Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62008030 Chenopodium quinoa HOM05D006999 ORTHO05D008936 0.0e+00 1177.9 652 100.0
Ah.02g126330 Amaranthus hybridus HOM05D006999 ORTHO05D008936 2.8e-248 862.1 645 77.1
EL10Ac6g14872 Beta vulgaris HOM05D006999 ORTHO05D008936 5.9e-222 774.6 646 71.1
Sc03g0001020 Simmondsia chinensis HOM05D006999 ORTHO05D008936 1.2e-201 707.2 653 65.2
QL06p044626 Quercus lobata HOM05D006999 ORTHO05D008936 1.8e-178 630.2 655 50.7
Dinv29387 Davidia involucrata HOM05D006999 ORTHO05D008936 3.1e-170 602.8 547 56.7
CSS0009159 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 3.8e-168 595.9 640 49.8
CSS0003698 Camellia sinensis var. sinensis HOM05D006999 ORTHO05D008936 1.9e-167 593.6 640 49.7
Dinv39939 Davidia involucrata HOM05D006999 ORTHO05D008936 4.2e-167 592.4 646 48.8
PGSC0003DMG400001186 Solanum tuberosum HOM05D006999 ORTHO05D008936 5.4e-167 592.0 651 55.6
CANSAT01G1763 Cannabis sativa HOM05D006999 ORTHO05D008936 6.0e-166 588.6 646 48.9
GSVIVG01019040001 Vitis vinifera HOM05D006999 ORTHO05D008936 7.8e-166 588.2 652 48.3
MSTRG.15411 Avicennia marina HOM05D006999 ORTHO05D008936 1.0e-165 587.8 654 49.1
Sopen02g015710 Solanum pennellii HOM05D006999 ORTHO05D008936 2.3e-165 586.6 651 55.1
CiPaw.01G031400 Carya illinoinensis HOM05D006999 ORTHO05D008936 6.6e-165 585.1 664 47.7
Cc05_g07730 Coffea canephora HOM05D006999 ORTHO05D008936 3.3e-164 582.8 641 48.2
Migut.K00852 Erythranthe guttata HOM05D006999 ORTHO05D008936 1.3e-163 580.9 653 47.9
Cpa.g.sc15.132 Carica papaya HOM05D006999 ORTHO05D008936 2.8e-163 579.7 648 47.7
Solyc02g065510.1 Solanum lycopersicum HOM05D006999 ORTHO05D008936 4.8e-163 578.9 652 54.9
Prupe.7G147200 Prunus persica HOM05D006999 ORTHO05D008936 4.0e-162 575.9 649 55.5
DCAR_026261 Daucus carota HOM05D006999 ORTHO05D008936 9.0e-162 574.7 641 48.4
Oeu049321.1 Olea europaea HOM05D006999 ORTHO05D008936 8.4e-160 568.2 649 47.5
RcHm_v2.0_Chr2g0102951 Rosa chinensis HOM05D006999 ORTHO05D008936 8.4e-160 568.2 654 46.9
Oeu049309.1 Olea europaea HOM05D006999 ORTHO05D008936 2.4e-159 566.6 654 46.9
Thecc.01G043300 Theobroma cacao HOM05D006999 ORTHO05D008936 3.9e-157 559.3 637 47.3
Manes.13G134700 Manihot esculenta HOM05D006999 ORTHO05D008936 3.3e-156 556.2 647 46.1
arahy.Tifrunner.gnm1.ann1.ZB5P2M Arachis hypogaea HOM05D006999 ORTHO05D008936 7.4e-156 555.1 658 49.8
SalBow1G0035 Salvia bowleyana HOM05D006999 ORTHO05D008936 1.3e-155 554.3 619 48.3
ECA232G3871 Erigeron canadensis HOM05D006999 ORTHO05D008936 2.1e-155 553.5 627 53.0
MD15G1270900 Malus domestica HOM05D006999 ORTHO05D008936 6.2e-155 552.0 628 47.6
SGA_v2.0_scaffold62G21537 Striga asiatica HOM05D006999 ORTHO05D008936 6.9e-154 548.5 647 47.8
Gohir.D12G067100 Gossypium hirsutum HOM05D006999 ORTHO05D008936 9.0e-154 548.1 637 46.2
Nitab4.5_0004292g0030 Nicotiana tabacum HOM05D006999 ORTHO05D008936 1.5e-153 547.4 658 52.4
Phvul.002G025400 Phaseolus vulgaris HOM05D006999 ORTHO05D008936 4.5e-153 545.8 661 52.8
