Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007448 Chenopodium quinoa HOM05D005819 ORTHO05D006780 3.5e-109 398.3 199 100.0
AUR62040308 Chenopodium quinoa HOM05D005819 ORTHO05D006780 2.6e-80 302.4 165 92.7
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 3.8e-79 298.5 198 77.3
EL10Ac5g12980 Beta vulgaris HOM05D005819 ORTHO05D006780 3.8e-79 298.5 193 79.3
EL10Ac2g02755 Beta vulgaris HOM05D005819 ORTHO05D006780 1.4e-78 296.6 198 78.3
CiPaw.03G166600 Carya illinoinensis HOM05D005819 ORTHO05D006780 3.4e-56 222.2 186 65.6
Gohir.A03G161900 Gossypium hirsutum HOM05D005819 ORTHO05D006780 3.4e-56 222.2 181 65.2
CANSAT21G1768 Cannabis sativa HOM05D005819 ORTHO05D006780 5.9e-56 221.5 158 69.6
Haze_13026 Corylus avellana HOM05D005819 ORTHO05D006780 5.9e-56 221.5 138 76.1
Gohir.D02G185101 Gossypium hirsutum HOM05D005819 ORTHO05D006780 5.9e-56 221.5 181 65.2
Cc05_g05680 Coffea canephora HOM05D005819 ORTHO05D006780 1.0e-55 220.7 202 58.9
Sed0001645 Sechium edule HOM05D005819 ORTHO05D006780 1.3e-55 220.3 214 57.0
Sc12g0002590 Simmondsia chinensis HOM05D005819 ORTHO05D006780 1.3e-55 220.3 200 57.0
Atru.chr6.3097 Acer truncatum HOM05D005819 ORTHO05D006780 1.7e-55 219.9 152 69.1
Gorai.005G207400 Gossypium raimondii HOM05D005819 ORTHO05D006780 2.2e-55 219.5 181 64.6
CSS0044572 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 3.8e-55 218.8 185 60.5
PGSC0003DMG400026152 Solanum tuberosum HOM05D005819 ORTHO05D006780 5.0e-55 218.4 178 62.9
Aqoxy7G03432 Aquilegia oxysepala HOM05D005819 ORTHO05D006780 8.5e-55 217.6 199 60.3
PGR142G2655 Punica granatum HOM05D005819 ORTHO05D006780 1.4e-54 216.9 139 72.7
Glyma.19G118800 Glycine max HOM05D005819 ORTHO05D006780 1.9e-54 216.5 198 59.1
Hma1.2p1_1090F.1_g255750 Hydrangea macrophylla HOM05D005819 ORTHO05D006780 1.9e-54 216.5 195 59.0
Prupe.3G227000 Prunus persica HOM05D005819 ORTHO05D006780 2.5e-54 216.1 189 59.8
FvH4_6g44280 Fragaria vesca HOM05D005819 ORTHO05D006780 4.2e-54 215.3 190 58.9
FAN14G4258 Fragaria x ananassa HOM05D005819 ORTHO05D006780 4.2e-54 215.3 190 58.9
QL08p035991 Quercus lobata HOM05D005819 ORTHO05D006780 4.2e-54 215.3 164 65.9
Duzib248G0701 Durio zibethinus HOM05D005819 ORTHO05D006780 5.5e-54 214.9 192 61.5
FAN09G3032 Fragaria x ananassa HOM05D005819 ORTHO05D006780 5.5e-54 214.9 188 60.6
Hund06769 Selenicereus undatus HOM05D005819 ORTHO05D006780 5.5e-54 214.9 140 71.4
Solyc07g053150.3 Solanum lycopersicum HOM05D005819 ORTHO05D006780 5.5e-54 214.9 178 62.4
Sopen07g026700 Solanum pennellii HOM05D005819 ORTHO05D006780 1.2e-53 213.8 178 62.4
Lalb_Chr22g0358491 Lupinus albus HOM05D005819 ORTHO05D006780 1.6e-53 213.4 131 74.8
Nitab4.5_0004360g0020 Nicotiana tabacum HOM05D005819 ORTHO05D006780 2.1e-53 213.0 189 59.8
GSVIVG01000441001 Vitis vinifera HOM05D005819 ORTHO05D006780 2.1e-53 213.0 179 60.9
arahy.Tifrunner.gnm1.ann1.7T7QMX Arachis hypogaea HOM05D005819 ORTHO05D006780 2.7e-53 212.6 162 64.8
