Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62008032 Chenopodium quinoa HOM05D000272 ORTHO05D028625 6.5e-140 500.7 258 100.0
AUR62003210 Chenopodium quinoa HOM05D000272 ORTHO05D000164 1.2e-133 479.9 255 94.1
EL10Ac6g14867 Beta vulgaris HOM05D000272 ORTHO05D000164 4.9e-79 298.5 334 56.6
Hund16571 Selenicereus undatus HOM05D000272 ORTHO05D000164 3.8e-39 166.0 321 40.5
Sabra07G0028600 Salix brachista HOM05D000272 ORTHO05D000164 7.9e-29 131.7 344 35.5
Potri.005G129500 Populus trichocarpa HOM05D000272 ORTHO05D000164 3.9e-28 129.4 322 36.3
Potri.007G032700 Populus trichocarpa HOM05D000272 ORTHO05D000164 2.2e-26 123.6 345 34.2
Duzib264G1110 Durio zibethinus HOM05D000272 ORTHO05D000164 2.8e-26 123.2 314 36.9
Thecc.01G043900 Theobroma cacao HOM05D000272 ORTHO05D000164 2.8e-26 123.2 314 37.6
Duzib147G1460 Durio zibethinus HOM05D000272 ORTHO05D000164 2.4e-25 120.2 314 38.5
Eucgr.I02488 Eucalyptus grandis HOM05D000272 ORTHO05D000164 5.3e-25 119.0 350 34.0
Dinv39936 Davidia involucrata HOM05D000272 ORTHO05D000164 9.1e-25 118.2 330 37.6
QL06p044514 Quercus lobata HOM05D000272 ORTHO05D000164 9.1e-25 118.2 155 48.4
Ciclev10024897m.g Citrus clementina HOM05D000272 ORTHO05D000164 1.2e-24 117.9 187 47.1
Manes.12G096500 Manihot esculenta HOM05D000272 ORTHO05D000164 1.6e-24 117.5 332 33.7
CAN.G836.9 Capsicum annuum HOM05D000272 ORTHO05D000164 4.5e-24 115.9 306 36.6
CiPaw.01G030600 Carya illinoinensis HOM05D000272 ORTHO05D000164 5.9e-24 115.5 329 34.0
Manes.13G134500 Manihot esculenta HOM05D000272 ORTHO05D000164 2.2e-23 113.6 332 33.4
Cfa004250 Carpinus fangiana HOM05D000272 ORTHO05D000164 2.9e-23 113.2 328 35.4
CiPaw.02G014200 Carya illinoinensis HOM05D000272 ORTHO05D000164 3.8e-23 112.8 345 33.9
Lj4A134T60 Lonicera japonica HOM05D000272 ORTHO05D000164 3.8e-23 112.8 268 37.7
Solyc02g089940.4 Solanum lycopersicum HOM05D000272 ORTHO05D000164 5.0e-23 112.5 299 36.8
Sopen02g034630 Solanum pennellii HOM05D000272 ORTHO05D000164 5.0e-23 112.5 299 36.8
Cpa.g.sc15.126 Carica papaya HOM05D000272 ORTHO05D000164 8.5e-23 111.7 289 36.0
COL.COLO4_22159 Corchorus olitorius HOM05D000272 ORTHO05D000164 1.9e-22 110.5 321 37.7
Lj2g0003874 Lotus japonicus HOM05D000272 ORTHO05D000164 2.5e-22 110.2 144 50.7
PGSC0003DMG400010086 Solanum tuberosum HOM05D000272 ORTHO05D000164 2.5e-22 110.2 301 36.9
MD02G1156800 Malus domestica HOM05D000272 ORTHO05D000164 3.2e-22 109.8 325 33.2
