Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 3.5e-65 251.5 130 100.0
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 8.0e-38 160.6 151 63.6
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 2.3e-32 142.5 125 64.8
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 1.7e-16 89.7 54 81.5
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 3.9e-16 88.6 130 44.6
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.1e-15 87.0 54 77.8
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 4.3e-15 85.1 54 75.9
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 5.6e-15 84.7 54 77.8
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 5.6e-15 84.7 54 77.8
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 5.6e-15 84.7 96 54.2
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 7.3e-15 84.3 54 75.9
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 9.6e-15 84.0 54 74.1
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.3e-14 83.6 106 51.9
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.6e-14 83.2 131 45.0
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 2.1e-14 82.8 54 72.2
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 2.1e-14 82.8 54 72.2
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 2.1e-14 82.8 54 72.2
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 2.1e-14 82.8 131 45.0
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 2.8e-14 82.4 54 72.2
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 2.8e-14 82.4 54 72.2
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 2.8e-14 82.4 54 72.2
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 3.6e-14 82.0 54 72.2
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 3.6e-14 82.0 54 72.2
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 3.6e-14 82.0 54 70.4
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 3.6e-14 82.0 131 42.7
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 4.8e-14 81.6 54 74.1
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 4.8e-14 81.6 54 74.1
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 4.8e-14 81.6 54 72.2
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 4.8e-14 81.6 54 72.2
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 6.2e-14 81.3 54 72.2
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 6.2e-14 81.3 54 72.2
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 8.1e-14 80.9 54 72.2
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 8.1e-14 80.9 54 75.9
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 8.1e-14 80.9 180 35.0
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 1.1e-13 80.5 54 72.2
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 1.4e-13 80.1 54 70.4
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 1.4e-13 80.1 54 70.4
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.4e-13 80.1 54 75.9
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 1.8e-13 79.7 145 38.6
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 2.4e-13 79.3 54 70.4
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.4e-13 79.3 55 69.1
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 3.1e-13 79.0 54 66.7
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 3.1e-13 79.0 91 56.0
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 3.1e-13 79.0 121 49.6
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 3.1e-13 79.0 176 34.7
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 3.1e-13 79.0 54 72.2
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 4.0e-13 78.6 144 38.2
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 5.3e-13 78.2 119 48.7
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 5.3e-13 78.2 118 43.2
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 5.3e-13 78.2 54 70.4
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 5.3e-13 78.2 66 59.1
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 5.3e-13 78.2 54 72.2
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 6.9e-13 77.8 135 40.7
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 6.9e-13 77.8 118 42.4
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 9.0e-13 77.4 118 47.5
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 9.0e-13 77.4 118 43.2
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 1.2e-12 77.0 76 59.2
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 1.2e-12 77.0 54 68.5
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.5e-12 76.6 54 68.5
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 2.0e-12 76.3 56 67.9
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 4.4e-12 75.1 130 40.8
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 4.4e-12 75.1 54 70.4
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 5.8e-12 74.7 54 64.8
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 7.6e-12 74.3 105 46.7
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 9.9e-12 73.9 117 43.6
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 9.9e-12 73.9 115 43.5
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.3e-11 73.6 54 70.4
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.3e-11 73.6 54 70.4
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 1.7e-11 73.2 106 44.3
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 2.2e-11 72.8 141 41.1
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 2.2e-11 72.8 101 46.5
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 2.2e-11 72.8 54 66.7
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 2.2e-11 72.8 115 43.5
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 2.9e-11 72.4 105 45.7
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.9e-11 72.4 105 45.7
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.9e-11 72.4 105 45.7
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.9e-11 72.4 115 43.5
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.9e-11 72.4 115 43.5
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 3.8e-11 72.0 115 42.6
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 4.9e-11 71.6 102 47.1
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 6.4e-11 71.2 110 43.6
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 6.4e-11 71.2 54 66.7
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 1.1e-10 70.5 56 66.1
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.1e-10 70.5 121 45.5
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 1.1e-10 70.5 82 52.4
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.4e-10 70.1 119 40.3
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.9e-10 69.7 54 66.7
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.9e-10 69.7 54 66.7
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 2.4e-10 69.3 102 49.0
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 2.4e-10 69.3 114 43.9
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.2e-10 68.9 56 62.5
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.2e-10 68.9 56 62.5
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.2e-10 68.9 56 62.5
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.2e-10 68.9 56 62.5
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 3.2e-10 68.9 54 61.1
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.2e-10 68.6 141 37.6
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 4.2e-10 68.6 141 37.6
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 5.4e-10 68.2 54 68.5
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 9.3e-10 67.4 106 39.6
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 9.3e-10 67.4 141 36.9
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 1.2e-09 67.0 54 63.0
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 1.6e-09 66.6 54 64.8
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 2.1e-09 66.2 118 44.9
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 4.6e-09 65.1 106 39.6
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 4.6e-09 65.1 54 64.8
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 6.0e-09 64.7 72 51.4
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 1.3e-08 63.5 54 61.1
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 2.3e-08 62.8 54 57.4
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 2.3e-08 62.8 103 44.7
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 3.9e-08 62.0 78 53.8
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 1.5e-07 60.1 46 63.0
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 2.1e-06 56.2 66 48.5


User provided reference genes

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