Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 5.5e-160 567.8 326 100.0
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.2e-127 460.3 328 86.9
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 4.9e-108 395.2 333 65.5
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 4.0e-94 349.0 331 64.7
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 8.7e-73 278.1 327 52.0
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 3.2e-67 259.6 332 48.5
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 5.8e-61 238.8 332 47.3
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 7.9e-58 228.4 317 44.5
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 1.5e-56 224.2 330 44.2
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 3.3e-56 223.0 330 43.3
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 5.6e-56 222.2 327 42.5
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.1e-55 220.3 331 42.6
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 2.4e-54 216.9 328 42.1
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 3.1e-54 216.5 332 42.8
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 5.3e-54 215.7 316 44.0
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 5.3e-54 215.7 337 42.4
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 2.6e-53 213.4 333 45.3
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 6.5e-52 208.8 328 43.3
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 1.1e-51 208.0 333 44.4
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.9e-51 207.2 325 44.0
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 3.2e-51 206.5 325 44.3
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 4.2e-51 206.1 333 42.3
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 5.5e-51 205.7 329 41.3
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.1e-50 203.8 317 43.5
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 7.9e-50 201.8 324 39.8
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 1.1e-48 198.0 344 40.7
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.6e-47 194.1 326 41.7
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 3.7e-47 193.0 319 40.1
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 4.8e-47 192.6 334 41.0
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 6.3e-47 192.2 338 40.2
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 8.2e-47 191.8 330 39.7
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 1.4e-46 191.0 330 38.8
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 2.4e-46 190.3 328 41.8
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 6.9e-46 188.7 356 42.1
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 9.0e-46 188.3 324 37.3
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 2.0e-45 187.2 324 40.1
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.6e-45 186.8 329 39.5
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 2.6e-45 186.8 358 39.1
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 4.5e-45 186.0 357 38.9
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 4.5e-45 186.0 342 40.1
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 1.3e-44 184.5 332 39.2
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 2.2e-44 183.7 307 41.7
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.8e-44 183.0 356 44.9
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 1.1e-43 181.4 341 42.2
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 1.4e-43 181.0 334 38.3
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.4e-43 181.0 347 46.7
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 1.4e-43 181.0 311 43.1
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 1.4e-43 181.0 347 38.9
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 5.5e-43 179.1 328 38.1
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 7.2e-43 178.7 379 35.6
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 9.4e-43 178.3 330 39.1
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 9.4e-43 178.3 343 37.0
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 1.2e-42 177.9 334 36.8
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 3.6e-42 176.4 337 38.0
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 4.6e-42 176.0 330 38.5
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.6e-42 176.0 334 38.0
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 4.6e-42 176.0 334 38.9
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.0e-41 174.9 331 36.6
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.0e-41 173.3 313 38.7
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 6.7e-41 172.2 338 36.7
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 1.1e-40 171.4 313 37.7
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 1.5e-40 171.0 329 37.1
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.5e-40 171.0 346 47.1
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 1.9e-40 170.6 331 39.9
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 2.5e-40 170.2 330 38.5
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 2.5e-40 170.2 347 45.0
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 5.7e-40 169.1 338 37.9
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 7.4e-40 168.7 357 36.7
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 7.4e-40 168.7 400 38.0
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 9.7e-40 168.3 391 33.5
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 1.3e-39 167.9 403 33.5
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.7e-39 167.5 380 41.3
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.2e-39 165.2 330 37.0
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 1.1e-38 164.9 337 37.4
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 1.8e-38 164.1 381 42.5
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 2.4e-38 163.7 330 37.3
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.4e-38 163.7 309 36.6
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 5.3e-38 162.5 323 34.4
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 9.1e-38 161.8 202 49.0
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.2e-37 161.4 380 40.0
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 3.4e-37 159.8 174 52.9
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 3.4e-37 159.8 316 37.7
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.9e-37 159.1 318 37.7
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 7.7e-37 158.7 324 34.9
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 1.0e-36 158.3 325 35.7
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 1.0e-36 158.3 385 39.2
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.3e-36 157.9 270 38.5
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.2e-36 157.1 194 48.5
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.9e-36 156.8 310 37.4
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 6.5e-36 155.6 314 36.3
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 6.5e-36 155.6 346 43.1
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 1.1e-35 154.8 342 42.4
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 1.9e-35 154.1 320 34.1
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 4.2e-35 152.9 318 33.3
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 4.2e-35 152.9 199 47.2
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 7.2e-35 152.1 170 50.0
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.6e-34 151.0 168 52.4
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.6e-34 151.0 168 52.4
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 2.1e-34 150.6 327 35.5
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.6e-34 149.8 320 35.6
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 3.6e-34 149.8 405 37.5
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 4.7e-34 149.4 325 35.7
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 6.1e-34 149.1 357 35.6
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 1.0e-33 148.3 231 54.1
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 1.4e-33 147.9 315 35.2
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 1.8e-33 147.5 170 48.8
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 1.5e-32 144.4 300 34.3
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 1.5e-32 144.4 299 34.8
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 1.5e-32 144.4 300 34.3
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 5.7e-32 142.5 284 36.6
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 7.4e-32 142.1 206 44.2
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 1.7e-31 141.0 295 34.9
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 2.2e-31 140.6 334 35.0
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 3.7e-31 139.8 266 38.7
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 3.1e-30 136.7 314 35.0
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 3.1e-30 136.7 222 43.2
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 5.3e-30 136.0 144 49.3
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 7.0e-30 135.6 145 50.3
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 9.1e-30 135.2 182 45.6
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 1.5e-29 134.4 141 50.4
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 1.5e-29 134.4 141 50.4
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 2.0e-29 134.0 165 46.1
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 2.6e-29 133.7 155 47.7
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 1.3e-28 131.3 201 42.8
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 1.3e-28 131.3 240 38.8
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 2.9e-28 130.2 141 48.9
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 2.9e-28 130.2 298 32.9
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 6.5e-28 129.0 315 33.3
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 5.5e-27 125.9 114 55.3
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 5.5e-27 125.9 173 44.5
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 9.4e-27 125.2 296 33.1
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 9.4e-27 125.2 296 33.1
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 1.6e-26 124.4 299 34.1
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 6.1e-26 122.5 162 44.4
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 3.9e-25 119.8 156 44.2
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 1.5e-24 117.9 297 32.3
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 1.7e-23 114.4 302 31.8
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 4.8e-23 112.8 158 43.0
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.1e-22 111.7 401 29.2
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.8e-22 110.9 354 29.9
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 4.1e-22 109.8 207 37.7
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.0e-21 107.5 127 49.6
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 7.7e-21 105.5 263 32.3
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.0e-20 105.1 317 32.5
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 5.0e-20 102.8 298 30.5
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 1.9e-19 100.9 99 56.6
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 4.7e-18 96.3 194 36.6
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 8.0e-18 95.5 96 52.1
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 2.6e-16 90.5 213 46.5
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.2e-15 87.4 126 41.3
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 4.1e-14 83.2 181 32.0
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 9.1e-14 82.0 98 46.9
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.1e-11 75.1 59 54.2
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.5e-11 73.9 105 45.7
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 1.8e-09 67.8 158 32.9


User provided reference genes

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