Haze_15149 Corylus avellana HOM05D000272 ORTHO05D000164 4.2e-22 109.4 325 34.5
Gorai.008G070800 Gossypium raimondii HOM05D000272 ORTHO05D000164 5.5e-22 109.0 150 47.3
MD15G1271200 Malus domestica HOM05D000272 ORTHO05D000164 5.5e-22 109.0 340 32.1
Prupe.7G146900 Prunus persica HOM05D000272 ORTHO05D000164 5.5e-22 109.0 334 33.5
Sc03g0001050 Simmondsia chinensis HOM05D000272 ORTHO05D000164 9.4e-22 108.2 286 35.0
Lalb_Chr05g0213031 Lupinus albus HOM05D000272 ORTHO05D000164 1.2e-21 107.8 323 35.3
Gohir.D12G067400 Gossypium hirsutum HOM05D000272 ORTHO05D000164 2.1e-21 107.1 286 36.4
Lalb_Chr16g0388531 Lupinus albus HOM05D000272 ORTHO05D000164 2.7e-21 106.7 138 52.9
Lsat_1_v5_gn_3_93460 Lactuca sativa HOM05D000272 ORTHO05D000164 1.4e-20 104.4 286 36.0
Peaxi162Scf00535g00042 Petunia axillaris HOM05D000272 ORTHO05D000164 1.8e-20 104.0 316 34.2
Glyma.11G062300 Glycine max HOM05D000272 ORTHO05D000164 2.3e-20 103.6 269 38.7
Gohir.A12G066900 Gossypium hirsutum HOM05D000272 ORTHO05D000164 2.3e-20 103.6 145 44.8
Nn1g05122 Nelumbo nucifera HOM05D000272 ORTHO05D000164 2.3e-20 103.6 146 46.6
PGR119G0227 Punica granatum HOM05D000272 ORTHO05D000164 5.2e-20 102.4 303 35.3
Gorai.007G207200 Gossypium raimondii HOM05D000272 ORTHO05D000164 6.7e-20 102.1 323 35.3
HanXRQChr11g0327301 Helianthus annuus HOM05D000272 ORTHO05D000164 6.7e-20 102.1 276 37.7
Atru.chr3.491 Acer truncatum HOM05D000272 ORTHO05D000164 8.8e-20 101.7 151 47.7
Nn5g29475 Nelumbo nucifera HOM05D000272 ORTHO05D000164 8.8e-20 101.7 149 47.0
Sabra05G0105000 Salix brachista HOM05D000272 ORTHO05D000164 8.8e-20 101.7 335 33.7
Nitab4.5_0026516g0010 Nicotiana tabacum HOM05D000272 ORTHO05D000164 2.6e-19 100.1 318 31.8
arahy.Tifrunner.gnm1.ann1.DWSH38 Arachis hypogaea HOM05D000272 ORTHO05D000164 4.4e-19 99.4 292 35.6
ECA246G3116 Erigeron canadensis HOM05D000272 ORTHO05D000164 4.4e-19 99.4 279 38.7
Gohir.D11G193800 Gossypium hirsutum HOM05D000272 ORTHO05D000164 4.4e-19 99.4 326 35.0
Aqoxy5G01729 Aquilegia oxysepala HOM05D000272 ORTHO05D000164 5.7e-19 99.0 154 45.5
Glyma.01G179900 Glycine max HOM05D000272 ORTHO05D000164 5.7e-19 99.0 271 36.2
CSS0027889 Camellia sinensis var. sinensis HOM05D000272 ORTHO05D000164 7.5e-19 98.6 170 44.7
Oeu043837.2 Olea europaea HOM05D000272 ORTHO05D000164 9.7e-19 98.2 183 42.1
Nitab4.5_0004932g0010 Nicotiana tabacum HOM05D000272 ORTHO05D000164 1.3e-18 97.8 156 46.8
RcHm_v2.0_Chr2g0102991 Rosa chinensis HOM05D000272 ORTHO05D000164 1.3e-18 97.8 327 33.9