Rhsim02G0225000 Rhododendron simsii HOM05D006999 ORTHO05D008936 4.5e-153 545.8 551 51.9
Gorai.008G070500 Gossypium raimondii HOM05D006999 ORTHO05D008936 7.6e-153 545.0 637 46.0
Potri.005G128600 Populus trichocarpa HOM05D006999 ORTHO05D008936 9.9e-153 544.7 653 45.5
Sabra05G0104700 Salix brachista HOM05D006999 ORTHO05D008936 9.9e-153 544.7 641 45.4
PSO541G6186 Papaver somniferum HOM05D006999 ORTHO05D008936 2.2e-152 543.5 650 45.8
vmacro00136 Vaccinium macrocarpon HOM05D006999 ORTHO05D008936 4.9e-152 542.3 649 53.5
FAN23G0790 Fragaria x ananassa HOM05D006999 ORTHO05D008936 1.9e-151 540.4 645 51.9
VMungo1215G1670 Vigna mungo HOM05D006999 ORTHO05D008936 1.9e-151 540.4 661 52.2
Gohir.A12G066700 Gossypium hirsutum HOM05D006999 ORTHO05D008936 5.5e-151 538.9 636 45.0
Rhsim02G0229300 Rhododendron simsii HOM05D006999 ORTHO05D008936 1.2e-150 537.7 649 51.3
Duzib147G0594 Durio zibethinus HOM05D006999 ORTHO05D008936 1.8e-149 533.9 650 44.6
Nitab4.5_0000090g0200 Nicotiana tabacum HOM05D006999 ORTHO05D008936 1.8e-149 533.9 658 51.7
Cfa004253 Carpinus fangiana HOM05D006999 ORTHO05D008936 5.1e-149 532.3 625 46.7
THA.LOC104826827 Tarenaya hassleriana HOM05D006999 ORTHO05D008936 2.1e-147 526.9 645 45.0
Aqoxy6G01000 Aquilegia oxysepala HOM05D006999 ORTHO05D008936 2.8e-147 526.6 624 45.5
Lj2g0003627 Lotus japonicus HOM05D006999 ORTHO05D008936 2.8e-147 526.6 643 44.9
CAN.G93.18 Capsicum annuum HOM05D006999 ORTHO05D008936 3.1e-146 523.1 652 52.5
FvH4_2g07140 Fragaria vesca HOM05D006999 ORTHO05D008936 3.1e-146 523.1 627 45.3
AL8G44870 Arabidopsis lyrata HOM05D006999 ORTHO05D008936 9.0e-146 521.5 540 51.5
TWI73G1021 Tripterygium wilfordii HOM05D006999 ORTHO05D008936 9.0e-146 521.5 636 49.7
Aa31LG1G15180 Aethionema arabicum HOM05D006999 ORTHO05D008936 1.2e-145 521.2 653 44.7
AT5G66631 Arabidopsis thaliana HOM05D006999 ORTHO05D008936 6.5e-144 515.4 640 44.5
CARHR281110 Cardamine hirsuta HOM05D006999 ORTHO05D008936 1.1e-143 514.6 545 50.8
Sp2g30070 Schrenkiella parvula HOM05D006999 ORTHO05D008936 4.2e-143 512.7 647 44.5
BcaC06g34726 Brassica carinata HOM05D006999 ORTHO05D008936 7.1e-143 511.9 645 45.1
BolC7t43049H Brassica oleracea HOM05D006999 ORTHO05D008936 3.5e-142 509.6 644 45.2
Lj4P134T41 Lonicera japonica HOM05D006999 ORTHO05D008936 4.6e-142 509.2 517 50.9
Thhalv10005592m.g Eutrema salsugineum HOM05D006999 ORTHO05D008936 1.3e-141 507.7 555 50.1
Oeu049317.1 Olea europaea HOM05D006999 ORTHO05D008936 1.1e-140 504.6 551 49.5
Peaxi162Scf00019g00154 Petunia axillaris HOM05D006999 ORTHO05D008936 1.5e-140 504.2 655 44.3
BraA07t29457Z Brassica rapa HOM05D006999 ORTHO05D008936 7.4e-140 501.9 539 50.3
BcaB02g10006 Brassica carinata HOM05D006999 ORTHO05D008936 2.1e-139 500.4 546 49.1
A07p17310 Brassica napus HOM05D006999 ORTHO05D008936 3.7e-139 499.6 543 49.4
Ca_24822_v3 Cicer arietinum L. HOM05D006999 ORTHO05D008936 6.5e-136 488.8 642 42.7
Lalb_Chr09g0322731 Lupinus albus HOM05D006999 ORTHO05D008936 1.6e-131 474.2 659 45.7
