Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 0.0e+00 1192.9 618 100.0
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 0.0e+00 1142.5 618 94.0
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 1.2e-277 959.5 620 79.5
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 1.6e-237 826.2 621 68.1
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 5.4e-233 811.2 613 66.7
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 7.0e-233 810.8 614 66.3
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 5.0e-231 804.7 623 69.0
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 6.6e-231 804.3 619 65.3
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.1e-228 797.0 623 65.2
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 2.6e-227 792.3 620 65.2
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.2e-226 789.3 619 64.0
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 3.7e-226 788.5 632 65.8
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 8.3e-226 787.3 632 65.8
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 1.4e-225 786.6 621 64.7
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 5.4e-225 784.6 619 63.8
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 1.6e-224 783.1 620 65.3
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 1.3e-223 780.0 623 66.6
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 6.6e-223 777.7 624 63.0
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 8.6e-223 777.3 633 64.1
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 2.5e-222 775.8 621 63.9
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 7.3e-222 774.2 620 62.7
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 4.7e-221 771.5 621 65.9
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 8.1e-221 770.8 620 63.1
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 5.2e-220 768.1 621 61.2
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 6.8e-220 767.7 622 63.2
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 8.9e-220 767.3 623 62.3
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 1.5e-219 766.5 622 63.2
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 2.6e-219 765.8 621 63.1
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 1.3e-218 763.5 618 63.1
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.9e-217 759.6 617 63.4
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 1.9e-217 759.6 621 62.6
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.9e-217 759.6 618 62.6
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 4.6e-216 755.0 623 62.8
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 6.0e-216 754.6 618 63.1
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.0e-215 753.8 623 62.8
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 3.9e-215 751.9 620 62.3
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 3.9e-215 751.9 623 62.9
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 1.1e-214 750.4 627 64.0
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.9e-214 749.6 570 68.8
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 9.6e-214 747.3 611 62.2
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 1.2e-213 746.9 570 66.8
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 1.6e-213 746.5 619 63.0
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 3.1e-212 742.3 626 61.2
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 3.1e-212 742.3 620 62.1
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 4.0e-212 741.9 620 61.8
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 9.0e-212 740.7 618 61.2
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 9.0e-212 740.7 625 60.8
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 2.6e-211 739.2 620 60.5
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 9.9e-211 737.3 625 61.6
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 1.7e-210 736.5 618 61.3
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 1.4e-209 733.4 620 62.1
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 4.2e-209 731.9 620 60.8
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 1.6e-208 729.9 618 60.0
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 7.8e-208 727.6 623 61.2
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 1.0e-207 727.2 622 60.8
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 2.3e-207 726.1 630 62.1
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 5.6e-206 721.5 618 59.9
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 5.6e-206 721.5 627 61.4
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 2.8e-205 719.2 604 60.4
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 4.0e-204 715.3 620 59.8
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 1.2e-203 713.8 616 60.2
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 1.5e-203 713.4 618 59.4
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 2.0e-203 713.0 628 59.7
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.0e-203 713.0 623 59.2
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 2.9e-202 709.1 619 60.3
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 8.4e-202 707.6 615 59.0
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 8.4e-202 707.6 628 58.1
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 2.4e-201 706.1 615 58.7
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 7.1e-201 704.5 618 60.4
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 3.5e-200 702.2 616 59.3
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 1.0e-199 700.7 625 58.6
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 1.8e-199 699.9 637 58.6
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 3.0e-199 699.1 637 57.5
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 3.9e-199 698.7 627 59.3
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 1.9e-198 696.4 609 58.3
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 1.9e-198 696.4 625 58.1
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 4.3e-198 695.3 604 58.8
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 7.4e-198 694.5 606 58.3
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 2.1e-197 693.0 606 58.1
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.6e-195 686.0 670 54.6
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 4.5e-195 685.3 630 59.4
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 7.6e-195 684.5 621 57.6
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 1.7e-194 683.3 732 53.1
