Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 5.9e-252 873.6 413 100.0
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 3.7e-230 801.2 404 90.8
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 1.1e-229 799.7 396 94.2
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 1.1e-229 799.7 402 92.3
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 5.6e-226 787.3 435 86.0
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 1.1e-221 773.1 400 90.0
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 8.6e-219 763.5 417 85.9
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 9.5e-218 760.0 401 87.5
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 1.2e-217 759.6 403 86.4
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 1.6e-217 759.2 402 88.3
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 3.6e-217 758.1 401 88.0
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 2.0e-215 752.3 402 88.1
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 3.4e-215 751.5 401 87.8
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 5.8e-215 750.7 402 87.3
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 5.8e-215 750.7 400 86.8
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 9.9e-215 750.0 401 86.8
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.7e-214 749.2 401 86.5
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 1.7e-214 749.2 401 86.5
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 2.9e-214 748.4 403 87.3
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 2.9e-214 748.4 401 86.8
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 3.7e-214 748.0 402 86.6
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 3.7e-214 748.0 401 86.3
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 3.7e-214 748.0 403 86.6
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 4.9e-214 747.7 403 86.6
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 6.4e-214 747.3 402 86.3
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 6.4e-214 747.3 401 85.3
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 6.4e-214 747.3 403 86.6
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 6.4e-214 747.3 400 86.2
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 6.4e-214 747.3 400 86.2
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 1.1e-213 746.5 408 85.0
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 1.1e-213 746.5 413 85.2
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 4.1e-213 744.6 413 86.0
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 9.2e-213 743.4 401 85.5
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 1.6e-212 742.7 404 86.4
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 4.6e-212 741.1 401 85.5
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 6.0e-212 740.7 409 85.6
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 1.0e-211 740.0 403 85.9
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 1.0e-211 740.0 403 85.6
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 1.3e-211 739.6 403 84.4
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 1.3e-211 739.6 394 87.6
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 2.3e-211 738.8 403 85.9
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 2.3e-211 738.8 403 85.9
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 3.0e-211 738.4 401 85.3
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 3.9e-211 738.0 403 86.4
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 5.1e-211 737.6 390 87.9
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 6.6e-211 737.3 398 84.9
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 8.6e-211 736.9 403 85.1
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 8.6e-211 736.9 401 85.3
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 1.5e-210 736.1 408 85.3
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 2.5e-210 735.3 401 85.3
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 2.5e-210 735.3 413 84.3
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 2.5e-210 735.3 400 85.0
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 2.5e-210 735.3 388 88.1
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 2.8e-209 731.9 404 85.4
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 3.6e-209 731.5 402 85.1
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 4.7e-209 731.1 401 84.0
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 4.7e-209 731.1 401 84.0
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 3.1e-208 728.4 401 85.5
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 1.2e-207 726.5 402 83.8
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 2.0e-207 725.7 403 84.1
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 2.0e-207 725.7 391 86.4
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 2.0e-207 725.7 390 85.6
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 2.6e-207 725.3 395 84.8
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 4.4e-207 724.5 432 80.6
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 9.9e-207 723.4 390 86.4
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 2.2e-206 722.2 401 83.5
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 4.9e-206 721.1 403 83.4
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 1.9e-205 719.2 391 85.4
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 1.9e-205 719.2 413 82.3
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 2.4e-205 718.8 401 83.5
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 3.5e-204 714.9 402 82.6
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 3.5e-204 714.9 399 84.2
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 4.6e-204 714.5 398 84.9
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 2.3e-203 712.2 401 81.3
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 3.9e-203 711.4 401 82.0
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 6.6e-203 710.7 401 81.5
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 1.9e-202 709.1 401 81.5
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 3.6e-201 704.9 400 82.8
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.8e-200 702.6 401 81.8
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 3.1e-200 701.8 402 82.1
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 4.0e-200 701.4 401 81.0
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 6.9e-200 700.7 414 80.2
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 9.0e-200 700.3 404 81.4
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 3.5e-196 688.3 395 80.8
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 8.7e-195 683.7 385 81.3
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 8.7e-195 683.7 385 81.3
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 5.6e-194 681.0 401 78.1
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 1.3e-193 679.9 387 81.1
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 1.6e-193 679.5 418 78.2
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 5.3e-192 674.5 377 83.8
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 7.6e-191 670.6 385 81.0
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 9.9e-191 670.2 402 78.1
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 5.4e-189 664.5 408 76.7
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 2.1e-188 662.5 357 84.9
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.8e-187 659.4 378 81.2
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 3.9e-187 658.3 399 78.2
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 5.1e-187 657.9 401 78.3
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 3.3e-186 655.2 387 78.8
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 5.3e-184 647.9 387 77.8
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 1.2e-183 646.7 387 77.5
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 2.6e-183 645.6 411 76.6
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 7.6e-183 644.0 386 77.2
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 6.5e-182 641.0 408 77.2
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 1.4e-181 639.8 376 79.0
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 9.3e-181 637.1 401 77.1
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 5.1e-179 631.3 341 84.5
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 1.1e-178 630.2 401 76.3
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 1.0e-171 607.1 357 79.3
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 2.3e-171 605.9 393 71.2
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 3.9e-171 605.1 325 85.2
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 8.2e-169 597.4 398 70.9
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 1.5e-167 593.2 394 70.1
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 1.0e-166 590.5 394 68.8
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 6.3e-161 571.2 305 86.6
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 2.2e-158 562.8 306 85.0
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 2.3e-155 552.7 345 74.5
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 2.0e-154 549.7 306 84.3
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 2.2e-153 546.2 401 65.3
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 4.2e-149 531.9 393 63.9
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 2.6e-122 443.0 242 85.5
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 4.0e-107 392.5 208 89.4
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 2.6e-106 389.8 266 67.7
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 3.0e-94 349.7 202 79.2
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.6e-87 327.4 226 72.6
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 6.6e-86 322.0 171 83.0
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 8.7e-86 321.6 371 51.2
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 1.4e-80 304.3 161 85.7
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 2.7e-79 300.1 434 40.1
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 4.6e-79 299.3 224 62.5
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 3.5e-71 273.1 146 82.2
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 1.3e-60 238.0 172 64.0
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 1.5e-58 231.1 145 76.6
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 1.5e-45 188.0 189 54.0
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 2.1e-31 141.0 72 88.9
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 1.4e-22 111.7 201 39.3
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 1.4e-14 85.1 271 26.9
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 1.6e-07 61.6 34 82.4


User provided reference genes

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