Nn5g29479 Nelumbo nucifera HOM05D006999 ORTHO05D008936 3.7e-131 473.0 636 42.8
TAR381G1039 Trochodendron aralioides HOM05D006999 ORTHO05D008936 1.1e-130 471.5 650 48.0
TPR.G34465 Trifolium pratense HOM05D006999 ORTHO05D008936 8.5e-128 461.8 629 43.1
Medtr5g019030 Medicago truncatula HOM05D006999 ORTHO05D008936 1.9e-127 460.7 629 48.3
Glyma.11G063000 Glycine max HOM05D006999 ORTHO05D008936 1.0e-125 454.9 659 46.6
Eucgr.I02485 Eucalyptus grandis HOM05D006999 ORTHO05D008936 5.1e-125 452.6 658 40.3
HanXRQChr09g0265111 Helianthus annuus HOM05D006999 ORTHO05D008936 1.8e-122 444.1 645 39.2
Ciclev10027580m.g Citrus clementina HOM05D006999 ORTHO05D008936 1.5e-121 441.0 527 45.9
Haze_15147 Corylus avellana HOM05D000909 ORTHO05D000928 1.9e-119 434.1 653 39.5
Atru.chr3.494 Acer truncatum HOM05D006999 ORTHO05D008936 4.2e-119 433.0 507 44.6
RcHm_v2.0_Chr2g0102871 Rosa chinensis HOM05D006999 ORTHO05D008936 4.2e-119 433.0 515 45.6
C07p25190 Brassica napus HOM05D006999 ORTHO05D008936 7.9e-118 428.7 532 44.0
Actinidia36538 Actinidia chinensis HOM05D006999 ORTHO05D008936 3.9e-117 426.4 659 39.6
FvH4_1g14280 Fragaria vesca HOM05D006999 ORTHO05D008936 6.7e-117 425.6 507 44.2
Carub.0008s2788 Capsella rubella HOM05D006999 ORTHO05D008936 3.7e-115 419.9 506 44.7
Hma1.2p1_2980F.1_g331210 Hydrangea macrophylla HOM05D006999 ORTHO05D008936 2.6e-113 413.7 463 48.4
MBI16_g10978_MAGBIO Magnolia biondii HOM05D006999 ORTHO05D003554 1.1e-111 408.3 625 45.9
HPP92_025826 Vanilla planifolia HOM05D006999 ORTHO05D008936 2.7e-110 403.7 626 38.0
CDE01G0819 Ceratophyllum demersum HOM05D006999 ORTHO05D008936 5.2e-109 399.4 648 37.2
Psat2g162640 Pisum sativum HOM05D006999 ORTHO05D008936 2.6e-108 397.1 634 43.4
ATR0782G111 Amborella trichopoda HOM05D006999 ORTHO05D008936 1.1e-95 355.1 679 33.4
Dinv18613 Davidia involucrata HOM05D006999 ORTHO05D008936 1.1e-95 355.1 627 36.5
Dinv26229 Davidia involucrata HOM05D006999 ORTHO05D008936 1.1e-95 355.1 627 36.5
unitig_748.g8403 Utricularia gibba HOM05D006999 ORTHO05D008936 9.8e-92 342.0 372 48.4
Os01g0167750 Oryza sativa ssp. japonica HOM05D006999 ORTHO05D008936 1.1e-82 312.0 646 33.1
Haze_25752 Corylus avellana HOM05D006999 ORTHO05D008936 1.8e-82 311.2 672 32.3
Cfa021547 Carpinus fangiana HOM05D006999 ORTHO05D008936 3.6e-78 297.0 647 35.7
SEGI_35610 Sequoiadendron giganteum HOM05D006999 ORTHO05D008936 4.9e-75 286.6 636 30.5
Zm00001eb123240 Zea mays HOM05D006999 ORTHO05D008936 5.0e-72 276.6 616 32.3
Cfa003411 Carpinus fangiana HOM05D006999 ORTHO05D008936 7.6e-52 209.5 474 30.8
Glyma.01G179251 Glycine max HOM05D006999 ORTHO05D008936 8.4e-51 206.1 272 45.2
FAN28G3023 Fragaria x ananassa HOM05D006999 ORTHO05D008936 1.6e-41 175.3 171 50.3
COL.COLO4_22153 Corchorus olitorius HOM05D000225 ORTHO05D003554 2.1e-38 164.9 226 42.9
unitig_748.g8404 Utricularia gibba HOM05D006999 ORTHO05D008936 1.7e-35 155.2 233 39.5
Glyma.01G179201 Glycine max HOM05D006999 ORTHO05D008936 6.7e-32 143.3 226 58.8
