Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 3.6e-82 308.1 149 100.0
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 4.8e-79 297.7 149 96.6
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 7.0e-62 240.7 137 83.2
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 2.9e-60 235.3 135 81.5
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 2.9e-60 235.3 138 81.2
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 6.4e-55 217.6 137 71.5
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 1.4e-54 216.5 142 72.5
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 1.8e-54 216.1 139 73.4
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 1.8e-54 216.1 136 72.1
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 7.0e-54 214.2 137 70.8
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 2.0e-53 212.6 144 71.5
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 3.5e-53 211.8 138 72.5
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 3.5e-53 211.8 135 71.1
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 6.0e-53 211.1 139 70.5
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 7.8e-53 210.7 149 67.1
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 1.0e-52 210.3 131 71.8
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 1.0e-52 210.3 149 66.4
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 1.3e-52 209.9 136 69.9
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 1.3e-52 209.9 141 72.3
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 1.3e-52 209.9 139 69.8
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 2.3e-52 209.1 137 70.1
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 2.3e-52 209.1 139 69.8
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 3.9e-52 208.4 137 69.3
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 5.0e-52 208.0 137 74.5
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 5.0e-52 208.0 137 69.3
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 6.6e-52 207.6 131 73.3
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 6.6e-52 207.6 141 68.8
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 8.6e-52 207.2 134 70.1
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 8.6e-52 207.2 135 68.9
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.6e-52 207.2 135 68.9
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 8.6e-52 207.2 141 68.8
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 1.1e-51 206.8 137 69.3
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.9e-51 206.1 135 68.1
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 1.9e-51 206.1 138 69.6
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 4.3e-51 204.9 139 69.8
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 5.6e-51 204.5 136 68.4
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.3e-51 204.1 135 68.1
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 9.5e-51 203.8 148 66.2
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 9.5e-51 203.8 137 68.6
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 1.2e-50 203.4 136 67.6
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 1.2e-50 203.4 138 71.7
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 1.6e-50 203.0 156 63.5
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 1.6e-50 203.0 137 68.6
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 2.1e-50 202.6 138 66.7
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 2.1e-50 202.6 136 68.4
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 2.1e-50 202.6 136 67.6
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 2.8e-50 202.2 142 66.2
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 3.1e-49 198.7 148 64.2
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 4.0e-49 198.4 136 68.4
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.2e-48 196.8 149 62.4
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 2.0e-48 196.1 137 67.9
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 2.6e-48 195.7 136 65.4
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 2.6e-48 195.7 155 62.6
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 2.6e-48 195.7 150 62.7
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 5.8e-48 194.5 136 64.7
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 5.8e-48 194.5 136 64.7
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 7.5e-48 194.1 139 67.6
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 7.5e-48 194.1 138 64.5
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 1.3e-47 193.4 136 65.4
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 1.7e-47 193.0 145 64.8
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.2e-47 192.6 183 54.6
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 2.9e-47 192.2 135 63.0
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 4.9e-47 191.4 139 64.7
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 4.9e-47 191.4 136 65.4
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 4.9e-47 191.4 136 65.4
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 4.9e-47 191.4 136 65.4
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 8.3e-47 190.7 135 64.4
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 8.3e-47 190.7 131 69.5
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 1.1e-46 190.3 138 64.5
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.4e-46 189.9 139 65.5
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.4e-46 189.9 146 66.4
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.4e-46 189.1 140 63.6
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.4e-46 189.1 140 63.6
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 3.2e-46 188.7 138 62.3
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 3.2e-46 188.7 138 62.3
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 3.2e-46 188.7 136 64.0
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 5.4e-46 188.0 145 62.8
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 7.0e-46 187.6 136 65.4
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 7.0e-46 187.6 139 63.3
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.0e-46 187.6 139 63.3
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 9.2e-46 187.2 150 64.0
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.2e-45 186.8 140 62.9
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 1.6e-45 186.4 136 64.0
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 3.5e-45 185.3 135 60.7
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 4.6e-45 184.9 148 60.1