FAN05G1257 Fragaria x ananassa HOM05D005819 ORTHO05D006780 2.7e-53 212.6 190 58.4
Nitab4.5_0006653g0030 Nicotiana tabacum HOM05D005819 ORTHO05D006780 3.6e-53 212.2 181 61.9
Ciclev10016814m.g Citrus clementina HOM05D005819 ORTHO05D006780 4.7e-53 211.8 151 68.2
Medtr6g071520 Medicago truncatula HOM05D005819 ORTHO05D006780 6.1e-53 211.5 164 65.2
CAN.G640.15 Capsicum annuum HOM05D005819 ORTHO05D006780 7.9e-53 211.1 178 60.1
ClCG02G011330 Citrullus lanatus HOM05D005819 ORTHO05D006780 1.0e-52 210.7 183 60.7
MELO3C013522.2 Cucumis melo HOM05D005819 ORTHO05D006780 1.4e-52 210.3 179 62.0
MD17G1087700 Malus domestica HOM05D005819 ORTHO05D006780 1.4e-52 210.3 139 74.1
TPR.G7847 Trifolium pratense HOM05D005819 ORTHO05D006780 1.4e-52 210.3 183 56.8
VMungo0647G1299 Vigna mungo HOM05D005819 ORTHO05D006780 1.4e-52 210.3 184 59.8
Thecc.02G167000 Theobroma cacao HOM05D005819 ORTHO05D006780 1.8e-52 209.9 185 63.2
MSTRG.14168 Avicennia marina HOM05D005819 ORTHO05D006780 2.3e-52 209.5 190 56.8
Ca_03448_v3 Cicer arietinum L. HOM05D005819 ORTHO05D006780 2.3e-52 209.5 171 60.2
Potri.013G150400 Populus trichocarpa HOM05D005819 ORTHO05D006780 2.3e-52 209.5 195 58.5
Glyma.03G007300 Glycine max HOM05D005819 ORTHO05D006780 3.0e-52 209.1 198 56.6
Lsat_1_v5_gn_3_41801 Lactuca sativa HOM05D005819 ORTHO05D006780 3.0e-52 209.1 191 58.1
RcHm_v2.0_Chr2g0161141 Rosa chinensis HOM05D005819 ORTHO05D006780 3.9e-52 208.8 137 72.3
PSO170G6190 Papaver somniferum HOM05D005819 ORTHO05D006780 5.2e-52 208.4 152 66.4
PSO210G2402 Papaver somniferum HOM05D005819 ORTHO05D006780 5.2e-52 208.4 162 64.2
Lj1g0005576 Lotus japonicus HOM05D005819 ORTHO05D006780 6.7e-52 208.0 143 65.7
Medtr7g087030 Medicago truncatula HOM05D005819 ORTHO05D006780 8.8e-52 207.6 164 64.0
CsaV3_6G012280 Cucumis sativus L. HOM05D005819 ORTHO05D006780 1.1e-51 207.2 181 60.2
Eucgr.K00886 Eucalyptus grandis HOM05D005819 ORTHO05D006780 1.1e-51 207.2 137 69.3
Manes.18G113901 Manihot esculenta HOM05D005819 ORTHO05D006780 1.1e-51 207.2 195 58.5
Sabra13G0120900 Salix brachista HOM05D005819 ORTHO05D006780 1.5e-51 206.8 194 58.2
CARHR251690 Cardamine hirsuta HOM05D005819 ORTHO05D006780 2.0e-51 206.5 125 76.0
SalBow1G3361 Salvia bowleyana HOM05D005819 ORTHO05D006780 2.0e-51 206.5 202 55.0
SalBow1G8148 Salvia bowleyana HOM05D005819 ORTHO05D006780 2.0e-51 206.5 202 55.0
BolC3t16000H Brassica oleracea HOM05D005819 ORTHO05D006780 3.3e-51 205.7 150 64.7
ECA246G1767 Erigeron canadensis HOM05D005819 ORTHO05D006780 3.3e-51 205.7 151 63.6
HanXRQChr17g0543121 Helianthus annuus HOM05D005819 ORTHO05D006780 4.4e-51 205.3 136 70.6
SGA_v2.0_scaffold159G37608 Striga asiatica HOM05D005819 ORTHO05D006780 4.4e-51 205.3 197 56.3
Nn2g10488 Nelumbo nucifera HOM05D005819 ORTHO05D006780 5.7e-51 204.9 128 71.9
Phvul.001G107000 Phaseolus vulgaris HOM05D005819 ORTHO05D006780 7.4e-51 204.5 165 63.6
