Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 5.3e-248 860.5 425 100.0
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.7e-244 848.2 425 98.4
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 2.0e-215 752.3 425 85.6
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 1.1e-200 703.4 425 78.4
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 2.3e-182 642.5 425 72.9
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 9.6e-181 637.1 425 72.7
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 9.6e-181 637.1 425 72.7
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 2.1e-180 636.0 425 71.5
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 1.5e-178 629.8 425 70.8
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 1.3e-177 626.7 425 69.6
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 1.7e-177 626.3 425 70.8
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 2.9e-177 625.5 425 70.8
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 8.4e-177 624.0 425 70.1
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.9e-176 622.9 425 71.3
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 1.9e-176 622.9 425 71.3
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 7.1e-176 620.9 425 70.4
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.6e-175 619.8 425 70.8
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 1.6e-175 619.8 425 70.6
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 2.1e-175 619.4 425 70.4
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 3.0e-174 615.5 425 69.4
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 3.9e-174 615.1 427 69.8
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 1.1e-173 613.6 425 69.2
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.6e-172 609.8 425 68.2
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.6e-172 609.8 425 68.2
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.1e-172 609.4 425 68.2
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 2.1e-172 609.4 425 68.7
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 2.8e-172 609.0 425 69.6
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 4.0e-171 605.1 425 68.5
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 5.3e-171 604.7 425 68.7
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 6.9e-171 604.4 425 68.2
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 1.2e-170 603.6 425 68.9
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 1.5e-170 603.2 425 68.9
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 1.5e-170 603.2 425 68.9
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 3.4e-170 602.1 425 67.8
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 5.8e-170 601.3 425 68.9
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 2.2e-169 599.4 425 68.2
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.2e-169 599.4 425 68.7
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.2e-169 599.4 425 68.7
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 2.9e-169 599.0 425 68.2
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 3.8e-169 598.6 425 68.0
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 4.9e-169 598.2 425 68.0
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 8.4e-169 597.4 425 68.7
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 1.1e-168 597.0 425 68.2
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.9e-168 596.3 425 68.5
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.9e-168 596.3 425 68.0
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 2.4e-168 595.9 425 67.3
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 3.2e-168 595.5 425 68.2
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 4.2e-168 595.1 424 68.4
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.2e-167 593.6 425 67.1
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 2.7e-167 592.4 425 67.5
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 3.5e-167 592.0 425 66.1
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 3.5e-167 592.0 425 68.2
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 6.0e-167 591.3 425 67.8
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.0e-166 590.5 425 66.6
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 3.0e-166 589.0 425 68.2
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 6.7e-166 587.8 426 68.1
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 6.7e-166 587.8 426 66.0
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 2.5e-165 585.9 425 66.6
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 2.5e-165 585.9 427 67.7
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 4.3e-165 585.1 425 66.8
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 7.4e-165 584.3 410 68.5
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 1.6e-164 583.2 425 65.2
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 1.6e-164 583.2 425 67.3
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 2.8e-164 582.4 425 67.8
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 1.8e-163 579.7 425 67.3
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 2.4e-163 579.3 425 66.4
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 5.3e-163 578.2 425 66.6
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 1.5e-162 576.6 425 66.6
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 1.5e-162 576.6 425 65.6
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 5.8e-162 574.7 420 67.1
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 5.8e-162 574.7 425 66.4
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 2.9e-161 572.4 425 64.7
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 8.4e-161 570.9 425 66.6
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 7.1e-160 567.8 413 66.8
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 7.1e-160 567.8 425 64.0
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 9.3e-160 567.4 425 64.2
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 1.6e-159 566.6 425 66.1
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 2.7e-159 565.8 425 63.1
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 2.7e-159 565.8 425 64.7
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 3.5e-159 565.5 425 63.3
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 1.3e-158 563.5 412 65.8
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 1.3e-158 563.5 425 63.5
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 6.7e-158 561.2 425 63.5
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 6.7e-158 561.2 425 65.9