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.6e-45 184.9 142 64.1
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.6e-45 184.9 148 60.1
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 4.6e-45 184.9 139 65.5
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 7.8e-45 184.1 139 64.0
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 1.7e-44 183.0 139 61.9
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 1.7e-44 183.0 139 61.9
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 1.7e-44 183.0 138 63.8
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 1.7e-44 183.0 147 61.2
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 1.7e-44 183.0 141 63.8
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 2.3e-44 182.6 138 60.1
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 3.0e-44 182.2 134 64.2
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 5.0e-44 181.4 145 61.4
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 6.6e-44 181.0 135 63.0
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 1.9e-43 179.5 137 58.4
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.5e-43 179.1 135 64.4
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 3.3e-43 178.7 135 62.2
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 3.3e-43 178.7 141 61.0
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 9.5e-43 177.2 135 63.7
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.2e-42 176.8 137 63.5
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.6e-42 176.4 145 57.9
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 2.1e-42 176.0 137 63.5
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 3.6e-42 175.3 140 57.1
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 4.7e-42 174.9 150 53.3
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.7e-42 174.9 137 62.0
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 6.2e-42 174.5 129 62.8
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 8.1e-42 174.1 128 62.5
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 1.1e-41 173.7 135 57.8
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 1.1e-41 173.7 135 61.5
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 1.4e-41 173.3 137 62.0
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 1.8e-41 172.9 134 59.7
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 4.0e-41 171.8 136 58.8
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 5.2e-41 171.4 135 57.8
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.2e-40 170.2 134 56.7
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 2.0e-40 169.5 144 54.2
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 2.0e-40 169.5 144 54.2
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 2.6e-40 169.1 135 57.8
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 3.4e-40 168.7 97 73.2
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 4.4e-40 168.3 143 60.8
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 7.5e-40 167.5 145 59.3
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 9.9e-40 167.2 134 58.2
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 4.9e-39 164.9 143 60.1
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 6.4e-39 164.5 137 58.4
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.4e-38 163.3 136 58.1
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 2.4e-38 162.5 157 52.2
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 2.4e-38 162.5 136 58.1
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 2.4e-38 162.5 134 60.4
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 4.1e-38 161.8 136 55.1
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 2.7e-37 159.1 145 57.2
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 3.5e-37 158.7 136 53.7
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 7.8e-37 157.5 142 51.4
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 5.1e-36 154.8 136 52.2
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.3e-35 151.0 217 41.5
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 7.3e-35 151.0 136 54.4
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 2.1e-34 149.4 135 58.5
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 2.8e-34 149.1 115 66.1
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 2.8e-34 149.1 131 49.6
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 1.4e-33 146.7 136 49.3
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 3.4e-32 142.1 96 63.5
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 3.8e-31 138.7 134 46.3
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 6.4e-31 137.9 112 62.5
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 1.9e-30 136.3 136 49.3
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 3.2e-30 135.6 129 48.8
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.2e-29 133.7 138 52.2
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 6.0e-29 131.3 135 43.7
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 5.1e-28 128.3 143 44.1
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 4.3e-27 125.2 149 47.7
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 1.2e-24 117.1 135 43.7
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 4.4e-24 115.2 125 49.6
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 3.5e-21 105.5 113 45.1
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 8.7e-20 100.9 72 55.6
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 2.1e-18 96.3 130 43.1
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 6.2e-18 94.7 95 52.6
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 8.1e-18 94.4 134 36.6
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 9.0e-17 90.9 50 66.0
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 1.5e-16 90.1 53 64.2
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 5.8e-16 88.2 102 44.1
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 9.9e-16 87.4 105 45.7
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 8.4e-15 84.3 90 48.9
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 1.3e-12 77.0 63 66.7
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.7e-12 74.3 69 60.9
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 2.8e-10 69.3 55 67.3
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 4.8e-10 68.6 74 48.6
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 1.4e-09 67.0 34 70.6
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 4.0e-09 65.5 72 51.4
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 4.2e-06 55.5 47 61.7


User provided reference genes

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