Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62008047 Chenopodium quinoa HOM05D007415 ORTHO05D009324 3.8e-117 424.9 216 100.0
AUR62028622 Chenopodium quinoa HOM05D007415 ORTHO05D009324 1.4e-111 406.4 216 94.9
EL10Ac5g10567 Beta vulgaris HOM05D007415 ORTHO05D009324 4.7e-67 258.5 253 59.7
Sc05g0001580 Simmondsia chinensis HOM05D007415 ORTHO05D009324 8.0e-67 257.7 254 55.9
Manes.12G058800 Manihot esculenta HOM05D007415 ORTHO05D009324 3.5e-54 215.7 249 50.2
Hund02818 Selenicereus undatus HOM05D007415 ORTHO05D009324 6.0e-54 214.9 248 51.6
Ah.11g050670 Amaranthus hybridus HOM05D007415 ORTHO05D009324 1.1e-52 210.7 227 55.1
TWI36G0361 Tripterygium wilfordii HOM05D007415 ORTHO05D009324 1.5e-52 210.3 213 54.5
Thecc.01G204000 Theobroma cacao HOM05D007415 ORTHO05D009324 4.3e-52 208.8 248 49.2
Ciclev10016323m.g Citrus clementina HOM05D007415 ORTHO05D009324 1.6e-51 206.8 250 48.4
Gohir.D07G201100 Gossypium hirsutum HOM05D007415 ORTHO05D009324 2.8e-51 206.1 260 48.1
Gorai.001G225800 Gossypium raimondii HOM05D007415 ORTHO05D009324 2.8e-51 206.1 260 48.1
Dinv02951 Davidia involucrata HOM05D007415 ORTHO05D009324 3.6e-51 205.7 261 49.0
CSS0038002 Camellia sinensis var. sinensis HOM05D007415 ORTHO05D009324 1.1e-50 204.1 262 47.7
CiPaw.07G119000 Carya illinoinensis HOM05D007415 ORTHO05D009324 3.1e-50 202.6 254 47.6
Atru.chr6.3473 Acer truncatum HOM05D007415 ORTHO05D009324 4.0e-50 202.2 253 48.2
Cfa006296 Carpinus fangiana HOM05D007415 ORTHO05D009324 4.0e-50 202.2 255 47.5
MSTRG.21289 Avicennia marina HOM05D007415 ORTHO05D009324 6.8e-50 201.4 248 48.0
Potri.014G197700 Populus trichocarpa HOM05D007415 ORTHO05D009324 2.0e-49 199.9 252 47.2
Oeu058216.1 Olea europaea HOM05D007415 ORTHO05D009324 9.9e-49 197.6 238 47.5
Eucgr.K02344 Eucalyptus grandis HOM05D007415 ORTHO05D009324 2.2e-48 196.4 247 46.6
COL.COLO4_19724 Corchorus olitorius HOM05D007415 ORTHO05D009324 2.9e-48 196.1 236 47.0
ECA247G1801 Erigeron canadensis HOM05D007415 ORTHO05D009324 2.9e-48 196.1 203 52.2
MELO3C002194.2 Cucumis melo HOM05D007415 ORTHO05D009324 3.8e-48 195.7 241 47.3
TAR636G2599 Trochodendron aralioides HOM05D007415 ORTHO05D009324 6.4e-48 194.9 246 45.9
PGR044G2664 Punica granatum HOM05D007415 ORTHO05D009324 8.4e-48 194.5 254 46.5
CSS0018954 Camellia sinensis var. sinensis HOM05D007415 ORTHO05D009324 1.4e-47 193.7 252 48.0
CsaV3_1G007790 Cucumis sativus L. HOM05D007415 ORTHO05D009324 1.4e-47 193.7 243 46.9
Migut.D00758 Erythranthe guttata HOM05D007415 ORTHO05D009324 2.4e-47 193.0 254 43.3
vmacro14670 Vaccinium macrocarpon HOM05D007415 ORTHO05D009324 2.4e-47 193.0 262 45.4
Cc01_g15740 Coffea canephora HOM05D007415 ORTHO05D009324 4.1e-47 192.2 238 45.8
Actinidia23816 Actinidia chinensis HOM05D007415 ORTHO05D009324 7.1e-47 191.4 249 45.4
PSO732G0601 Papaver somniferum HOM05D007415 ORTHO05D009324 7.1e-47 191.4 214 50.0
Lsat_1_v5_gn_9_15740 Lactuca sativa HOM05D007415 ORTHO05D009324 2.7e-46 189.5 257 45.1