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.1e-157 560.5 425 63.5
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 9.7e-157 557.4 424 63.9
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 2.2e-156 556.2 425 63.1
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 4.8e-156 555.1 425 64.0
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 2.0e-154 549.7 425 62.6
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 4.5e-154 548.5 425 63.1
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 5.9e-154 548.1 425 64.5
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 6.5e-153 544.7 425 62.4
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 1.9e-152 543.1 425 61.6
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 1.9e-152 543.1 425 61.9
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 1.2e-151 540.4 425 62.8
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 1.6e-151 540.0 425 61.9
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 7.9e-151 537.7 425 62.1
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 7.9e-151 537.7 425 60.7
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 1.9e-149 533.1 425 61.4
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 5.7e-149 531.6 426 62.9
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 5.7e-149 531.6 425 60.5
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 7.4e-149 531.2 425 63.3
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 1.7e-148 530.0 425 60.7
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 2.8e-148 529.3 425 60.7
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 3.7e-148 528.9 425 60.7
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 3.7e-148 528.9 425 60.7
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 1.8e-147 526.6 425 62.8
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.1e-144 517.3 382 65.4
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 5.5e-144 515.0 425 60.9
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 1.5e-141 506.9 425 58.6
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 2.6e-141 506.1 425 57.6
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 2.1e-135 486.5 425 56.7
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 3.3e-133 479.2 425 55.1
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 1.5e-128 463.8 357 64.7
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 2.0e-122 443.4 426 52.3
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 2.1e-119 433.3 410 52.4
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 1.2e-117 427.6 426 50.9
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 1.2e-114 417.5 251 79.3
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 3.7e-108 396.0 427 49.6
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 1.1e-107 394.4 416 46.9
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.3e-105 387.5 330 56.7
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 8.0e-103 378.3 282 62.8
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.3e-92 344.4 375 47.5
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 8.1e-87 325.1 304 54.6
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 2.3e-86 323.6 417 43.2
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 4.4e-85 319.3 253 60.1
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 4.6e-82 309.3 310 50.3
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 2.1e-71 273.9 319 44.8
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-61 241.5 271 49.8
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 4.2e-59 233.0 134 76.9
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 1.5e-45 188.0 161 59.0
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 1.5e-40 171.4 133 61.7
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.4e-33 148.3 99 69.7
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 4.1e-30 136.7 91 71.4
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 1.5e-24 118.2 71 76.1
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.5e-24 118.2 74 73.0
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 4.8e-23 113.2 71 74.6
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 7.0e-22 109.4 71 73.2
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 7.0e-22 109.4 71 73.2
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 4.2e-19 100.1 97 54.6
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 6.7e-17 92.8 79 53.2
HanXRQChr13g0397431 Helianthus annuus HOM05D003488 ORTHO05D004214 6.1e-10 69.7 361 21.9
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 8.0e-10 69.3 240 26.7
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 8.0e-10 69.3 240 26.7
Sc12g0004500 Simmondsia chinensis HOM05D003488 ORTHO05D004214 1.0e-09 68.9 423 23.6
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 1.4e-09 68.6 240 26.7
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 1.5e-08 65.1 246 26.8
CBR_g31165 Chara braunii HOM05D019043 ORTHO05D020397 2.0e-08 64.7 295 25.1
Hma1.2p1_0388F.1_g142070 Hydrangea macrophylla HOM05D001477 ORTHO05D001182 2.0e-08 64.7 225 29.8
HanXRQChr02g0054781 Helianthus annuus HOM05D003488 ORTHO05D004214 2.6e-08 64.3 361 21.1
Actinidia31274 Actinidia chinensis HOM05D003488 ORTHO05D004214 4.4e-08 63.5 240 24.6
Aa31LG2G3560 Aethionema arabicum HOM05D003488 ORTHO05D004214 4.4e-08 63.5 317 23.3
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 7.5e-08 62.8 81 44.4
Ca_19405_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 9.7e-08 62.4 314 22.9
HPP92_017621 Vanilla planifolia HOM05D000576 ORTHO05D000368 9.7e-08 62.4 251 26.3
RcHm_v2.0_Chr2g0160731 Rosa chinensis HOM05D008065 ORTHO05D010197 1.7e-07 61.6 248 22.2
Cfa016600 Carpinus fangiana HOM05D003488 ORTHO05D004214 2.8e-07 60.8 192 26.6
Manes.09G056000 Manihot esculenta HOM05D003488 ORTHO05D004214 6.3e-07 59.7 212 25.5
Lsat_1_v5_gn_5_75660 Lactuca sativa HOM05D000051 ORTHO05D000015 1.1e-06 58.9 247 24.3
Nitab4.5_0000027g0360 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.1e-06 58.9 233 24.9
SEGI_31163 Sequoiadendron giganteum HOM05D010869 ORTHO05D012699 1.1e-06 58.9 180 25.0
HanXRQChr03g0060991 Helianthus annuus HOM05D006588 ORTHO05D008272 1.8e-06 58.2 241 27.4
Lsat_1_v5_gn_7_12420 Lactuca sativa HOM05D000051 ORTHO05D000015 1.8e-06 58.2 261 26.8
SEGI_31553 Sequoiadendron giganteum HOM05D013007 ORTHO05D000221 4.1e-06 57.0 247 23.9
ECA233G3236 Erigeron canadensis HOM05D003488 ORTHO05D004214 9.1e-06 55.8 242 22.3


User provided reference genes

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