Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.8e-226 789.3 498 100.0
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 3.5e-214 748.4 519 91.7
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 2.1e-158 563.1 541 63.6
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 1.8e-138 496.9 535 56.6
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 2.3e-125 453.4 456 59.0
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 7.9e-110 401.7 565 49.7
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 2.2e-104 383.6 531 48.4
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 2.5e-103 380.2 391 57.8
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 4.7e-102 375.9 507 48.7
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 3.0e-101 373.2 392 54.8
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.1e-100 371.3 393 56.7
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.6e-100 370.2 391 55.0
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 2.6e-100 370.2 364 58.5
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 4.4e-100 369.4 390 55.6
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 7.5e-100 368.6 389 55.8
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 2.2e-99 367.1 538 47.2
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 2.8e-99 366.7 577 44.5
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 3.7e-99 366.3 506 47.4
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 3.7e-99 366.3 578 43.8
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 4.8e-99 365.9 404 54.0
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 6.3e-99 365.5 498 48.0
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 8.2e-99 365.2 519 49.1
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 1.1e-98 364.8 585 42.2
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.8e-98 364.0 529 46.7
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 2.4e-98 363.6 394 55.3
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 4.1e-98 362.8 354 59.9
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 4.1e-98 362.8 395 53.4
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 7.0e-98 362.1 529 46.3
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 7.0e-98 362.1 363 56.7
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 9.1e-98 361.7 535 44.7
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 9.1e-98 361.7 558 43.5
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 1.6e-97 360.9 392 54.8
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.0e-97 360.5 384 52.9
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.0e-97 360.5 392 55.4
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 2.0e-97 360.5 386 53.9
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 2.0e-97 360.5 386 53.9
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 2.7e-97 360.1 537 46.2
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.7e-97 360.1 537 46.2
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 4.5e-97 359.4 537 46.0
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 7.7e-97 358.6 400 52.8
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 1.0e-96 358.2 559 44.0
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.3e-96 357.8 392 55.1
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 1.7e-96 357.5 543 47.7
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 2.2e-96 357.1 553 46.1
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 5.0e-96 355.9 554 46.9
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 5.0e-96 355.9 554 46.9
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 3.2e-95 353.2 391 53.7
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 3.2e-95 353.2 530 49.1
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 3.2e-95 353.2 391 54.5
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 4.2e-95 352.8 395 52.7
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 9.4e-95 351.7 544 50.6
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 2.1e-94 350.5 373 56.3
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 2.1e-94 350.5 384 53.9
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 3.6e-94 349.7 400 53.2
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 8.0e-94 348.6 544 46.1
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 1.0e-93 348.2 519 48.6
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 1.0e-93 348.2 385 54.3
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 1.8e-93 347.4 389 58.6
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 2.3e-93 347.1 550 43.5
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 3.0e-93 346.7 511 49.9
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 4.0e-93 346.3 541 49.0
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 4.0e-93 346.3 409 51.8
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 4.0e-93 346.3 398 52.0
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 5.2e-93 345.9 541 44.4
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 6.8e-93 345.5 398 51.5
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 1.2e-92 344.7 530 46.0
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 1.2e-92 344.7 543 48.6
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 1.5e-92 344.4 398 51.3
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 2.0e-92 344.0 561 42.4
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 2.0e-92 344.0 367 55.0
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 2.0e-92 344.0 379 53.8
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 2.6e-92 343.6 530 45.8
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 3.4e-92 343.2 398 51.0
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 3.4e-92 343.2 398 51.0
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 4.4e-92 342.8 528 47.3
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 5.7e-92 342.4 516 48.6
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 9.8e-92 341.7 547 43.9
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 1.3e-91 341.3 577 48.4
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 1.3e-91 341.3 564 43.1
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 3.7e-91 339.7 554 43.0
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 4.8e-91 339.3 370 53.2
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 4.8e-91 339.3 530 44.3
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 6.3e-91 339.0 394 51.8
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 5.4e-90 335.9 404 52.2
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 1.2e-89 334.7 368 53.3
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 1.6e-89 334.3 404 52.2
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 1.6e-89 334.3 560 43.6
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 3.5e-89 333.2 544 44.5
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 5.9e-89 332.4 541 43.8
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 1.0e-88 331.6 549 42.8
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 1.0e-88 331.6 376 52.7
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 2.9e-88 330.1 547 43.9
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 6.5e-88 328.9 393 50.9
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 6.5e-88 328.9 555 42.9
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 4.2e-87 326.2 390 52.6
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 7.2e-87 325.5 546 41.8
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 1.6e-86 324.3 404 50.7
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 1.0e-85 321.6 567 40.4
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 9.8e-84 315.1 537 47.5
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 1.3e-83 314.7 397 50.1
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 2.4e-82 310.5 386 54.9
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 2.7e-81 307.0 466 44.2
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 3.8e-80 303.1 382 49.5
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 7.3e-79 298.9 503 43.1
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 1.0e-77 295.0 472 43.6
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.5e-76 291.2 240 65.4
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.7e-75 287.7 364 48.4
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 3.7e-75 286.6 217 66.8
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 4.9e-75 286.2 243 64.6
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 1.8e-74 284.3 359 49.3
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 9.8e-68 261.9 518 40.3
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 4.7e-54 216.5 143 72.7
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.7e-49 200.7 134 72.4
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 1.1e-47 195.3 383 37.6
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 8.1e-46 189.1 363 36.4
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 9.9e-44 182.2 347 37.8
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 3.8e-43 180.3 237 44.3
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 6.4e-43 179.5 256 42.2
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 4.8e-38 163.3 108 71.3
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 8.1e-38 162.5 315 40.3
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 9.0e-37 159.1 192 49.0
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 3.8e-35 153.7 346 34.7
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 8.1e-30 136.0 127 55.1
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 3.8e-27 127.1 360 40.0
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 8.4e-27 125.9 105 61.9
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 8.4e-27 125.9 105 61.9
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 2.4e-26 124.4 175 44.6
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 2.4e-26 124.4 175 44.6
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 7.1e-26 122.9 107 58.9
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 8.7e-24 115.9 175 43.4
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 3.0e-16 90.9 86 46.5
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 1.9e-15 88.2 195 37.9
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 6.9e-13 79.7 64 60.9
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 1.3e-11 75.5 263 29.7
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 1.7e-11 75.1 184 38.0
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 1.4e-10 72.0 238 27.7
Ciclev10027463m.g Citrus clementina HOM05D000285 ORTHO05D000241 2.3e-08 64.7 207 26.6
PRCOL_00000761 Prasinoderma coloniale HOM05D005450 ORTHO05D006880 6.7e-08 63.2 186 31.7
MBI05_g35605_MAGBIO Magnolia biondii HOM05D006053 ORTHO05D008381 5.7e-07 60.1 241 24.1
unitig_0.g1413 Utricularia gibba HOM05D000069 ORTHO05D000060 7.4e-07 59.7 171 24.0
Sc20g0002520 Simmondsia chinensis HOM05D006053 ORTHO05D008381 2.2e-06 58.2 213 24.4
Lsat_1_v5_gn_5_13821 Lactuca sativa HOM05D000142 ORTHO05D001253 3.7e-06 57.4 171 25.7
DCAR_015208 Daucus carota HOM05D006053 ORTHO05D008381 4.8e-06 57.0 233 24.9
Aa31LG3G6050 Aethionema arabicum HOM05D000142 ORTHO05D001253 6.3e-06 56.6 233 23.2
Nitab4.5_0001277g0050 Nicotiana tabacum HOM05D006053 ORTHO05D008381 6.3e-06 56.6 226 25.7


User provided reference genes

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