Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007416 Chenopodium quinoa HOM05D004130 ORTHO05D004705 1.1e-43 179.5 86 100.0
AUR62027316 Chenopodium quinoa HOM05D004130 ORTHO05D004705 1.6e-42 175.6 86 97.7
Ah.12g056050 Amaranthus hybridus HOM05D004130 ORTHO05D004705 1.2e-37 159.5 86 87.2
Hund11098 Selenicereus undatus HOM05D004130 ORTHO05D004705 1.4e-35 152.5 86 80.2
EL10Ac5g11913 Beta vulgaris HOM05D004130 ORTHO05D004705 2.7e-34 148.3 82 82.9
Sc01g0007080 Simmondsia chinensis HOM05D004130 ORTHO05D004705 1.7e-31 139.0 87 75.9
unitig_32.g11633 Utricularia gibba HOM05D004130 ORTHO05D004705 3.7e-31 137.9 86 69.8
Glyma.04G122900 Glycine max HOM05D004130 ORTHO05D004705 2.4e-30 135.2 87 74.7
PSO063G4979 Papaver somniferum HOM05D004130 ORTHO05D004705 3.1e-30 134.8 86 70.9
PSO782G2341 Papaver somniferum HOM05D004130 ORTHO05D004705 3.1e-30 134.8 86 70.9
Glyma.09G214500 Glycine max HOM05D004130 ORTHO05D004705 9.1e-30 133.3 87 74.7
Phvul.002G127700 Phaseolus vulgaris HOM05D004130 ORTHO05D004705 1.2e-29 132.9 87 74.7
arahy.Tifrunner.gnm1.ann1.DIJ3RT Arachis hypogaea HOM05D004130 ORTHO05D004705 3.5e-29 131.3 87 73.6
arahy.Tifrunner.gnm1.ann1.X5SRIL Arachis hypogaea HOM05D004130 ORTHO05D004705 3.5e-29 131.3 87 73.6
Eucgr.E01218 Eucalyptus grandis HOM05D004130 ORTHO05D004705 5.9e-29 130.6 87 74.7
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 5.0e-28 127.5 84 72.6
Lalb_Chr05g0215391 Lupinus albus HOM05D004130 ORTHO05D004705 6.5e-28 127.1 87 71.3
Aqoxy4G02079 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 8.5e-28 126.7 87 72.4
Lj2g0015830 Lotus japonicus HOM05D004130 ORTHO05D004705 8.5e-28 126.7 87 70.1
Peaxi162Scf00193g00214 Petunia axillaris HOM05D004130 ORTHO05D004705 8.5e-28 126.7 87 72.4
Aqoxy7G01323 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 1.1e-27 126.3 87 72.4
Sabra01G0100700 Salix brachista HOM05D004130 ORTHO05D004705 1.1e-27 126.3 87 71.3
Lsat_1_v5_gn_3_23340 Lactuca sativa HOM05D004130 ORTHO05D004705 1.9e-27 125.6 82 74.4
Os03g0576600 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 1.9e-27 125.6 82 74.4
PGR031G3679 Punica granatum HOM05D004130 ORTHO05D004705 2.5e-27 125.2 87 70.1
PGR067G0004 Punica granatum HOM05D004130 ORTHO05D004705 2.5e-27 125.2 87 70.1
ATR0829G178 Amborella trichopoda HOM05D004130 ORTHO05D004705 4.2e-27 124.4 87 70.1
CSS0014160 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 4.2e-27 124.4 87 71.3
DCAR_030897 Daucus carota HOM05D004130 ORTHO05D004705 4.2e-27 124.4 82 73.2
Os08g0162800 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 5.5e-27 124.0 86 69.8
CSS0012724 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 7.2e-27 123.6 87 70.1
CSS0035325 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 7.2e-27 123.6 87 70.1
RcHm_v2.0_Chr7g0213621 Rosa chinensis HOM05D004130 ORTHO05D004705 7.2e-27 123.6 84 70.2
Solyc08g075690.3 Solanum lycopersicum HOM05D004130 ORTHO05D004705 7.2e-27 123.6 87 70.1
Zm00001eb415460 Zea mays HOM05D004130 ORTHO05D004705 7.2e-27 123.6 82 73.2