Ca_22241_v3 Cicer arietinum L. HOM05D000272 ORTHO05D000164 2.2e-18 97.1 311 34.7
Actinidia36536 Actinidia chinensis HOM05D000272 ORTHO05D000164 2.8e-18 96.7 327 32.7
Gohir.A11G187300 Gossypium hirsutum HOM05D000272 ORTHO05D000164 2.8e-18 96.7 325 33.2
Lalb_Chr09g0322751 Lupinus albus HOM05D000272 ORTHO05D000164 3.7e-18 96.3 176 42.0
Nitab4.5_0000090g0190 Nicotiana tabacum HOM05D000272 ORTHO05D000164 3.7e-18 96.3 315 30.5
CsaV3_6G042600 Cucumis sativus L. HOM05D000272 ORTHO05D000164 4.8e-18 95.9 139 47.5
Medtr8g078480 Medicago truncatula HOM05D000272 ORTHO05D000164 4.8e-18 95.9 319 31.0
Nitab4.5_0000483g0010 Nicotiana tabacum HOM05D000272 ORTHO05D000164 4.8e-18 95.9 149 47.7
Migut.H00514 Erythranthe guttata HOM05D000272 ORTHO05D000164 8.2e-18 95.1 145 46.9
TAR628G0701 Trochodendron aralioides HOM05D000272 ORTHO05D000164 8.2e-18 95.1 144 47.2
TWI09G0905 Tripterygium wilfordii HOM05D000272 ORTHO05D000164 1.4e-17 94.4 293 33.8
VMungo1215G2826 Vigna mungo HOM05D000272 ORTHO05D000164 1.8e-17 94.0 293 34.1
Lj4g0018259 Lotus japonicus HOM05D000272 ORTHO05D000164 3.1e-17 93.2 344 34.0
Phvul.002G024800 Phaseolus vulgaris HOM05D000272 ORTHO05D000164 3.1e-17 93.2 292 33.9
Actinidia12098 Actinidia chinensis HOM05D000272 ORTHO05D000164 4.1e-17 92.8 328 33.8
MSTRG.2928 Avicennia marina HOM05D000272 ORTHO05D000164 4.1e-17 92.8 309 32.7
MELO3C007500.2 Cucumis melo HOM05D000272 ORTHO05D000164 4.1e-17 92.8 139 47.5
HanXRQChr10g0316241 Helianthus annuus HOM05D000272 ORTHO05D000164 5.3e-17 92.4 237 33.3
TAR376G0831 Trochodendron aralioides HOM05D000272 ORTHO05D000164 5.3e-17 92.4 287 35.9
Hma1.2p1_0739F.1_g211170 Hydrangea macrophylla HOM05D000272 ORTHO05D000164 9.1e-17 91.7 137 49.6
MBI16_g13154_MAGBIO Magnolia biondii HOM05D000272 ORTHO05D000164 9.1e-17 91.7 165 43.6
TAR625G1507 Trochodendron aralioides HOM05D000272 ORTHO05D000164 1.2e-16 91.3 291 37.1
GSVIVG01019043001 Vitis vinifera HOM05D000272 ORTHO05D000164 1.2e-16 91.3 137 44.5
Psat4g090560 Pisum sativum HOM05D000272 ORTHO05D000164 2.0e-16 90.5 181 39.8
FvH4_1g14320 Fragaria vesca HOM05D000272 ORTHO05D000164 2.7e-16 90.1 330 30.0
FAN19G2891 Fragaria x ananassa HOM05D000272 ORTHO05D000164 2.7e-16 90.1 330 30.0
ClCG01G016290 Citrullus lanatus HOM05D000272 ORTHO05D000164 4.5e-16 89.4 144 47.2
DCAR_010957 Daucus carota HOM05D000272 ORTHO05D000164 4.5e-16 89.4 188 45.7
FAN28G1350 Fragaria x ananassa HOM05D000272 ORTHO05D000164 5.9e-16 89.0 336 29.2
