Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007122 Chenopodium quinoa HOM05D001014 ORTHO05D000896 4.0e-116 421.4 208 100.0
AUR62019991 Chenopodium quinoa HOM05D001014 ORTHO05D000896 2.7e-27 126.3 98 70.4
Hma1.2p1_1136F.1_g260600 Hydrangea macrophylla HOM05D001014 ORTHO05D000896 4.2e-12 75.9 71 56.3
Hma1.2p1_1952F.1_g308810 Hydrangea macrophylla HOM05D001014 ORTHO05D000896 4.2e-12 75.9 71 56.3
EL10Ac5g12333 Beta vulgaris HOM05D001014 ORTHO05D000896 9.3e-12 74.7 75 58.7
Dinv39176 Davidia involucrata HOM05D001014 ORTHO05D000896 1.2e-11 74.3 71 57.7
SGA_v2.0_scaffold159G37701 Striga asiatica HOM05D001014 ORTHO05D000896 1.2e-11 74.3 70 62.9
Dinv21667 Davidia involucrata HOM05D001014 ORTHO05D000896 1.6e-11 73.9 71 57.7
Actinidia31509 Actinidia chinensis HOM05D001014 ORTHO05D000896 1.0e-10 71.2 94 50.0
Oeu040700.1 Olea europaea HOM05D001014 ORTHO05D000896 1.0e-10 71.2 71 53.5
Oeu028310.1 Olea europaea HOM05D001014 ORTHO05D000896 1.3e-10 70.9 91 45.1
SalBow7G1348 Salvia bowleyana HOM05D001014 ORTHO05D000896 3.0e-10 69.7 69 53.6
SalBow7G1696 Salvia bowleyana HOM05D001014 ORTHO05D000896 3.0e-10 69.7 69 53.6
CSS0009086 Camellia sinensis var. sinensis HOM05D001014 ORTHO05D000896 5.1e-10 68.9 99 44.4
SGA_v2.0_scaffold49G18273 Striga asiatica HOM05D001014 ORTHO05D000896 5.1e-10 68.9 75 54.7
Actinidia10844 Actinidia chinensis HOM05D001014 ORTHO05D000896 1.1e-09 67.8 71 54.9
Psat4g073360 Pisum sativum HOM05D001014 ORTHO05D000896 1.5e-09 67.4 93 40.9
Prupe.5G064500 Prunus persica HOM05D001014 ORTHO05D000896 1.5e-09 67.4 67 53.7
Duzib084G1008 Durio zibethinus HOM05D001014 ORTHO05D000896 2.5e-09 66.6 67 53.7
Cpa.g.sc89.65 Carica papaya HOM05D001014 ORTHO05D000896 3.3e-09 66.2 109 42.2
Eucgr.D02104 Eucalyptus grandis HOM05D001014 ORTHO05D000896 3.3e-09 66.2 68 58.8
Glyma.05G062500 Glycine max HOM05D001014 ORTHO05D000896 4.3e-09 65.9 76 52.6
arahy.Tifrunner.gnm1.ann1.6XTP94 Arachis hypogaea HOM05D001014 ORTHO05D000896 5.6e-09 65.5 92 44.6
Manes.02G041700 Manihot esculenta HOM05D001014 ORTHO05D000896 5.6e-09 65.5 67 52.2
PGR042G2940 Punica granatum HOM05D001014 ORTHO05D000896 5.6e-09 65.5 76 51.3
Duzib068G0391 Durio zibethinus HOM05D001014 ORTHO05D000896 7.4e-09 65.1 67 56.7
CSS0035616 Camellia sinensis var. sinensis HOM05D001014 ORTHO05D000896 9.6e-09 64.7 88 46.6
Cfa012695 Carpinus fangiana HOM05D001014 ORTHO05D000896 9.6e-09 64.7 67 52.2
Haze_07938 Corylus avellana HOM05D001014 ORTHO05D000896 9.6e-09 64.7 67 52.2
Duzib205G1606 Durio zibethinus HOM05D001014 ORTHO05D000896 9.6e-09 64.7 93 46.2
FvH4_5g19550 Fragaria vesca HOM05D001014 ORTHO05D000896 9.6e-09 64.7 84 46.4
FAN04G0375 Fragaria x ananassa HOM05D001014 ORTHO05D000896 9.6e-09 64.7 84 46.4