CsaV3_3G001010 Cucumis sativus L. HOM05D004130 ORTHO05D004705 9.4e-27 123.2 82 74.4
Ciclev10002973m.g Citrus clementina HOM05D004130 ORTHO05D004705 1.2e-26 122.9 87 69.0
Gohir.A11G304400 Gossypium hirsutum HOM05D004130 ORTHO05D004705 1.2e-26 122.9 83 69.9
Lalb_Chr16g0380701 Lupinus albus HOM05D004130 ORTHO05D004705 1.2e-26 122.9 84 69.0
Psat0s1441g0080 Pisum sativum HOM05D000032 ORTHO05D004705 1.2e-26 122.9 87 71.3
Psat2g143680 Pisum sativum HOM05D004130 ORTHO05D004705 1.2e-26 122.9 87 71.3
CAN.G800.12 Capsicum annuum HOM05D004130 ORTHO05D004705 1.6e-26 122.5 82 72.0
ClCG10G000940 Citrullus lanatus HOM05D004130 ORTHO05D004705 1.6e-26 122.5 82 73.2
Prupe.5G019500 Prunus persica HOM05D004130 ORTHO05D004705 1.6e-26 122.5 83 69.9
DCAR_006311 Daucus carota HOM05D004130 ORTHO05D004705 2.1e-26 122.1 82 72.0
Medtr5g026740 Medicago truncatula HOM05D004130 ORTHO05D004705 2.1e-26 122.1 84 70.2
TAR375G1053 Trochodendron aralioides HOM05D004130 ORTHO05D004705 2.1e-26 122.1 82 70.7
GSVIVG01022804001 Vitis vinifera HOM05D004130 ORTHO05D004705 2.1e-26 122.1 86 68.6
Gorai.007G349800 Gossypium raimondii HOM05D004130 ORTHO05D004705 2.7e-26 121.7 82 72.0
Sopen08g024340 Solanum pennellii HOM05D004130 ORTHO05D004705 2.7e-26 121.7 87 69.0
Cpa.g.c33773 Carica papaya HOM05D004130 ORTHO05D004705 3.6e-26 121.3 83 69.9
MELO3C031937.2 Cucumis melo HOM05D004130 ORTHO05D004705 3.6e-26 121.3 82 73.2
THA.LOC104798518 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 3.6e-26 121.3 87 70.1
Actinidia14738 Actinidia chinensis HOM05D004130 ORTHO05D004705 4.7e-26 120.9 87 69.0
Dinv41817 Davidia involucrata HOM05D004130 ORTHO05D004705 4.7e-26 120.9 87 67.8
Gohir.D11G319800 Gossypium hirsutum HOM05D004130 ORTHO05D004705 4.7e-26 120.9 83 68.7
Gorai.007G349900 Gossypium raimondii HOM05D004130 ORTHO05D004705 4.7e-26 120.9 83 68.7
MD00G1002100 Malus domestica HOM05D004130 ORTHO05D004705 4.7e-26 120.9 83 69.9
Zm00001eb378890 Zea mays HOM05D004130 ORTHO05D004705 4.7e-26 120.9 82 72.0
Sabra03G0070800 Salix brachista HOM05D004130 ORTHO05D004705 6.1e-26 120.6 87 67.8
Sed0010064 Sechium edule HOM05D004130 ORTHO05D004705 6.1e-26 120.6 82 72.0
Migut.E01354 Erythranthe guttata HOM05D004130 ORTHO05D004705 8.0e-26 120.2 82 69.5
HanXRQChr17g0537111 Helianthus annuus HOM05D004130 ORTHO05D004705 8.0e-26 120.2 87 70.1
PGSC0003DMG400030867 Solanum tuberosum HOM05D004130 ORTHO05D004705 8.0e-26 120.2 87 67.8
A05p25500 Brassica napus HOM05D004130 ORTHO05D004705 1.0e-25 119.8 81 74.1
BraA05t21434Z Brassica rapa HOM05D004130 ORTHO05D004705 1.0e-25 119.8 81 74.1
FvH4_5g24090 Fragaria vesca HOM05D004130 ORTHO05D004705 1.0e-25 119.8 82 70.7
FAN04G1172 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.0e-25 119.8 82 70.7
FAN13G0805 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.0e-25 119.8 82 70.7
FAN18G1566 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.0e-25 119.8 82 70.7
FAN18G3743 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.0e-25 119.8 82 70.7
Gohir.D11G319700 Gossypium hirsutum HOM05D004130 ORTHO05D004705 1.0e-25 119.8 82 70.7
