Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 3.6e-149 531.6 266 100.0
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 2.8e-138 495.4 321 81.9
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 1.3e-127 459.9 314 77.4
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.8e-124 449.5 314 75.8
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 5.2e-124 448.0 314 74.5
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 3.8e-111 405.2 319 65.2
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 6.5e-111 404.4 319 65.2
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 9.5e-110 400.6 319 64.9
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 1.6e-109 399.8 309 66.0
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 2.1e-109 399.4 317 65.0
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 4.7e-109 398.3 310 66.5
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 8.0e-109 397.5 320 64.7
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 8.0e-109 397.5 313 64.9
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 8.0e-109 397.5 319 64.3
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 8.0e-109 397.5 319 64.3
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-108 396.4 319 63.9
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-108 396.4 319 63.9
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 2.3e-108 396.0 313 64.5
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 2.3e-108 396.0 313 64.9
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 5.2e-108 394.8 319 63.6
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 5.2e-108 394.8 321 64.2
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 6.8e-108 394.4 320 63.4
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 6.8e-108 394.4 320 63.4
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 8.8e-108 394.0 319 63.0
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 2.0e-107 392.9 319 63.9
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 2.6e-107 392.5 320 63.8
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 3.4e-107 392.1 309 64.1
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 7.5e-107 391.0 320 63.4
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 9.8e-107 390.6 314 64.0
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 1.7e-106 389.8 314 64.0
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 2.2e-106 389.4 316 63.6
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 4.9e-106 388.3 314 63.1
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 6.3e-106 387.9 314 63.1
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 6.3e-106 387.9 314 63.1
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.1e-105 387.1 300 66.0
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 1.4e-105 386.7 319 63.3
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 1.8e-105 386.3 314 63.1
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.8e-105 386.3 317 62.8
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.8e-105 386.3 309 64.4
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-105 386.3 310 64.2
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 2.4e-105 386.0 312 63.8
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 3.1e-105 385.6 314 63.1
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 3.1e-105 385.6 309 64.1
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 4.1e-105 385.2 320 63.4
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 4.1e-105 385.2 310 64.5
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 5.4e-105 384.8 309 63.8
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 5.4e-105 384.8 320 62.8
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 7.0e-105 384.4 309 63.1
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 7.0e-105 384.4 321 63.9
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 7.0e-105 384.4 301 64.8
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 9.2e-105 384.0 319 62.7
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 1.2e-104 383.6 321 62.9
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 1.6e-104 383.3 310 63.9
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 1.6e-104 383.3 317 62.8
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 1.6e-104 383.3 321 63.2
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 2.0e-104 382.9 314 62.4
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 2.7e-104 382.5 314 61.8
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 2.7e-104 382.5 310 63.9
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.0e-103 380.6 312 63.8
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.0e-103 380.6 312 63.5
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 1.3e-103 380.2 319 63.0
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 1.7e-103 379.8 313 62.3
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 2.3e-103 379.4 314 61.1
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 2.3e-103 379.4 294 64.6
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 2.9e-103 379.0 309 62.5
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 3.8e-103 378.6 314 62.1
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 5.0e-103 378.3 307 63.2
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 8.6e-103 377.5 295 65.4
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 1.5e-102 376.7 307 62.9
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 2.5e-102 375.9 311 61.4
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 5.6e-102 374.8 313 61.0
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 9.5e-102 374.0 320 62.2
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 9.5e-102 374.0 318 61.6
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 6.1e-101 371.3 300 63.3
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 8.0e-101 370.9 337 58.5
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 4.0e-100 368.6 300 63.0
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 4.0e-100 368.6 314 59.6
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 5.2e-100 368.2 300 63.0
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 5.2e-100 368.2 300 63.0
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 5.2e-100 368.2 300 63.0
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 5.2e-100 368.2 300 63.0
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 5.2e-100 368.2 290 65.5
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 5.2e-100 368.2 300 62.7
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 1.2e-99 367.1 300 62.0
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 2.6e-99 365.9 300 62.0
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 2.6e-99 365.9 294 64.3
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 3.4e-99 365.5 300 62.0
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 4.4e-99 365.2 300 61.7
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 5.7e-99 364.8 300 61.7
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 9.8e-99 364.0 321 60.1
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 1.7e-98 363.2 311 60.1
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 2.2e-98 362.8 298 62.1
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 2.2e-98 362.8 298 62.1
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 2.2e-98 362.8 298 62.1
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.2e-98 362.8 320 59.1
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 3.7e-98 362.1 308 60.1
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 3.7e-98 362.1 294 63.6
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 4.9e-98 361.7 289 65.4
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 5.4e-97 358.2 303 59.4
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 7.0e-97 357.8 320 58.8
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 1.2e-96 357.1 321 60.7
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 3.9e-95 352.1 294 61.9
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 4.3e-94 348.6 311 58.2
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 5.6e-94 348.2 255 68.6
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.2e-93 347.1 308 57.1
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.7e-93 345.1 266 65.0
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.7e-93 345.1 266 65.0
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 6.2e-93 344.7 294 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 3.1e-92 342.4 309 57.3
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 4.0e-92 342.0 295 60.3
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.2e-91 340.5 338 54.7
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 3.4e-91 339.0 312 58.3
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 4.4e-91 338.6 291 61.9
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.7e-90 336.7 313 56.9
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 3.7e-90 335.5 256 65.2
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 3.7e-90 335.5 317 59.3
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 2.0e-88 329.7 295 58.3
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 2.7e-88 329.3 294 58.2
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 9.5e-86 320.9 295 60.0
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 1.8e-84 316.6 244 66.0
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 3.2e-81 305.8 350 49.1
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 5.4e-81 305.1 260 61.9
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 3.0e-79 299.3 257 61.5
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 3.3e-78 295.8 250 62.4
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 2.8e-77 292.7 279 58.4
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 3.6e-77 292.4 250 60.8
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 5.2e-76 288.5 279 56.6
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 8.4e-74 281.2 184 74.5
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.6e-72 275.4 223 64.1
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 5.1e-71 271.9 242 58.7
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 9.6e-70 267.7 175 73.7
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 9.6e-70 267.7 314 50.3
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 5.8e-67 258.5 314 47.1
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 7.6e-67 258.1 182 68.7
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 6.2e-61 238.4 292 47.9
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 4.8e-53 212.2 147 69.4
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.2e-53 211.8 196 59.2
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.4e-52 210.7 136 76.5
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 3.9e-47 192.6 176 59.7
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 7.1e-41 171.8 166 56.6
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 5.0e-34 149.1 98 75.5
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.2e-33 145.2 107 67.3
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.0e-31 141.4 107 63.6
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 5.1e-31 139.0 96 70.8
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 2.9e-26 123.2 95 65.3
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.3e-22 109.8 86 64.0
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 6.3e-21 105.5 237 27.8
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 3.4e-19 99.8 106 55.7
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 8.5e-18 95.1 90 56.7
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 1.9e-17 94.0 84 57.1
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.1e-16 90.5 76 59.2
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 3.6e-16 89.7 76 59.2
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 8.0e-16 88.6 82 53.7
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.4e-07 61.2 69 50.7
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.3e-07 60.5 68 47.1
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 4.0e-07 59.7 28 89.3


User provided reference genes

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