FAN08G3045 Fragaria x ananassa HOM05D001014 ORTHO05D000896 9.6e-09 64.7 84 46.4
FAN13G2782 Fragaria x ananassa HOM05D001014 ORTHO05D000896 9.6e-09 64.7 84 46.4
FAN18G3617 Fragaria x ananassa HOM05D001014 ORTHO05D000896 9.6e-09 64.7 84 46.4
Solyc08g078310.3 Solanum lycopersicum HOM05D001014 ORTHO05D000896 9.6e-09 64.7 78 47.4
Sopen08g026810 Solanum pennellii HOM05D001014 ORTHO05D000896 9.6e-09 64.7 78 47.4
PGSC0003DMG400026238 Solanum tuberosum HOM05D001014 ORTHO05D000896 9.6e-09 64.7 78 47.4
arahy.Tifrunner.gnm1.ann1.FEG3IM Arachis hypogaea HOM05D001014 ORTHO05D000896 1.3e-08 64.3 92 44.6
CiPaw.12G049600 Carya illinoinensis HOM05D001014 ORTHO05D000896 1.3e-08 64.3 67 52.2
unitig_749.g13633 Utricularia gibba HOM05D001014 ORTHO05D007637 1.3e-08 64.3 80 47.5
Atru.chr9.1262 Acer truncatum HOM05D001014 ORTHO05D000896 1.6e-08 63.9 89 44.9
CiPaw.11G082600 Carya illinoinensis HOM05D001014 ORTHO05D000896 1.6e-08 63.9 67 47.8
Migut.H01528 Erythranthe guttata HOM05D001014 ORTHO05D000896 1.6e-08 63.9 141 35.5
Manes.01G084300 Manihot esculenta HOM05D001014 ORTHO05D000896 1.6e-08 63.9 82 46.3
TAR374G1540 Trochodendron aralioides HOM05D001014 ORTHO05D000896 1.6e-08 63.9 99 42.4
TAR375G0837 Trochodendron aralioides HOM05D001014 ORTHO05D000896 1.6e-08 63.9 97 42.3
Nitab4.5_0001590g0080 Nicotiana tabacum HOM05D001014 ORTHO05D000896 2.1e-08 63.5 80 47.5
Nitab4.5_0004337g0030 Nicotiana tabacum HOM05D001014 ORTHO05D000896 2.1e-08 63.5 80 47.5
MSTRG.12128 Avicennia marina HOM05D001014 ORTHO05D000896 3.7e-08 62.8 72 52.8
TPR.G37584 Trifolium pratense HOM05D001014 ORTHO05D000896 3.7e-08 62.8 101 42.6
TWI81G0723 Tripterygium wilfordii HOM05D001014 ORTHO05D000896 3.7e-08 62.8 77 50.6
MSTRG.14667 Avicennia marina HOM05D001014 ORTHO05D000896 4.8e-08 62.4 76 48.7
Medtr4g100570 Medicago truncatula HOM05D001014 ORTHO05D000896 4.8e-08 62.4 87 43.7
Thecc.03G247100 Theobroma cacao HOM05D001014 ORTHO05D000896 4.8e-08 62.4 67 52.2
Ca_21991_v3 Cicer arietinum L. HOM05D001014 ORTHO05D000896 6.2e-08 62.0 94 40.4
Eucgr.E00401 Eucalyptus grandis HOM05D001014 ORTHO05D000896 6.2e-08 62.0 67 50.7
Peaxi162Scf00346g01015 Petunia axillaris HOM05D001014 ORTHO05D000896 6.2e-08 62.0 41 68.3
RcHm_v2.0_Chr7g0204161 Rosa chinensis HOM05D001014 ORTHO05D000896 8.1e-08 61.6 68 54.4
GSVIVG01005818001 Vitis vinifera HOM05D001014 ORTHO05D000896 8.1e-08 61.6 180 33.9
Ciclev10022000m.g Citrus clementina HOM05D001014 ORTHO05D000896 1.1e-07 61.2 77 45.5
THA.LOC104812809 Tarenaya hassleriana HOM05D001014 ORTHO05D000896 1.1e-07 61.2 91 41.8
Aa31LG6G190 Aethionema arabicum HOM05D001014 ORTHO05D000896 1.4e-07 60.8 102 40.2
Gohir.A08G167700 Gossypium hirsutum HOM05D001014 ORTHO05D000896 1.4e-07 60.8 67 50.7
