Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 7.4e-79 297.4 174 100.0
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 4.1e-37 158.7 117 72.6
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.2e-36 157.1 117 71.8
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.2e-35 152.9 111 72.1
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 6.5e-35 151.4 111 71.2
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 7.2e-34 147.9 181 58.6
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 1.7e-30 136.7 191 50.3
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 1.2e-28 130.6 118 59.3
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 5.0e-27 125.2 122 52.5
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 8.6e-27 124.4 121 52.1
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 1.0e-24 117.5 110 53.6
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.8e-21 106.7 106 48.1
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 1.8e-21 106.7 99 56.6
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 3.1e-21 105.9 100 49.0
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 3.1e-21 105.9 103 51.5
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 5.4e-21 105.1 106 48.1
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 7.0e-21 104.8 102 51.0
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 9.2e-21 104.4 110 46.4
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 1.6e-20 103.6 105 49.5
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.6e-20 103.6 115 45.2
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 2.7e-20 102.8 111 49.5
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 2.7e-20 102.8 115 45.2
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 2.7e-20 102.8 113 46.0
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 3.5e-20 102.4 93 51.6
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 4.5e-20 102.1 113 46.0
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 4.5e-20 102.1 113 46.0
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 7.8e-20 101.3 111 45.9
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 7.8e-20 101.3 105 48.6
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 7.8e-20 101.3 98 52.0
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 1.7e-19 100.1 98 48.0
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 2.3e-19 99.8 116 47.4
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 3.8e-19 99.0 111 45.0
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 5.0e-19 98.6 170 45.3
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 6.6e-19 98.2 102 49.0
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 8.6e-19 97.8 116 46.6
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 1.9e-18 96.7 109 47.7
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 4.3e-18 95.5 123 46.3
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 4.3e-18 95.5 123 46.3
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 4.3e-18 95.5 101 49.5
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 7.3e-18 94.7 98 46.9
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 7.3e-18 94.7 104 42.3
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 9.5e-18 94.4 123 45.5
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.6e-17 93.6 112 43.8
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 2.1e-17 93.2 106 44.3
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.1e-17 93.2 112 44.6
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 2.8e-17 92.8 109 44.0
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 1.8e-16 90.1 107 46.7
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 2.3e-16 89.7 102 46.1
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 3.0e-16 89.4 88 47.7
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 3.0e-16 89.4 109 45.9
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 3.0e-16 89.4 108 42.6
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 5.2e-16 88.6 111 41.4
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 6.8e-16 88.2 116 41.4
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 1.2e-15 87.4 98 44.9
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 1.5e-15 87.0 110 41.8
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 1.5e-15 87.0 108 45.4
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.4e-15 85.9 89 44.9
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 1.3e-14 84.0 102 40.2
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 1.1e-13 80.9 120 40.8
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 1.4e-13 80.5 120 40.0
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 1.4e-13 80.5 120 40.0
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 1.8e-13 80.1 120 40.8
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 2.4e-13 79.7 108 39.8
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 4.1e-13 79.0 117 40.2
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 4.1e-13 79.0 119 42.0
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 9.2e-13 77.8 121 38.0
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 1.2e-12 77.4 90 42.2
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 2.0e-12 76.6 120 38.3
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 2.7e-12 76.3 107 42.1
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 3.5e-12 75.9 107 41.1
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 4.6e-12 75.5 123 37.4
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 4.6e-12 75.5 107 41.1
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 4.6e-12 75.5 90 42.2
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 6.0e-12 75.1 109 39.4
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 6.0e-12 75.1 107 44.9
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 6.0e-12 75.1 125 38.4
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 6.0e-12 75.1 113 38.9
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 7.8e-12 74.7 108 40.7
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 1.3e-11 73.9 107 41.1
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 1.7e-11 73.6 125 37.6
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 3.0e-11 72.8 124 34.7
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 5.0e-11 72.0 102 39.2
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 6.6e-11 71.6 123 37.4
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 8.6e-11 71.2 112 33.9
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 7.3e-10 68.2 111 36.9
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 9.5e-10 67.8 123 35.8
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 9.5e-10 67.8 111 36.0
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 1.2e-09 67.4 79 45.6
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 2.1e-09 66.6 111 36.0
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 2.8e-09 66.2 109 36.7
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 1.4e-08 63.9 98 37.8
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.4e-08 63.9 60 53.3
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.3e-08 63.2 60 53.3
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 5.2e-08 62.0 75 45.3
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 1.2e-07 60.8 105 38.1
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 1.2e-07 60.8 75 44.0
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 2.6e-07 59.7 101 36.6
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 4.4e-07 58.9 90 36.7
FAN11G1050 Fragaria x ananassa HOM05D005423 ORTHO05D006223 5.8e-07 58.5 80 45.0
FAN03G0475 Fragaria x ananassa HOM05D005423 ORTHO05D006223 7.5e-07 58.2 64 48.4
FAN14G5542 Fragaria x ananassa HOM05D005423 ORTHO05D006223 7.5e-07 58.2 64 48.4
Lj6g0020123 Lotus japonicus HOM05D005305 ORTHO05D006394 1.3e-06 57.4 70 42.9
TPR.G19715 Trifolium pratense HOM05D005305 ORTHO05D006394 1.3e-06 57.4 75 42.7
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 1.7e-06 57.0 102 36.3
QL02p071341 Quercus lobata HOM05D002727 ORTHO05D002856 1.7e-06 57.0 106 34.0
VMungo0540G1828 Vigna mungo HOM05D005305 ORTHO05D006394 3.7e-06 55.8 104 38.5
arahy.Tifrunner.gnm1.ann1.I1A2NR Arachis hypogaea HOM05D005305 ORTHO05D006394 4.9e-06 55.5 76 44.7
arahy.Tifrunner.gnm1.ann1.ZL3PAB Arachis hypogaea HOM05D005305 ORTHO05D006394 4.9e-06 55.5 76 44.7
Ca_00097_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 4.9e-06 55.5 89 39.3
Ca_29935_v3 Cicer arietinum L. HOM05D005305 ORTHO05D006394 4.9e-06 55.5 89 39.3
Medtr2g007870 Medicago truncatula HOM05D005305 ORTHO05D006394 8.3e-06 54.7 59 49.2


User provided reference genes

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