Sed0017664 Sechium edule HOM05D007415 ORTHO05D009324 7.8e-46 188.0 243 47.7
Sopen09g012680 Solanum pennellii HOM05D007415 ORTHO05D009324 1.0e-45 187.6 256 44.1
Nitab4.5_0011643g0030 Nicotiana tabacum HOM05D007415 ORTHO05D009324 3.0e-45 186.0 234 46.2
Sp7g09150 Schrenkiella parvula HOM05D007415 ORTHO05D009324 3.9e-45 185.7 247 44.9
THA.LOC104808823 Tarenaya hassleriana HOM05D007415 ORTHO05D009324 5.1e-45 185.3 232 45.7
Solyc09g018950.3 Solanum lycopersicum HOM05D007415 ORTHO05D009324 1.1e-44 184.1 256 43.4
arahy.Tifrunner.gnm1.ann1.HL0ERI Arachis hypogaea HOM05D007415 ORTHO05D009324 3.3e-44 182.6 253 43.5
MD11G1318200 Malus domestica HOM05D007415 ORTHO05D009324 4.3e-44 182.2 252 44.0
CAN.G15.19 Capsicum annuum HOM05D007415 ORTHO05D009324 5.6e-44 181.8 252 42.9
Aa31sc565G30 Aethionema arabicum HOM05D007415 ORTHO05D009324 9.6e-44 181.0 246 43.5
ClCG01G014510 Citrullus lanatus HOM05D007415 ORTHO05D009324 9.6e-44 181.0 259 44.4
MD03G1298900 Malus domestica HOM05D007415 ORTHO05D009324 9.6e-44 181.0 252 44.0
unitig_61.g26009 Utricularia gibba HOM05D007415 ORTHO05D009324 9.6e-44 181.0 232 44.4
HanXRQChr08g0230811 Helianthus annuus HOM05D007415 ORTHO05D009324 1.2e-43 180.6 236 44.9
Prupe.8G267300 Prunus persica HOM05D007415 ORTHO05D009324 1.2e-43 180.6 254 44.9
arahy.Tifrunner.gnm1.ann1.YL0UD8 Arachis hypogaea HOM05D007415 ORTHO05D009324 1.6e-43 180.3 253 42.7
Nn4g24568 Nelumbo nucifera HOM05D007415 ORTHO05D009324 4.7e-43 178.7 251 43.4
Rhsim01G0246200 Rhododendron simsii HOM05D007415 ORTHO05D009324 6.2e-43 178.3 255 44.7
PSO675G4429 Papaver somniferum HOM05D007415 ORTHO05D009324 5.2e-42 175.3 247 42.5
CANSAT11G1932 Cannabis sativa HOM05D007415 ORTHO05D009324 6.9e-42 174.9 263 45.2
SalBow6G5534 Salvia bowleyana HOM05D007415 ORTHO05D009324 8.9e-42 174.5 311 38.3
Thhalv10026014m.g Eutrema salsugineum HOM05D007415 ORTHO05D009324 1.2e-41 174.1 247 43.3
Phvul.009G118400 Phaseolus vulgaris HOM05D007415 ORTHO05D009324 2.6e-41 172.9 200 49.0
GSVIVG01038257001 Vitis vinifera HOM05D007415 ORTHO05D009324 5.8e-41 171.8 232 41.8
Sabra14G0132700 Salix brachista HOM05D007415 ORTHO05D009324 1.3e-40 170.6 319 37.3
AL9U11890 Arabidopsis lyrata HOM05D007415 ORTHO05D009324 3.8e-40 169.1 231 45.0
Gohir.A07G194700 Gossypium hirsutum HOM05D007415 ORTHO05D009324 6.4e-40 168.3 207 48.8
Lj1g0001063 Lotus japonicus HOM05D007415 ORTHO05D009324 1.9e-39 166.8 250 40.4
Os05g0417300 Oryza sativa ssp. japonica HOM05D007415 ORTHO05D009324 2.4e-39 166.4 249 41.0
QL03p044140 Quercus lobata HOM05D007415 ORTHO05D009324 2.4e-39 166.4 223 45.7
AT4G12760 Arabidopsis thaliana HOM05D007415 ORTHO05D009324 3.2e-39 166.0 234 44.9
Nitab4.5_0010771g0010 Nicotiana tabacum HOM05D007415 ORTHO05D009324 3.2e-39 166.0 231 43.7
BcaB04g17744 Brassica carinata HOM05D007415 ORTHO05D009324 4.2e-39 165.6 247 40.9
Carub.0007s3006 Capsella rubella HOM05D007415 ORTHO05D009324 7.1e-39 164.9 248 42.7
CARHR218100 Cardamine hirsuta HOM05D007415 ORTHO05D009324 1.2e-38 164.1 249 44.6
