Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 1.4e-151 539.7 285 100.0
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 2.6e-105 386.0 275 73.8
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 2.8e-91 339.3 369 56.1
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 1.0e-85 320.9 351 53.0
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 9.2e-79 297.7 339 52.8
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.6e-78 295.4 200 68.0
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 7.8e-78 294.7 263 57.4
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 3.0e-77 292.7 230 61.7
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.0e-77 292.7 200 67.0
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 3.6e-75 285.8 264 56.1
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 4.7e-75 285.4 195 67.7
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 6.2e-75 285.0 195 69.2
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.1e-74 284.3 206 65.0
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 1.1e-74 284.3 267 55.1
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.4e-74 283.9 271 52.4
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.8e-74 283.5 268 55.2
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 2.4e-74 283.1 265 55.8
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 3.1e-74 282.7 325 48.0
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 3.1e-74 282.7 325 48.0
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 4.0e-74 282.3 265 53.6
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 1.2e-73 280.8 264 53.4
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.5e-73 280.4 265 53.2
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 2.0e-73 280.0 265 53.6
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 3.4e-73 279.3 265 54.7
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 3.4e-73 279.3 278 52.5
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 3.4e-73 279.3 264 53.0
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 4.4e-73 278.9 219 61.2
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 7.6e-73 278.1 269 52.8
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 7.6e-73 278.1 268 53.0
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 9.9e-73 277.7 267 52.8
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 2.9e-72 276.2 250 54.8
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.8e-72 275.8 265 54.0
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 8.4e-72 274.6 243 56.0
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 8.4e-72 274.6 271 51.7
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 8.4e-72 274.6 265 52.5
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 1.4e-71 273.9 265 52.1
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.4e-71 273.9 256 52.7
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 2.4e-71 273.1 267 52.1
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 2.4e-71 273.1 333 46.2
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 2.4e-71 273.1 267 52.1
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 3.2e-71 272.7 270 51.5
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 3.2e-71 272.7 258 52.7
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 1.2e-70 270.8 264 53.4
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 1.2e-70 270.8 269 51.7
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.2e-70 270.8 274 50.4
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.6e-70 270.4 273 52.0
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.1e-70 270.0 267 52.1
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.1e-70 270.0 264 51.1
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 2.7e-70 269.6 285 49.1
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 2.7e-70 269.6 267 51.7
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 3.5e-70 269.2 266 52.3
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 4.6e-70 268.9 267 51.3
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 6.0e-70 268.5 263 52.1
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 6.0e-70 268.5 263 52.5
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 7.8e-70 268.1 266 51.5
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 7.8e-70 268.1 263 52.1
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 1.0e-69 267.7 248 53.6
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.3e-69 267.3 265 52.1
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.3e-69 267.3 363 44.6
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 2.3e-69 266.5 269 52.0
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 3.0e-69 266.2 273 50.2
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.0e-69 266.2 348 45.7
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 3.0e-69 266.2 264 50.0
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 3.0e-69 266.2 267 50.2
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 5.1e-69 265.4 267 50.9
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 6.6e-69 265.0 263 51.3
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 1.5e-68 263.8 352 44.3
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.5e-68 263.8 313 45.7
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 1.9e-68 263.5 272 49.6
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 1.9e-68 263.5 230 57.8
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 4.3e-68 262.3 307 45.3
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 5.6e-68 261.9 272 50.7
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 7.3e-68 261.5 285 49.5
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 7.3e-68 261.5 242 53.3
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 7.3e-68 261.5 227 56.4
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 9.6e-68 261.2 265 50.6
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 1.3e-67 260.8 257 51.0
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 1.3e-67 260.8 280 48.9
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.6e-67 260.4 267 50.6
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 1.6e-67 260.4 275 48.7
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 2.1e-67 260.0 264 50.8
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.1e-67 260.0 264 50.0
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 2.8e-67 259.6 270 48.5
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 4.8e-67 258.8 285 48.8
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 4.8e-67 258.8 263 50.2
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 6.2e-67 258.5 285 47.4
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.1e-66 257.7 278 50.0
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 1.1e-66 257.7 254 51.6
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 1.1e-66 257.7 343 44.9
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.4e-66 257.3 271 48.0