Nn1g02053 Nelumbo nucifera HOM05D004130 ORTHO05D004705 1.0e-25 119.8 87 67.8
QL12p001893 Quercus lobata HOM05D004130 ORTHO05D004705 1.0e-25 119.8 86 67.4
COL.COLO4_37232 Corchorus olitorius HOM05D004130 ORTHO05D004705 1.4e-25 119.4 82 69.5
Oeu046800.1 Olea europaea HOM05D004130 ORTHO05D004705 1.4e-25 119.4 82 68.3
TWI12G1099 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 1.4e-25 119.4 87 67.8
TAR374G0121 Trochodendron aralioides HOM05D004130 ORTHO05D004705 1.4e-25 119.4 87 66.7
Dinv25573 Davidia involucrata HOM05D004130 ORTHO05D004705 1.8e-25 119.0 82 70.7
ECA240G1912 Erigeron canadensis HOM05D000302 ORTHO05D000334 1.8e-25 119.0 82 70.7
ECA246G1091 Erigeron canadensis HOM05D004130 ORTHO05D004705 1.8e-25 119.0 87 66.7
Manes.15G182400 Manihot esculenta HOM05D004130 ORTHO05D004705 1.8e-25 119.0 82 69.5
TPR.G17251 Trifolium pratense HOM05D004130 ORTHO05D004705 1.8e-25 119.0 84 69.0
Actinidia01260 Actinidia chinensis HOM05D004130 ORTHO05D004705 2.3e-25 118.6 87 66.7
Manes.17G006800 Manihot esculenta HOM05D004130 ORTHO05D004705 2.3e-25 118.6 82 68.3
Aa31LG2G14240 Aethionema arabicum HOM05D004130 ORTHO05D004705 3.0e-25 118.2 87 69.0
BolC5t32704H Brassica oleracea HOM05D004130 ORTHO05D004705 3.0e-25 118.2 81 72.8
Nn3g19256 Nelumbo nucifera HOM05D004130 ORTHO05D004705 3.0e-25 118.2 87 66.7
Potri.003G103700 Populus trichocarpa HOM05D004130 ORTHO05D004705 3.0e-25 118.2 87 66.7
Ca_25095_v3 Cicer arietinum L. HOM05D004130 ORTHO05D004705 4.0e-25 117.9 87 66.7
Ca_30395_v3 Cicer arietinum L. HOM05D004130 ORTHO05D004705 4.0e-25 117.9 87 66.7
Nitab4.5_0000030g0220 Nicotiana tabacum HOM05D004130 ORTHO05D004705 4.0e-25 117.9 82 69.5
Nitab4.5_0001023g0180 Nicotiana tabacum HOM05D004130 ORTHO05D004705 4.0e-25 117.9 82 69.5
THA.LOC104814400 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 4.0e-25 117.9 82 69.5
TWI36G0806 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 4.0e-25 117.9 82 69.5
BcaB03g13788 Brassica carinata HOM05D004130 ORTHO05D004705 5.2e-25 117.5 81 71.6
Duzib106G0486 Durio zibethinus HOM05D004130 ORTHO05D004705 5.2e-25 117.5 82 69.5
Hma1.2p1_1873F.1_g306170 Hydrangea macrophylla HOM05D004130 ORTHO05D004705 5.2e-25 117.5 82 65.9
MBI04_g27275_MAGBIO Magnolia biondii HOM05D004130 ORTHO05D004705 5.2e-25 117.5 82 68.3
SalBow8G1427 Salvia bowleyana HOM05D004130 ORTHO05D004705 5.2e-25 117.5 82 68.3
Atru.chr6.2108 Acer truncatum HOM05D004130 ORTHO05D004705 6.7e-25 117.1 82 69.5
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 6.7e-25 117.1 81 72.8
C05p39640 Brassica napus HOM05D004130 ORTHO05D004705 6.7e-25 117.1 81 72.8
CiPaw.12G072200 Carya illinoinensis HOM05D004130 ORTHO05D004705 6.7e-25 117.1 82 70.7
Rhsim11G0034100 Rhododendron simsii HOM05D004130 ORTHO05D004705 6.7e-25 117.1 82 68.3
Sp1g27510 Schrenkiella parvula HOM05D004130 ORTHO05D004705 6.7e-25 117.1 81 71.6
Thecc.03G325000 Theobroma cacao HOM05D004130 ORTHO05D004705 6.7e-25 117.1 82 68.3
Potri.001G130200 Populus trichocarpa HOM05D004130 ORTHO05D004705 8.8e-25 116.7 87 64.4