BraA03t12233Z Brassica rapa HOM05D005819 ORTHO05D006780 9.7e-51 204.1 183 56.3
Thhalv10028999m.g Eutrema salsugineum HOM05D005819 ORTHO05D006780 9.7e-51 204.1 125 74.4
SGA_v2.0_scaffold49G18319 Striga asiatica HOM05D005819 ORTHO05D006780 9.7e-51 204.1 153 66.0
BcaB01g02514 Brassica carinata HOM05D005819 ORTHO05D006780 2.2e-50 203.0 165 60.0
SHI10263 Sapria himalayana HOM05D005819 ORTHO05D006780 2.2e-50 203.0 136 68.4
A09p02550 Brassica napus HOM05D005819 ORTHO05D006780 2.8e-50 202.6 125 73.6
THA.LOC104806805 Tarenaya hassleriana HOM05D005819 ORTHO05D006780 2.8e-50 202.6 125 73.6
BcaC01g06695 Brassica carinata HOM05D005819 ORTHO05D006780 3.7e-50 202.2 150 64.0
C03p36930 Brassica napus HOM05D005819 ORTHO05D006780 3.7e-50 202.2 150 64.0
BraA09t35901Z Brassica rapa HOM05D005819 ORTHO05D006780 3.7e-50 202.2 125 73.6
Migut.F00120 Erythranthe guttata HOM05D005819 ORTHO05D006780 3.7e-50 202.2 187 57.2
BcaC04g23988 Brassica carinata HOM05D005819 ORTHO05D006780 4.8e-50 201.8 177 61.6
A03p30520 Brassica napus HOM05D005819 ORTHO05D006780 8.2e-50 201.1 150 63.3
TAR626G0084 Trochodendron aralioides HOM05D005819 ORTHO05D006780 1.4e-49 200.3 142 69.7
VMungo1383G0784 Vigna mungo HOM05D005819 ORTHO05D006780 1.8e-49 199.9 198 57.1
FAN02G1820 Fragaria x ananassa HOM05D005819 ORTHO05D006780 2.4e-49 199.5 209 53.6
AL6G49690 Arabidopsis lyrata HOM05D005819 ORTHO05D006780 3.1e-49 199.1 184 56.5
SalBow6G6406 Salvia bowleyana HOM05D005819 ORTHO05D006780 4.1e-49 198.7 202 54.5
Sp6g03280 Schrenkiella parvula HOM05D005819 ORTHO05D006780 4.1e-49 198.7 180 57.2
AT4G03240 Arabidopsis thaliana HOM05D005819 ORTHO05D006780 1.6e-48 196.8 193 54.9
Zm00001eb151360 Zea mays HOM05D005819 ORTHO05D006780 5.9e-48 194.9 171 56.7
Rhsim04G0058700 Rhododendron simsii HOM05D005819 ORTHO05D006780 7.7e-48 194.5 176 58.0
TWI18G0421 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 7.7e-48 194.5 152 67.1
Carub.0006s3382 Capsella rubella HOM05D005819 ORTHO05D006780 1.0e-47 194.1 182 56.6
Peaxi162Scf00007g01734 Petunia axillaris HOM05D005819 ORTHO05D006780 2.2e-47 193.0 111 78.4
CSS0036944 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 2.9e-47 192.6 111 79.3
CiPaw.04G121300 Carya illinoinensis HOM05D005819 ORTHO05D006780 2.9e-47 192.6 161 63.4
Aa31LG5G2740 Aethionema arabicum HOM05D005819 ORTHO05D006780 1.5e-46 190.3 147 61.9
Oeu037169.1 Olea europaea HOM05D005819 ORTHO05D006780 3.6e-45 185.7 116 71.6
Os01g0783600 Oryza sativa ssp. japonica HOM05D005819 ORTHO05D006780 4.7e-45 185.3 182 53.8
arahy.Tifrunner.gnm1.ann1.Q06U4P Arachis hypogaea HOM05D005819 ORTHO05D006780 1.0e-44 184.1 241 46.5
Oeu005644.2 Olea europaea HOM05D005819 ORTHO05D006780 1.4e-44 183.7 116 72.4
DCAR_009705 Daucus carota HOM05D005819 ORTHO05D006780 1.8e-44 183.3 210 51.0
unitig_749.g13948 Utricularia gibba HOM05D005819 ORTHO05D006780 1.5e-43 180.3 136 60.3