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 7.1e-193 677.9 625 57.8
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 2.1e-192 676.4 628 57.0
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.0e-191 674.1 640 57.2
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 1.5e-190 670.2 643 56.3
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 2.5e-190 669.5 598 59.2
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.6e-189 666.8 658 54.3
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.4e-188 663.7 619 57.4
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.2e-187 660.6 619 57.0
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 3.2e-185 652.5 681 52.0
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 1.8e-183 646.7 618 55.0
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 6.7e-183 644.8 668 53.1
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 7.6e-179 631.3 736 49.9
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 2.8e-173 612.8 646 52.0
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 1.8e-172 610.1 516 61.6
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 8.8e-167 591.3 625 50.2
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.5e-166 590.5 615 52.8
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 6.3e-165 585.1 625 51.8
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 3.1e-164 582.8 618 51.5
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 2.7e-160 569.7 566 52.3
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 2.6e-158 563.1 606 49.7
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 1.1e-156 557.8 606 48.7
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 4.7e-152 542.3 515 58.1
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.4e-151 540.8 447 66.9
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 6.3e-149 531.9 654 48.9
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 7.3e-129 465.3 436 55.5
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.3e-122 443.7 413 58.8
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.1e-116 424.9 412 57.3
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 3.5e-115 419.9 326 63.2
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 1.9e-113 414.1 337 59.9
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.8e-112 410.2 400 57.5
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.2e-109 400.6 412 55.1
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.9e-108 397.5 410 54.6
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 9.2e-108 395.2 446 49.3
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.1e-106 389.4 413 54.0
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.9e-105 387.5 416 53.1
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 8.9e-103 378.6 382 51.8
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.2e-96 355.9 403 51.4
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 1.3e-93 348.2 252 72.6
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.2e-91 341.7 415 49.2
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 2.7e-91 340.5 486 38.9
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 2.1e-88 330.9 209 76.1
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 3.6e-88 330.1 468 38.2
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 3.3e-73 280.4 507 36.9
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 3.1e-71 273.9 523 33.1
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.2e-70 271.9 532 32.0
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 7.2e-60 236.1 168 69.0
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 3.1e-55 220.7 524 28.4
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 3.8e-53 213.8 419 34.4
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 5.1e-50 203.4 237 50.6
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.1e-47 195.7 237 49.4
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 1.2e-43 182.2 213 47.9
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.5e-41 175.3 109 78.9
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 7.7e-38 162.9 104 73.1
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.2e-33 149.1 113 64.6
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 3.7e-32 144.1 98 70.4
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 7.2e-28 129.8 109 61.5
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 4.4e-25 120.6 98 59.2
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.6e-22 112.1 77 71.4
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 2.3e-21 108.2 96 54.2
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 9.5e-20 102.8 212 34.4
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 3.6e-19 100.9 93 53.8
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 3.6e-19 100.9 86 55.8
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 3.2e-15 87.8 69 60.9
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 3.2e-15 87.8 69 60.9
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 5.4e-15 87.0 168 35.7
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 2.0e-14 85.1 89 44.9
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 3.9e-13 80.9 71 54.9
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 8.6e-13 79.7 69 56.5
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.5e-12 79.0 44 75.0
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.5e-12 79.0 44 75.0
Nn4g24499 Nelumbo nucifera HOM05D000723 ORTHO05D278618 4.4e-09 67.4 96 41.7
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 4.1e-07 60.8 52 51.9
Ca_21414_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 5.4e-07 60.5 219 26.9
Ca_22573_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 5.4e-07 60.5 227 26.4
Aqoxy3G01101 Aquilegia oxysepala HOM05D000300 ORTHO05D008589 1.2e-06 59.3 230 23.9
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 1.2e-06 59.3 181 23.8
TPR.G34661 Trifolium pratense HOM05D000300 ORTHO05D008589 2.0e-06 58.5 229 23.6
Lj4g0001854 Lotus japonicus HOM05D000300 ORTHO05D008589 2.7e-06 58.2 229 24.5
Peaxi162Scf00025g00002 Petunia axillaris HOM05D003028 ORTHO05D003465 2.7e-06 58.2 143 25.2
Potri.005G212400 Populus trichocarpa HOM05D003028 ORTHO05D003465 4.6e-06 57.4 143 25.2
VMungo0251G3375 Vigna mungo HOM05D000300 ORTHO05D008589 6.0e-06 57.0 225 27.1
arahy.Tifrunner.gnm1.ann1.01S097 Arachis hypogaea HOM05D000300 ORTHO05D008589 7.8e-06 56.6 226 27.9
Psat4g115000 Pisum sativum HOM05D000300 ORTHO05D008589 7.8e-06 56.6 221 24.0


User provided reference genes

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