MSTRG.11879 Avicennia marina HOM05D004130 ORTHO05D004705 1.5e-24 115.9 82 65.9
CARHR031130 Cardamine hirsuta HOM05D004130 ORTHO05D004705 1.5e-24 115.9 86 67.4
CDE02G3877 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 1.5e-24 115.9 82 68.3
vmacro00053 Vaccinium macrocarpon HOM05D004130 ORTHO05D004705 1.5e-24 115.9 83 66.3
Carub.0001s3012 Capsella rubella HOM05D004130 ORTHO05D004705 2.0e-24 115.5 82 70.7
CDE11G1231 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 2.0e-24 115.5 82 67.1
BcaC07g37723 Brassica carinata HOM05D004130 ORTHO05D004705 2.6e-24 115.2 86 67.4
BolC8t48106H Brassica oleracea HOM05D004130 ORTHO05D004705 2.6e-24 115.2 86 67.4
Dinv37412 Davidia involucrata HOM05D004130 ORTHO05D004705 2.6e-24 115.2 86 65.1
PGR042G1275 Punica granatum HOM05D004130 ORTHO05D004705 2.6e-24 115.2 87 65.5
CANSAT21G0569 Cannabis sativa HOM05D004130 ORTHO05D004705 4.4e-24 114.4 82 69.5
CiPaw.11G103700 Carya illinoinensis HOM05D004130 ORTHO05D004705 4.4e-24 114.4 87 65.5
AL1G45890 Arabidopsis lyrata HOM05D004130 ORTHO05D004705 5.7e-24 114.0 87 65.5
Prupe.7G202100 Prunus persica HOM05D004130 ORTHO05D004705 5.7e-24 114.0 83 65.1
AT1G31812 Arabidopsis thaliana HOM05D004130 ORTHO05D004705 7.5e-24 113.6 86 65.1
Os06g0115300 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 7.5e-24 113.6 82 67.1
Thhalv10009206m.g Eutrema salsugineum HOM05D004130 ORTHO05D004705 9.7e-24 113.2 81 70.4
Eucgr.C00828 Eucalyptus grandis HOM05D004130 ORTHO05D004705 2.2e-23 112.1 80 65.0
Aqoxy4G01989 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 2.8e-23 111.7 88 65.9
BraA09t38994Z Brassica rapa HOM05D004130 ORTHO05D004705 4.8e-23 110.9 81 66.7
BraA08t33038Z Brassica rapa HOM05D004130 ORTHO05D004705 6.3e-23 110.5 82 68.3
BcaB07g32828 Brassica carinata HOM05D004130 ORTHO05D004705 8.3e-23 110.2 82 65.9
FAN23G0613 Fragaria x ananassa HOM05D004130 ORTHO05D004705 8.3e-23 110.2 82 63.4
BcaC05g27197 Brassica carinata HOM05D004130 ORTHO05D004705 1.1e-22 109.8 82 65.9
BolC5t31827H Brassica oleracea HOM05D004130 ORTHO05D004705 1.1e-22 109.8 82 65.9
FvH4_1g08340 Fragaria vesca HOM05D004130 ORTHO05D004705 1.1e-22 109.8 82 63.4
FAN19G1377 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.1e-22 109.8 82 63.4
FAN28G0738 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.4e-22 109.4 82 64.6
C05p31030 Brassica napus HOM05D004130 ORTHO05D004705 1.8e-22 109.0 82 64.6
Cc00_g07460 Coffea canephora HOM05D004130 ORTHO05D004705 2.4e-22 108.6 82 65.9
MD15G1215200 Malus domestica HOM05D004130 ORTHO05D004705 3.1e-22 108.2 78 65.4
MD06G1017000 Malus domestica HOM05D004130 ORTHO05D004705 4.1e-22 107.8 83 62.7
Mapoly0146s0043 Marchantia polymorpha HOM05D004130 ORTHO05D004705 4.1e-22 107.8 81 63.0
Thecc.09G080000 Theobroma cacao HOM05D004130 ORTHO05D004705 7.0e-22 107.1 82 61.0
AagrBONN_evm.TU.Sc2ySwM_344.2271 Anthoceros agrestis HOM05D004130 ORTHO05D004705 1.6e-21 105.9 81 63.0
Gohir.A07G014450 Gossypium hirsutum HOM05D004130 ORTHO05D004705 1.6e-21 105.9 79 62.0
Duzib150G0272 Durio zibethinus HOM05D004130 ORTHO05D004705 2.0e-21 105.5 78 61.5