Dinv26788 Davidia involucrata HOM05D000272 ORTHO05D000164 7.7e-16 88.6 312 32.4
TAR381G1140 Trochodendron aralioides HOM05D000272 ORTHO05D000164 7.7e-16 88.6 324 31.8
FAN23G0269 Fragaria x ananassa HOM05D000272 ORTHO05D000164 1.0e-15 88.2 299 30.8
Peaxi162Scf00019g00174 Petunia axillaris HOM05D000272 ORTHO05D000164 2.2e-15 87.0 307 30.3
THA.LOC104807560 Tarenaya hassleriana HOM05D000272 ORTHO05D000164 2.9e-15 86.7 161 46.0
TWI73G1113 Tripterygium wilfordii HOM05D000272 ORTHO05D000164 2.9e-15 86.7 296 31.4
Actinidia30994 Actinidia chinensis HOM05D000272 ORTHO05D000164 3.8e-15 86.3 258 35.3
Actinidia19151 Actinidia chinensis HOM05D000272 ORTHO05D000164 1.9e-14 84.0 275 33.1
Oeu032905.1 Olea europaea HOM05D000272 ORTHO05D000164 4.2e-14 82.8 143 41.3
Sopen02g015690 Solanum pennellii HOM05D000272 ORTHO05D000164 4.2e-14 82.8 317 30.0
CAN.G93.16 Capsicum annuum HOM05D000272 ORTHO05D000164 5.5e-14 82.4 136 41.2
Thhalv10000076m.g Eutrema salsugineum HOM05D000272 ORTHO05D000164 7.2e-14 82.0 250 34.8
Oeu060225.1 Olea europaea HOM05D000272 ORTHO05D000164 7.2e-14 82.0 249 33.7
VMungo0251G1749 Vigna mungo HOM05D000272 ORTHO05D000164 7.2e-14 82.0 140 47.1
FAN26G2663 Fragaria x ananassa HOM05D000272 ORTHO05D000164 1.6e-13 80.9 300 30.7
MBI16_g10975_MAGBIO Magnolia biondii HOM05D000272 ORTHO05D000164 1.6e-13 80.9 177 39.0
PGR102G2604 Punica granatum HOM05D000272 ORTHO05D000164 1.6e-13 80.9 250 32.8
Actinidia22573 Actinidia chinensis HOM05D000272 ORTHO05D000164 3.6e-13 79.7 233 33.9
Phvul.003G250500 Phaseolus vulgaris HOM05D000272 ORTHO05D000164 3.6e-13 79.7 140 46.4
BcaC07g40977 Brassica carinata HOM05D000272 ORTHO05D000164 4.7e-13 79.3 249 34.9
BolC8t51546H Brassica oleracea HOM05D000272 ORTHO05D000164 4.7e-13 79.3 249 34.9
PSO541G5604 Papaver somniferum HOM05D000272 ORTHO05D000164 4.7e-13 79.3 193 35.2
ECA232G3150 Erigeron canadensis HOM05D000272 ORTHO05D000164 6.1e-13 79.0 284 32.7
C08p39750 Brassica napus HOM05D000272 ORTHO05D000164 1.4e-12 77.8 248 34.3
CDE04G0309 Ceratophyllum demersum HOM05D000272 ORTHO05D000164 1.4e-12 77.8 275 31.6
Solyc02g065490.4 Solanum lycopersicum HOM05D000272 ORTHO05D000164 1.8e-12 77.4 317 29.0
Glyma.16G142800 Glycine max HOM05D000272 ORTHO05D000164 3.0e-12 76.6 121 46.3
Zm00001eb056260 Zea mays HOM05D000272 ORTHO05D000164 3.0e-12 76.6 138 42.8
CSS0026023 Camellia sinensis var. sinensis HOM05D000272 ORTHO05D000164 5.2e-12 75.9 144 42.4