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.4e-66 257.3 269 49.8
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 2.4e-66 256.5 285 47.4
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 2.4e-66 256.5 352 43.5
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 4.0e-66 255.8 272 48.9
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 5.3e-66 255.4 285 47.7
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 9.0e-66 254.6 290 47.2
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 1.2e-65 254.2 270 48.9
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 1.2e-65 254.2 270 49.3
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 1.2e-65 254.2 278 48.6
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 1.5e-65 253.8 267 50.6
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 1.5e-65 253.8 263 51.0
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 2.0e-65 253.4 277 47.7
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.0e-65 253.4 267 49.8
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 2.0e-65 253.4 264 50.0
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 2.6e-65 253.1 305 44.3
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 2.6e-65 253.1 304 46.4
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 3.4e-65 252.7 272 48.2
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.5e-65 252.3 297 45.8
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 4.5e-65 252.3 297 45.8
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 7.6e-65 251.5 262 48.9
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 2.2e-64 250.0 306 44.4
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 2.9e-64 249.6 303 45.2
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 2.9e-64 249.6 265 48.7
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 3.8e-64 249.2 255 52.2
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 3.8e-64 249.2 257 49.8
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 4.9e-64 248.8 285 47.0
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 4.9e-64 248.8 256 48.8
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 1.1e-63 247.7 269 47.2
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.4e-63 247.3 260 49.2
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 5.4e-63 245.4 285 46.0
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 9.3e-63 244.6 255 51.0
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 9.3e-63 244.6 281 46.3
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 9.3e-63 244.6 264 48.9
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 4.6e-62 242.3 262 48.5
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 1.8e-61 240.4 273 46.2
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 6.2e-59 231.9 165 64.8
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 1.2e-57 227.6 261 47.5
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 6.4e-56 221.9 231 49.8
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 7.9e-54 214.9 263 41.1
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 1.0e-53 214.5 226 50.0
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 3.3e-52 209.5 265 39.6
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 2.1e-51 206.8 228 47.4
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 2.1e-51 206.8 262 43.5
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 4.0e-50 202.6 264 40.2
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 6.5e-48 195.3 232 46.1
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 2.4e-42 176.8 262 37.0
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.5e-41 174.1 201 50.7
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.3e-40 171.0 140 58.6
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 5.0e-40 169.1 262 37.8
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 6.5e-40 168.7 120 61.7
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.1e-39 167.9 120 62.5
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 3.2e-39 166.4 120 60.8
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 3.2e-39 166.4 120 62.5
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 2.1e-38 163.7 154 53.9
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 2.7e-38 163.3 120 60.8
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 1.0e-37 161.4 117 63.2
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 2.3e-37 160.2 163 49.7
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 6.7e-37 158.7 118 61.9
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.5e-36 156.8 180 46.7
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.5e-36 156.8 180 46.7
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 4.3e-36 156.0 120 60.8
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 3.7e-35 152.9 184 45.1
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 6.9e-34 148.7 116 59.5
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 1.1e-31 141.4 82 78.0
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 2.7e-30 136.7 158 45.6
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.7e-30 136.0 85 75.3
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 1.0e-29 134.8 87 67.8
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 3.9e-29 132.9 85 69.4
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 1.3e-27 127.9 85 69.4
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.1e-26 122.9 83 66.3
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.1e-26 122.9 83 66.3
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 5.9e-25 119.0 259 27.8
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 1.0e-24 118.2 270 29.3
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 8.0e-22 108.6 71 69.0
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.8e-21 107.5 90 54.4
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 6.7e-21 105.5 95 47.4
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 5.7e-20 102.4 79 57.0
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 7.4e-20 102.1 79 58.2
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 2.2e-19 100.5 74 60.8
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 3.7e-19 99.8 345 24.3
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.3e-18 95.9 64 65.6
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 6.5e-16 89.0 60 68.3
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 1.5e-15 87.8 96 50.0
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.5e-15 87.0 60 63.3
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 2.3e-13 80.5 51 74.5
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.2e-13 79.3 50 70.0
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 2.7e-09 67.0 55 56.4
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 2.2e-08 63.9 53 56.6
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 2.1e-06 57.4 57 45.6


User provided reference genes

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