FAN26G2855 Fragaria x ananassa HOM05D003252 ORTHO05D003640 2.0e-21 105.5 75 65.3
Gohir.D07G014100 Gossypium hirsutum HOM05D004130 ORTHO05D004705 3.5e-21 104.8 79 60.8
Gorai.001G014900 Gossypium raimondii HOM05D004130 ORTHO05D004705 3.5e-21 104.8 79 60.8
COL.COLO4_18121 Corchorus olitorius HOM05D004130 ORTHO05D004705 4.5e-21 104.4 82 58.5
CBR_g18879 Chara braunii HOM05D004130 ORTHO05D004705 1.3e-20 102.8 79 59.5
TAR636G0177 Trochodendron aralioides HOM05D004130 ORTHO05D004705 1.3e-20 102.8 74 67.6
SMO340G0182 Selaginella moellendorffii HOM05D004130 ORTHO05D004705 2.9e-20 101.7 81 63.0
BolC5t32707H Brassica oleracea HOM05D004130 ORTHO05D004705 3.8e-20 101.3 80 66.2
Pp3c14_11470 Physcomitrium patens HOM05D004130 ORTHO05D004705 9.4e-19 96.7 81 60.5
SEGI_06410 Sequoiadendron giganteum HOM05D004130 ORTHO05D004705 2.1e-18 95.5 74 60.8
Rhsim11G0034000 Rhododendron simsii HOM05D004130 ORTHO05D004705 6.1e-18 94.0 83 61.4
Atru.chr7.1674 Acer truncatum HOM05D004130 ORTHO05D004705 8.0e-18 93.6 78 55.1
PRCOL_00007032 Prasinoderma coloniale HOM05D004130 ORTHO05D004705 1.0e-17 93.2 81 54.3
GSVIVG01015105001 Vitis vinifera HOM05D004130 ORTHO05D004705 1.0e-17 93.2 60 68.3
MCO11G819 Micromonas commoda HOM05D004130 ORTHO05D004705 1.4e-17 92.8 77 53.2
Gohir.A11G304300 Gossypium hirsutum HOM05D004130 ORTHO05D004705 1.5e-16 89.4 60 71.7
Pp3c2_5450 Physcomitrium patens HOM05D004130 ORTHO05D004705 2.6e-16 88.6 81 56.8
Psat2g138640 Pisum sativum HOM05D011477 ORTHO05D004705 5.7e-16 87.4 62 69.4
Haze_08042 Corylus avellana HOM05D004130 ORTHO05D004705 1.4e-14 82.8 87 55.2
Haze_08052 Corylus avellana HOM05D004130 ORTHO05D004705 1.4e-14 82.8 87 55.2
Haze_25978 Corylus avellana HOM05D003252 ORTHO05D003640 1.8e-14 82.4 60 65.0
CSS0007814 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 7.0e-14 80.5 60 68.3
Cre02.g118850 Chlamydomonas reinhardtii HOM05D004130 ORTHO05D004705 1.7e-12 75.9 73 49.3
FAN26G3461 Fragaria x ananassa HOM05D003252 ORTHO05D003640 7.2e-11 70.5 74 52.7
Actinidia32778 Actinidia chinensis HOM05D004130 ORTHO05D004705 1.6e-10 69.3 57 59.6
Haze_27157 Corylus avellana HOM05D004130 ORTHO05D004705 8.0e-10 67.0 64 50.0
Haze_27764 Corylus avellana HOM05D004130 ORTHO05D004705 2.0e-08 62.4 61 49.2
A08p10380 Brassica napus HOM05D004130 ORTHO05D004705 1.7e-07 59.3 43 62.8
MD02G1087600 Malus domestica HOM05D004130 ORTHO05D004705 1.7e-07 59.3 40 60.0
MBI05_g04121_MAGBIO Magnolia biondii HOM05D001811 ORTHO05D001738 4.9e-07 57.8 61 52.5
Zm00001eb172160 Zea mays HOM05D001360 ORTHO05D001231 6.3e-07 57.4 40 75.0
A09p34530 Brassica napus HOM05D004130 ORTHO05D004705 8.3e-07 57.0 39 64.1
ATR0598G056 Amborella trichopoda HOM05D004130 ORTHO05D004705 2.4e-06 55.5 39 71.8
C05p40370 Brassica napus HOM05D004130 ORTHO05D004705 2.4e-06 55.5 38 65.8
BolC5t32777H Brassica oleracea HOM05D004130 ORTHO05D004705 2.4e-06 55.5 38 65.8
Cre14.g627800 Chlamydomonas reinhardtii HOM05D001964 ORTHO05D001879 3.1e-06 55.1 50 50.0


User provided reference genes

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