Aa31LG1G15170 Aethionema arabicum HOM05D000909 ORTHO05D008936 9.7e-23 112.8 150 44.7
EL10Ac6g14214 Beta vulgaris HOM05D006999 ORTHO05D008936 7.2e-18 96.7 80 60.0
MD02G1156600 Malus domestica HOM05D006999 ORTHO05D008936 4.3e-15 87.4 151 36.4
Pp3c4_14140 Physcomitrium patens HOM05D006999 ORTHO05D008936 1.4e-13 82.4 171 28.1
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 8.5e-11 73.2 338 24.3
HanXRQChr09g0268161 Helianthus annuus HOM05D006999 ORTHO05D008936 7.2e-10 70.1 150 29.3
Actinidia12102 Actinidia chinensis HOM05D006999 ORTHO05D008936 1.2e-09 69.3 150 30.0
FvH4_1g14250 Fragaria vesca HOM05D000909 ORTHO05D000928 3.0e-08 64.7 161 30.4
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 8.8e-08 63.2 343 23.0
Mapoly0026s0011 Marchantia polymorpha HOM05D006999 ORTHO05D008936 8.8e-08 63.2 96 36.5
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 1.1e-07 62.8 343 22.7
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 1.5e-07 62.4 178 27.0
Carub.0005s2919 Capsella rubella HOM05D000424 ORTHO05D002854 1.5e-07 62.4 165 26.7
Mapoly0001s0055 Marchantia polymorpha HOM05D004079 ORTHO05D005437 2.6e-07 61.6 160 23.1
Pp3c1_6490 Physcomitrium patens HOM05D006749 ORTHO05D008352 2.6e-07 61.6 141 29.8
Sp5g00960 Schrenkiella parvula HOM05D000424 ORTHO05D002854 3.3e-07 61.2 149 28.9
MBI11_g40920_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 5.7e-07 60.5 126 27.0
Thhalv10005842m.g Eutrema salsugineum HOM05D000424 ORTHO05D002854 7.4e-07 60.1 165 26.1
Psat2g188440 Pisum sativum HOM05D000424 ORTHO05D000355 7.4e-07 60.1 133 30.1
AT3G22670 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 9.7e-07 59.7 182 24.7
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 1.7e-06 58.9 175 25.1
Solyc01g097130.4 Solanum lycopersicum HOM05D000424 ORTHO05D002854 2.2e-06 58.5 162 25.3
PGSC0003DMG400027516 Solanum tuberosum HOM05D000424 ORTHO05D002854 2.2e-06 58.5 161 24.2
Ah.02g128080 Amaranthus hybridus HOM05D000424 ORTHO05D000355 2.8e-06 58.2 132 28.8
Peaxi162Scf00432g00072 Petunia axillaris HOM05D000001 ORTHO05D010008 2.8e-06 58.2 163 24.5
Sabra14G0089900 Salix brachista HOM05D000424 ORTHO05D002854 2.8e-06 58.2 166 26.5
MBI19_g17402_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D002854 4.8e-06 57.4 156 28.2
Nitab4.5_0000417g0110 Nicotiana tabacum HOM05D000001 ORTHO05D010008 4.8e-06 57.4 182 24.2
Sopen01g040810 Solanum pennellii HOM05D000424 ORTHO05D002854 4.8e-06 57.4 164 26.8
AagrBONN_evm.TU.Sc2ySwM_344.143 Anthoceros agrestis HOM05D004079 ORTHO05D008936 6.3e-06 57.0 113 27.4
A10p28220 Brassica napus HOM05D000001 ORTHO05D004269 8.2e-06 56.6 166 24.1
BraA10t44871Z Brassica rapa HOM05D000001 ORTHO05D004269 8.2e-06 56.6 166 24.1
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 8.2e-06 56.6 339 22.7
MELO3C004182.2 Cucumis melo HOM05D000424 ORTHO05D002854 8.2e-06 56.6 258 24.8


User provided reference genes

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