Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 4.1e-130 468.0 228 100.0
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.8e-126 455.3 228 95.6
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 9.5e-119 430.3 225 90.7
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.1e-118 429.1 227 90.3
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.5e-116 422.9 225 88.4
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 3.2e-114 415.2 230 86.5
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 3.3e-111 405.2 221 84.6
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 4.3e-111 404.8 235 86.4
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 1.1e-109 400.2 221 84.2
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 1.4e-109 399.8 221 84.2
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 4.0e-109 398.3 221 83.7
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 6.9e-109 397.5 230 80.9
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 9.0e-109 397.1 221 83.3
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 9.0e-109 397.1 221 82.4
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 1.2e-108 396.7 221 82.4
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 1.2e-108 396.7 221 81.9
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 2.0e-108 396.0 221 82.4
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 2.6e-108 395.6 222 81.1
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 2.6e-108 395.6 222 82.0
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 2.6e-108 395.6 223 83.0
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 3.4e-108 395.2 223 82.5
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.4e-108 394.8 223 82.1
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 4.4e-108 394.8 221 81.4
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 4.4e-108 394.8 225 80.9
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 5.8e-108 394.4 224 82.1
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 5.8e-108 394.4 222 80.6
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 5.8e-108 394.4 221 82.8
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 9.9e-108 393.7 221 81.4
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.3e-107 393.3 223 82.1
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.3e-107 393.3 221 82.4
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 1.7e-107 392.9 224 81.2
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 2.9e-107 392.1 221 81.9
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 2.9e-107 392.1 223 80.3
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 2.9e-107 392.1 222 81.5
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 3.8e-107 391.7 220 80.9
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.8e-107 391.7 223 82.1
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 6.4e-107 391.0 222 81.1
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 6.4e-107 391.0 221 81.4
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 6.4e-107 391.0 221 81.0
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 8.4e-107 390.6 222 81.1
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.1e-106 390.2 223 79.8
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 1.1e-106 390.2 220 82.3
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.4e-106 389.8 221 81.4
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 1.9e-106 389.4 221 81.4
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 2.4e-106 389.0 221 80.1
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 2.4e-106 389.0 221 80.1
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 2.4e-106 389.0 222 81.1
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 3.2e-106 388.7 221 81.0
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 3.2e-106 388.7 221 80.1
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 4.2e-106 388.3 216 83.3
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 5.4e-106 387.9 219 81.3
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 5.4e-106 387.9 221 81.0
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 7.1e-106 387.5 222 80.6
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 7.1e-106 387.5 223 80.3
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 9.3e-106 387.1 224 79.0
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 9.3e-106 387.1 219 81.7
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 9.3e-106 387.1 221 81.9
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 9.3e-106 387.1 222 80.6
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 1.6e-105 386.3 221 81.0
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 1.6e-105 386.3 220 81.8
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 1.6e-105 386.3 220 81.8
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 1.6e-105 386.3 220 81.8
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.6e-105 386.3 221 80.1
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.6e-105 386.3 221 79.6
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.6e-105 386.3 221 80.1
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 2.1e-105 386.0 221 81.0
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 2.1e-105 386.0 221 79.2
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 4.6e-105 384.8 220 80.0
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 4.6e-105 384.8 220 81.4
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 4.6e-105 384.8 220 81.4
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 4.6e-105 384.8 221 79.6
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 7.8e-105 384.0 221 79.2
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 7.8e-105 384.0 221 79.2
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 1.0e-104 383.6 222 79.3
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 1.0e-104 383.6 221 80.1
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 1.0e-104 383.6 221 79.6
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 1.3e-104 383.3 220 81.4
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 1.3e-104 383.3 223 79.8
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 1.7e-104 382.9 228 79.4
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 1.7e-104 382.9 223 82.1
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 1.7e-104 382.9 221 80.5
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 1.7e-104 382.9 220 80.9
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.3e-104 382.5 222 78.4
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 3.0e-104 382.1 221 80.1
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.0e-104 382.1 221 79.6
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 3.0e-104 382.1 222 79.3
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 3.9e-104 381.7 220 79.1
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 5.1e-104 381.3 215 80.9
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 6.6e-104 380.9 221 80.5
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 6.6e-104 380.9 221 80.5
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 8.7e-104 380.6 221 80.1
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 8.7e-104 380.6 223 77.1
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 8.7e-104 380.6 249 74.3
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 1.1e-103 380.2 220 80.5
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.1e-103 380.2 221 79.2
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.5e-103 379.8 221 79.2
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 4.3e-103 378.3 221 79.2
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 7.3e-103 377.5 234 76.1
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 1.3e-102 376.7 223 77.1
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 1.3e-102 376.7 222 78.8
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 1.6e-102 376.3 220 80.0
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 1.6e-102 376.3 220 80.0
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 2.8e-102 375.6 220 79.5
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 3.6e-102 375.2 207 81.6
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 6.2e-102 374.4 224 77.7
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 1.8e-101 372.9 207 81.2
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.8e-101 372.9 219 75.3
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.5e-100 369.8 277 65.0
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.6e-100 369.0 221 77.8
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 2.6e-100 369.0 221 76.0
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 3.4e-100 368.6 217 77.0
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 4.5e-100 368.2 221 76.9
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 4.5e-100 368.2 244 72.1
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 7.6e-100 367.5 223 74.0
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 4.9e-99 364.8 217 76.0
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.6e-97 359.8 215 77.2
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 5.1e-96 354.8 221 74.7
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 8.7e-96 354.0 215 75.3
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 7.4e-95 350.9 208 79.8
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 9.3e-90 334.0 223 68.2
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 3.0e-88 328.9 217 69.6
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 4.8e-86 321.6 213 69.5
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 3.1e-85 318.9 222 66.2
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 2.4e-77 292.7 164 86.0
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 2.2e-75 286.2 161 83.9
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 8.5e-75 284.3 185 70.3
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.6e-73 280.0 165 74.5
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 2.1e-73 279.6 153 80.4
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 1.8e-69 266.5 218 57.8
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 6.7e-64 248.1 166 69.9
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 4.1e-61 238.8 215 54.9
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 7.0e-61 238.0 128 79.7
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 1.4e-56 223.8 128 77.3
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 5.2e-56 221.9 213 53.1
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 2.4e-53 213.0 209 48.8
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 1.5e-50 203.8 111 83.8
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.5e-50 203.8 148 71.6
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 8.8e-48 194.5 115 71.3
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 4.8e-46 188.7 112 70.5
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.7e-43 180.3 130 61.5
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 2.0e-36 156.8 112 65.2
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 8.6e-35 151.4 86 74.4
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 8.0e-33 144.8 97 79.4
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 8.9e-32 141.4 220 36.4
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 1.6e-28 130.6 134 47.8
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.0e-27 127.9 66 84.8
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 1.7e-27 127.1 61 91.8
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.3e-27 126.7 75 80.0
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.2e-23 114.4 78 75.6
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 3.4e-23 112.8 83 59.0
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.2e-21 106.3 58 70.7
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 2.0e-20 103.6 54 83.3
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 3.3e-18 96.3 61 80.3
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 6.2e-17 92.0 64 71.9
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 8.1e-17 91.7 61 77.0
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 4.0e-16 89.4 64 65.6
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 4.4e-15 85.9 65 69.2
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 7.5e-15 85.1 100 47.0
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.7e-14 84.0 128 43.0
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 1.2e-12 77.8 54 74.1
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.7e-12 76.6 51 72.5
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 4.3e-10 69.3 54 59.3
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 8.9e-08 61.6 52 63.5
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.7e-06 57.4 35 80.0


User provided reference genes

Program Settings