Duzib133G1418 Durio zibethinus HOM05D007415 ORTHO05D009324 2.7e-38 162.9 198 51.0
MBI10_g35389_MAGBIO Magnolia biondii HOM05D007415 ORTHO05D009324 7.8e-38 161.4 237 41.4
SHI10204 Sapria himalayana HOM05D007415 ORTHO05D009324 1.3e-37 160.6 247 40.9
BcaC07g37433 Brassica carinata HOM05D007415 ORTHO05D009324 2.3e-37 159.8 233 42.1
C08p09070 Brassica napus HOM05D007415 ORTHO05D009324 2.3e-37 159.8 250 40.4
BolC8t47754H Brassica oleracea HOM05D007415 ORTHO05D009324 2.3e-37 159.8 250 40.4
BraA08t32753Z Brassica rapa HOM05D007415 ORTHO05D009324 1.5e-36 157.1 256 39.5
Glyma.04G002800 Glycine max HOM05D007415 ORTHO05D009324 9.6e-36 154.5 233 40.3
VMungo1309G2266 Vigna mungo HOM05D007415 ORTHO05D009324 1.3e-35 154.1 257 39.3
Cpa.g.sc8.12 Carica papaya HOM05D007415 ORTHO05D009324 1.8e-34 150.2 187 47.6
Psat5g001880 Pisum sativum HOM05D007415 ORTHO05D009324 5.3e-34 148.7 248 39.5
A08p07370 Brassica napus HOM05D007415 ORTHO05D009324 9.0e-34 147.9 281 36.3
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 1.5e-33 147.1 241 39.0
Medtr3g118090 Medicago truncatula HOM05D007415 ORTHO05D009324 1.3e-32 144.1 264 37.5
Aqoxy4G00006 Aquilegia oxysepala HOM05D007415 ORTHO05D009324 4.9e-32 142.1 253 39.1
Peaxi162Scf00424g00066 Petunia axillaris HOM05D007415 ORTHO05D009324 1.4e-31 140.6 225 40.9
CDE04G2941 Ceratophyllum demersum HOM05D007415 ORTHO05D009324 2.7e-30 136.3 250 37.6
TPR.G38565 Trifolium pratense HOM05D007415 ORTHO05D009324 8.7e-29 131.3 198 40.4
Lalb_Chr11g0061191 Lupinus albus HOM05D007415 ORTHO05D009324 2.8e-27 126.3 162 45.1
ATR0743G053 Amborella trichopoda HOM05D007415 ORTHO05D009324 4.2e-23 112.5 232 31.0
Lj1C108T7 Lonicera japonica HOM05D007415 ORTHO05D009324 2.1e-22 110.2 179 41.3
Haze_04514 Corylus avellana HOM05D007415 ORTHO05D009324 6.0e-22 108.6 149 46.3
PGSC0003DMG400020290 Solanum tuberosum HOM05D007415 ORTHO05D009324 3.0e-21 106.3 139 46.0
Ca_15292_v3 Cicer arietinum L. HOM05D007415 ORTHO05D009324 6.7e-21 105.1 151 39.1
Duzib138G0016 Durio zibethinus HOM05D007415 ORTHO05D009324 1.9e-20 103.6 217 35.9
HPP92_001921 Vanilla planifolia HOM05D007415 ORTHO05D009324 6.9e-18 95.1 149 41.6
Mapoly0134s0003 Marchantia polymorpha HOM05D007415 ORTHO05D009324 2.9e-16 89.7 253 29.2
SalBow2G2324 Salvia bowleyana HOM05D007415 ORTHO05D009324 4.6e-14 82.4 233 27.9
Pp3c1_28310 Physcomitrium patens HOM05D007415 ORTHO05D009324 1.3e-13 80.9 243 26.3
Glyma.06G002800 Glycine max HOM05D007415 ORTHO05D009324 3.0e-13 79.7 111 41.4
SMO356G0522 Selaginella moellendorffii HOM05D007415 ORTHO05D009324 3.9e-13 79.3 240 29.2
Zm00001eb288240 Zea mays HOM05D007415 ORTHO05D009324 9.6e-12 74.7 112 39.3
AagrBONN_evm.TU.Sc2ySwM_362.2902 Anthoceros agrestis HOM05D007415 ORTHO05D009324 1.4e-10 70.9 159 34.0
PGSC0003DMG400007530 Solanum tuberosum HOM05D007415 ORTHO05D009324 7.6e-09 65.1 78 42.3
DCAR_017283 Daucus carota HOM05D007415 ORTHO05D009324 4.2e-07 59.3 114 38.6


User provided reference genes

Program Settings