CDE01G0581 Ceratophyllum demersum HOM05D000272 ORTHO05D000164 5.2e-12 75.9 285 29.1
Glyma.02G060002 Glycine max HOM05D000272 ORTHO05D000164 5.2e-12 75.9 138 41.3
HanXRQChr15g0473021 Helianthus annuus HOM05D000272 ORTHO05D000164 5.2e-12 75.9 281 30.6
AL7G14110 Arabidopsis lyrata HOM05D000272 ORTHO05D000164 6.8e-12 75.5 308 31.2
Lsat_1_v5_gn_4_176301 Lactuca sativa HOM05D000272 ORTHO05D000164 6.8e-12 75.5 289 31.5
Os03g0732100 Oryza sativa ssp. japonica HOM05D000272 ORTHO05D000164 6.8e-12 75.5 139 43.9
Actinidia15292 Actinidia chinensis HOM05D000272 ORTHO05D000164 8.8e-12 75.1 247 31.2
BraA09t41068Z Brassica rapa HOM05D000272 ORTHO05D000164 1.2e-11 74.7 247 34.0
BcaC02g08547 Brassica carinata HOM05D000272 ORTHO05D000164 2.0e-11 73.9 260 31.2
C04p53100 Brassica napus HOM05D000272 ORTHO05D000164 2.0e-11 73.9 260 31.2
BolC4t26868H Brassica oleracea HOM05D000272 ORTHO05D000164 2.0e-11 73.9 260 31.2
A04p18110 Brassica napus HOM05D000272 ORTHO05D000164 2.6e-11 73.6 256 32.0
BraA04t17429Z Brassica rapa HOM05D000272 ORTHO05D000164 2.6e-11 73.6 256 32.0
Dinv39373 Davidia involucrata HOM05D000272 ORTHO05D000164 2.6e-11 73.6 135 43.0
Gohir.D03G017900 Gossypium hirsutum HOM05D000272 ORTHO05D000164 2.6e-11 73.6 124 42.7
Gorai.003G018100 Gossypium raimondii HOM05D000272 ORTHO05D000164 2.6e-11 73.6 124 42.7
Sp4g02690 Schrenkiella parvula HOM05D000272 ORTHO05D000164 2.6e-11 73.6 247 34.4
THA.LOC104819815 Tarenaya hassleriana HOM05D000272 ORTHO05D000164 3.4e-11 73.2 138 44.2
Gohir.A02G162533 Gossypium hirsutum HOM05D000272 ORTHO05D000164 5.7e-11 72.4 125 42.4
A09p56780 Brassica napus HOM05D000272 ORTHO05D000164 7.5e-11 72.0 254 33.1
MSTRG.24309 Avicennia marina HOM05D000272 ORTHO05D000164 9.8e-11 71.6 144 37.5
PSO675G0248 Papaver somniferum HOM05D000272 ORTHO05D000164 9.8e-11 71.6 198 32.3
Aqoxy6G00998 Aquilegia oxysepala HOM05D000272 ORTHO05D000164 1.7e-10 70.9 162 38.3
Medtr5g018860 Medicago truncatula HOM05D000272 ORTHO05D000164 1.7e-10 70.9 167 41.3
HanXRQChr09g0265121 Helianthus annuus HOM05D000272 ORTHO05D000164 2.2e-10 70.5 279 29.0
Sed0005045 Sechium edule HOM05D000272 ORTHO05D000164 2.2e-10 70.5 247 30.0
CANSAT01G1911 Cannabis sativa HOM05D000272 ORTHO05D000164 2.8e-10 70.1 135 40.7
DCAR_025660 Daucus carota HOM05D000272 ORTHO05D000164 2.8e-10 70.1 323 28.2
Sp7g34520 Schrenkiella parvula HOM05D000272 ORTHO05D000164 2.8e-10 70.1 133 39.8
Carub.0007s0345 Capsella rubella HOM05D000272 ORTHO05D000164 3.7e-10 69.7 136 44.1