SEGI_37806 Sequoiadendron giganteum HOM05D005819 ORTHO05D006780 2.0e-43 179.9 144 59.7
Zm00001eb034710 Zea mays HOM05D005819 ORTHO05D006780 2.8e-42 176.0 185 49.2
CDE02G1488 Ceratophyllum demersum HOM05D005819 ORTHO05D006780 3.7e-42 175.6 159 56.0
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 2.4e-41 172.9 112 68.8
Mapoly0009s0241 Marchantia polymorpha HOM05D005819 ORTHO05D006780 3.2e-38 162.5 137 57.7
Medtr6g071700 Medicago truncatula HOM05D005819 ORTHO05D006780 9.4e-38 161.0 115 66.1
DCAR_021205 Daucus carota HOM05D005819 ORTHO05D006780 1.2e-37 160.6 91 78.0
MD09G1099400 Malus domestica HOM05D005819 ORTHO05D006780 4.0e-36 155.6 122 65.6
Pp3c9_21390 Physcomitrium patens HOM05D005819 ORTHO05D006780 7.5e-35 151.4 133 52.6
RhsimUnG0197800 Rhododendron simsii HOM05D005819 ORTHO05D006780 8.3e-34 147.9 147 55.8
Dinv13856 Davidia involucrata HOM05D005819 ORTHO05D006780 1.4e-33 147.1 150 58.0
vmacro15799 Vaccinium macrocarpon HOM05D005819 ORTHO05D006780 1.4e-33 147.1 116 65.5
SMO140G0069 Selaginella moellendorffii HOM05D005819 ORTHO05D006780 1.8e-33 146.7 109 60.6
Psat3g085640 Pisum sativum HOM05D005819 ORTHO05D006780 7.0e-33 144.8 134 55.2
Sed0008711 Sechium edule HOM05D005819 ORTHO05D006780 4.5e-32 142.1 90 68.9
BcaB01g01964 Brassica carinata HOM05D005819 ORTHO05D006780 1.0e-31 141.0 93 67.7
Dinv02570 Davidia involucrata HOM05D005819 ORTHO05D006780 1.1e-30 137.5 90 73.3
TWI36G1190 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 1.9e-30 136.7 110 67.3
AagrBONN_evm.TU.Sc2ySwM_117.2177 Anthoceros agrestis HOM05D005819 ORTHO05D006780 1.4e-28 130.6 109 56.0
CBR_g3856 Chara braunii HOM05D005819 ORTHO05D006780 5.2e-28 128.6 113 52.2
Oeu025479.1 Olea europaea HOM05D005819 ORTHO05D006780 1.5e-27 127.1 73 78.1
Cre12.g538350 Chlamydomonas reinhardtii HOM05D005819 ORTHO05D006780 1.8e-25 120.2 116 52.6
HanXRQChr04g0112441 Helianthus annuus HOM05D005819 ORTHO05D006780 5.9e-24 115.2 124 49.2
PRCOL_00006727 Prasinoderma coloniale HOM05D005819 ORTHO05D006780 5.6e-22 108.6 97 51.5
MCO13G341 Micromonas commoda HOM05D005819 ORTHO05D006780 2.0e-19 100.1 111 44.1
HPP92_008010 Vanilla planifolia HOM05D005819 ORTHO05D006780 9.2e-17 91.3 103 48.5
COL.COLO4_13056 Corchorus olitorius HOM05D005819 ORTHO05D006780 4.6e-16 89.0 93 58.1
AUR62020537 Chenopodium quinoa HOM05D001264 ORTHO05D001167 2.3e-15 86.7 61 78.7
Cfa024975 Carpinus fangiana HOM05D005819 ORTHO05D006780 3.6e-13 79.3 112 36.6
Haze_01489 Corylus avellana HOM05D005819 ORTHO05D006780 2.3e-12 76.6 193 32.1
ATR1132G123 Amborella trichopoda HOM05D005819 ORTHO05D006780 5.2e-12 75.5 138 41.3
Actinidia30496 Actinidia chinensis HOM05D005819 ORTHO05D006780 1.9e-09 67.0 42 71.4
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 8.6e-07 58.2 121 30.6
Lsat_1_v5_gn_8_145740 Lactuca sativa HOM05D005244 ORTHO05D006780 3.3e-06 56.2 67 50.7


User provided reference genes

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