93 345.1 333 53.2
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 6.1e-93 345.1 320 54.1
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 8.0e-93 344.7 354 53.4
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 1.0e-92 344.4 336 52.7
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 3.0e-92 342.8 336 53.9
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 5.2e-92 342.0 350 52.3
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 6.7e-92 341.7 348 50.6
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 8.8e-92 341.3 337 52.2
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 1.1e-91 340.9 352 52.3
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 1.5e-91 340.5 353 52.4
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 5.7e-91 338.6 339 53.1
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 5.7e-91 338.6 334 53.3
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 7.5e-91 338.2 307 55.7
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 1.7e-90 337.0 320 54.1
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 2.8e-90 336.3 340 51.2
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 1.1e-89 334.3 352 51.1
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 4.1e-89 332.4 340 52.4
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 7.0e-89 331.6 354 50.0
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 9.1e-89 331.3 340 52.4
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 4.5e-88 328.9 376 49.2
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 4.5e-88 328.9 376 49.2
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 1.1e-86 324.3 336 52.1
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.5e-86 323.9 376 48.4
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 2.5e-86 323.2 322 53.1
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 1.2e-85 320.9 325 51.7
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 2.7e-85 319.7 327 51.4
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 1.4e-84 317.4 352 49.7
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 2.3e-84 316.6 325 51.7
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 5.2e-84 315.5 332 48.8
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 4.8e-82 308.9 312 52.2
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 6.3e-82 308.5 352 48.0
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 1.8e-81 307.0 330 49.1
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 1.2e-80 304.3 342 49.1
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 3.8e-79 299.3 298 51.7
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 2.0e-72 276.9 357 43.4
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 1.6e-69 267.3 326 45.7
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 4.1e-65 252.7 172 67.4
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 5.4e-65 252.3 330 43.3
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 1.6e-64 250.8 203 58.1
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 2.3e-63 246.9 174 62.6
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 3.0e-63 246.5 341 41.9
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 2.3e-60 236.9 327 39.1
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 3.1e-60 236.5 300 43.7
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 1.3e-58 231.1 339 40.1
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 7.0e-57 225.3 322 37.3
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 7.3e-54 215.3 202 53.5
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 3.6e-53 213.0 235 47.7
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 4.7e-53 212.6 132 72.0
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 1.4e-49 201.1 330 39.7
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 4.1e-49 199.5 350 35.4
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 3.5e-48 196.4 334 38.9
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 7.3e-46 188.7 311 39.5
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 2.8e-45 186.8 131 64.9
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 1.5e-38 164.5 350 33.4
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 1.2e-37 161.4 311 36.0
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 5.2e-36 156.0 205 42.9
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 4.4e-35 152.9 318 34.6
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 1.9e-33 147.5 346 30.6
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 1.5e-30 137.9 255 35.3
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 1.4e-28 131.3 150 43.3
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 8.4e-26 122.1 86 65.1
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 2.7e-24 117.1 148 45.3
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 6.6e-23 112.5 150 47.3
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 1.3e-21 108.2 87 64.4
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 9.0e-20 102.1 69 62.3
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.4e-17 94.7 90 55.6
SEGI_41531 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 3.2e-17 93.6 146 39.7
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 1.2e-16 91.7 70 64.3
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 2.8e-13 80.5 132 29.5
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 9.3e-09 65.5 62 51.6
Cfa025806 Carpinus fangiana HOM05D005879 ORTHO05D123935 3.5e-08 63.5 110 30.0
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 1.3e-07 61.6 96 34.4
BcaC01g00330 Brassica carinata HOM05D005879 ORTHO05D007432 8.7e-07 58.9 145 33.1


User provided reference genes

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