Sopen04g033400 Solanum pennellii HOM05D000272 ORTHO05D000164 4.8e-10 69.3 178 36.5
Nitab4.5_0000110g0100 Nicotiana tabacum HOM05D000272 ORTHO05D000164 8.3e-10 68.6 188 35.1
A01p02050 Brassica napus HOM05D000272 ORTHO05D000164 2.4e-09 67.0 265 31.7
BraA01t00194Z Brassica rapa HOM05D000272 ORTHO05D000164 2.4e-09 67.0 265 31.7
CDE02G2932 Ceratophyllum demersum HOM05D000272 ORTHO05D000164 2.4e-09 67.0 285 29.1
AT4G36870 Arabidopsis thaliana HOM05D000272 ORTHO05D000164 7.0e-09 65.5 310 29.4
Lj7A13T42 Lonicera japonica HOM05D000272 ORTHO05D000164 7.0e-09 65.5 283 31.1
Sed0011765 Sechium edule HOM05D000272 ORTHO05D000164 9.1e-09 65.1 141 41.1
MSTRG.1306 Avicennia marina HOM05D000272 ORTHO05D000164 2.0e-08 63.9 178 34.3
Oeu009595.1 Olea europaea HOM05D000272 ORTHO05D000164 2.0e-08 63.9 140 37.1
Peaxi162Scf02754g10013 Petunia axillaris HOM05D000272 ORTHO05D000164 2.0e-08 63.9 188 33.5
BcaC01g00436 Brassica carinata HOM05D000272 ORTHO05D000164 4.5e-08 62.8 133 37.6
C03p79800 Brassica napus HOM05D000272 ORTHO05D000164 4.5e-08 62.8 133 37.6
BolC3t20230H Brassica oleracea HOM05D000272 ORTHO05D000164 5.9e-08 62.4 133 36.8
BolC1t00215H Brassica oleracea HOM05D000272 ORTHO05D000164 7.7e-08 62.0 272 30.1
CAN.G371.121 Capsicum annuum HOM05D000272 ORTHO05D000164 2.2e-07 60.5 145 33.8
ClCG02G012970 Citrullus lanatus HOM05D000272 ORTHO05D000164 2.9e-07 60.1 252 28.6
PSO700G0218 Papaver somniferum HOM05D000272 ORTHO05D000164 3.8e-07 59.7 142 40.1
Dinv12162 Davidia involucrata HOM05D000272 ORTHO05D028625 6.5e-07 58.9 90 45.6
CARHR245240 Cardamine hirsuta HOM05D000272 ORTHO05D000164 8.5e-07 58.5 303 27.7
Aa31LG7G13130 Aethionema arabicum HOM05D000272 ORTHO05D000164 1.9e-06 57.4 41 65.9
MSTRG.22286 Avicennia marina HOM05D000272 ORTHO05D000164 1.9e-06 57.4 181 29.8
PSO170G5551 Papaver somniferum HOM05D000272 ORTHO05D000164 1.9e-06 57.4 190 32.6
CARHR114590 Cardamine hirsuta HOM05D000272 ORTHO05D000164 3.2e-06 56.6 33 75.8
BcaNung03523 Brassica carinata HOM05D000272 ORTHO05D000164 5.5e-06 55.8 255 27.8
C01p02230 Brassica napus HOM05D000272 ORTHO05D000164 5.5e-06 55.8 255 27.8
MELO3C020878.2 Cucumis melo HOM05D000272 ORTHO05D000164 5.5e-06 55.8 238 31.9
Nitab4.5_0011041g0020 Nicotiana tabacum HOM05D000272 ORTHO05D000164 7.2e-06 55.5 44 59.1
CsaV3_2G017060 Cucumis sativus L. HOM05D000272 ORTHO05D000164 9.4e-06 55.1 254 28.7


User provided reference genes

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