Gohir.D08G186500 Gossypium hirsutum HOM05D001014 ORTHO05D000896 1.4e-07 60.8 67 50.7
Gorai.004G196000 Gossypium raimondii HOM05D001014 ORTHO05D000896 1.4e-07 60.8 67 50.7
Sed0000200 Sechium edule HOM05D001014 ORTHO05D000896 1.4e-07 60.8 73 47.9
Glyma.17G144400 Glycine max HOM05D001014 ORTHO05D000896 2.4e-07 60.1 67 49.3
MD06G1054500 Malus domestica HOM05D001014 ORTHO05D000896 2.4e-07 60.1 68 51.5
BraA03t14134Z Brassica rapa HOM05D001014 ORTHO05D000896 4.0e-07 59.3 68 47.1
CSS0022895 Camellia sinensis var. sinensis HOM05D001014 ORTHO05D000896 4.0e-07 59.3 99 40.4
MD04G1061000 Malus domestica HOM05D001014 ORTHO05D000896 4.0e-07 59.3 67 49.3
Aa31LG10G14510 Aethionema arabicum HOM05D001014 ORTHO05D000896 5.3e-07 58.9 92 43.5
Rhsim07G0115300 Rhododendron simsii HOM05D001014 ORTHO05D000896 5.3e-07 58.9 82 48.8
BcaNung03463 Brassica carinata HOM05D001014 ORTHO05D000896 6.9e-07 58.5 68 47.1
Cc08_g12060 Coffea canephora HOM05D001014 ORTHO05D000896 6.9e-07 58.5 56 57.1
DCAR_006846 Daucus carota HOM05D001014 ORTHO05D000896 6.9e-07 58.5 52 59.6
Thhalv10026175m.g Eutrema salsugineum HOM05D001014 ORTHO05D000896 6.9e-07 58.5 103 42.7
COL.COLO4_37108 Corchorus olitorius HOM05D001014 ORTHO05D000896 1.5e-06 57.4 67 52.2
QL12p011206 Quercus lobata HOM05D001014 ORTHO05D000896 1.5e-06 57.4 39 66.7
Sed0000023 Sechium edule HOM05D001014 ORTHO05D000896 1.5e-06 57.4 93 39.8
Sp7g16740 Schrenkiella parvula HOM05D001014 ORTHO05D000896 2.6e-06 56.6 95 41.1
Thecc.01G392000 Theobroma cacao HOM05D001014 ORTHO05D000896 2.6e-06 56.6 40 70.0
arahy.Tifrunner.gnm1.ann1.DA53FY Arachis hypogaea HOM05D001014 ORTHO05D000896 3.4e-06 56.2 67 46.3
arahy.Tifrunner.gnm1.ann1.E179ZT Arachis hypogaea HOM05D001014 ORTHO05D000896 3.4e-06 56.2 67 46.3
HanXRQChr06g0164471 Helianthus annuus HOM05D001014 ORTHO05D000896 3.4e-06 56.2 40 62.5
VMungo0251G2831 Vigna mungo HOM05D001014 ORTHO05D000896 3.4e-06 56.2 133 35.3
Phvul.003G223000 Phaseolus vulgaris HOM05D001014 ORTHO05D000896 4.5e-06 55.8 137 35.0
BcaC07g40560 Brassica carinata HOM05D001014 ORTHO05D000896 5.8e-06 55.5 67 50.7
BolC8t51132H Brassica oleracea HOM05D001504 ORTHO05D001394 5.8e-06 55.5 67 50.7
CARHR170730 Cardamine hirsuta HOM05D001014 ORTHO05D000896 5.8e-06 55.5 80 52.5
Migut.N01754 Erythranthe guttata HOM05D001014 ORTHO05D000896 5.8e-06 55.5 100 41.0
MSTRG.4923 Avicennia marina HOM05D001014 ORTHO05D000896 7.6e-06 55.1 67 43.3
Lsat_1_v5_gn_6_93480 Lactuca sativa HOM05D001014 ORTHO05D000896 7.6e-06 55.1 40 62.5
A03p50440 Brassica napus HOM05D001014 ORTHO05D000896 9.9e-06 54.7 116 37.9
Lj4g0011640 Lotus japonicus HOM05D001014 ORTHO05D000896 9.9e-06 54.7 185 31.9


User provided reference genes

Program Settings