Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 5.0e-27 124.4 101 100.0
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 2.5e-26 122.1 101 99.0
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 5.1e-16 87.8 100 53.0
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 6.7e-16 87.4 109 52.3
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.5e-15 86.3 101 55.4
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 2.0e-15 85.9 109 51.4
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 2.0e-15 85.9 109 51.4
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 2.6e-15 85.5 109 51.4
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 3.3e-15 85.1 105 52.4
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 3.3e-15 85.1 105 52.4
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 4.4e-15 84.7 105 52.4
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 4.4e-15 84.7 105 52.4
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 5.7e-15 84.3 105 48.6
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 2.8e-14 82.0 107 52.3
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 3.7e-14 81.6 109 49.5
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 3.7e-14 81.6 105 47.6
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 6.3e-14 80.9 105 57.1
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 8.2e-14 80.5 102 53.9
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 8.2e-14 80.5 109 48.6
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 1.1e-13 80.1 111 49.5
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 2.4e-13 79.0 108 46.3
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.4e-13 79.0 109 47.7
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 5.3e-13 77.8 109 48.6
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 5.3e-13 77.8 101 52.5
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 5.3e-13 77.8 101 52.5
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 7.0e-13 77.4 101 52.5
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 7.0e-13 77.4 108 46.3
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 9.1e-13 77.0 109 48.6
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 1.2e-12 76.6 106 49.1
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 1.6e-12 76.3 111 47.7
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 1.6e-12 76.3 91 49.5
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 1.6e-12 76.3 105 46.7
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 2.6e-12 75.5 111 46.8
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 2.6e-12 75.5 109 48.6
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 2.6e-12 75.5 104 48.1
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 2.6e-12 75.5 107 44.9
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 4.5e-12 74.7 90 52.2
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 5.9e-12 74.3 111 44.1
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 5.9e-12 74.3 97 52.6
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 5.9e-12 74.3 102 50.0
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.0e-11 73.6 47 85.1
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.0e-11 73.6 47 85.1
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 1.0e-11 73.6 47 85.1
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.3e-11 73.2 104 47.1
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 1.7e-11 72.8 101 45.5
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 2.9e-11 72.0 102 63.7
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 2.9e-11 72.0 100 48.0
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 3.8e-11 71.6 90 57.8
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 3.8e-11 71.6 93 47.3
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 6.5e-11 70.9 109 47.7
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 1.1e-10 70.1 102 50.0
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 1.1e-10 70.1 98 74.5
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 1.9e-10 69.3 100 60.0
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 1.9e-10 69.3 100 47.0
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 2.5e-10 68.9 90 51.1
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 4.2e-10 68.2 98 46.9
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 4.2e-10 68.2 101 46.5
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 9.4e-10 67.0 100 46.0
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 1.2e-09 66.6 94 47.9
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 1.6e-09 66.2 101 45.5
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.6e-09 66.2 92 46.7
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 2.1e-09 65.9 94 45.7
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 2.7e-09 65.5 97 47.4
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 2.7e-09 65.5 98 45.9
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 3.6e-09 65.1 94 47.9
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 3.6e-09 65.1 47 74.5
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 6.1e-09 64.3 48 75.0
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 8.0e-09 63.9 47 74.5
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 8.0e-09 63.9 97 46.4
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 1.0e-08 63.5 93 46.2
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 1.0e-08 63.5 104 46.2
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.8e-08 62.8 90 56.7
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 1.8e-08 62.8 105 42.9
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 1.8e-08 62.8 93 48.4
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 1.8e-08 62.8 47 74.5
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 2.3e-08 62.4 102 43.1
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 2.3e-08 62.4 47 74.5
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 3.0e-08 62.0 92 46.7
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 5.2e-08 61.2 90 46.7
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 6.7e-08 60.8 93 46.2
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 8.8e-08 60.5 90 46.7
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 8.8e-08 60.5 47 68.1
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 8.8e-08 60.5 99 43.4
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 8.8e-08 60.5 47 68.1
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 8.8e-08 60.5 47 68.1
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 1.1e-07 60.1 91 48.4
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 1.1e-07 60.1 95 42.1
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 1.5e-07 59.7 47 68.1
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 1.5e-07 59.7 92 46.7
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 2.0e-07 59.3 47 68.1
Dinv44108 Davidia involucrata HOM05D006762 ORTHO05D003505 2.0e-07 59.3 38 81.6
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 2.0e-07 59.3 47 68.1
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 2.0e-07 59.3 95 42.1
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 2.0e-07 59.3 45 71.1
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 2.0e-07 59.3 47 68.1
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 2.6e-07 58.9 95 41.1
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 2.6e-07 58.9 94 44.7
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 2.6e-07 58.9 100 44.0
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 2.6e-07 58.9 98 44.9
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 3.3e-07 58.5 95 44.2
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 3.3e-07 58.5 99 43.4
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 3.3e-07 58.5 90 45.6
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 3.3e-07 58.5 47 68.1
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 3.3e-07 58.5 47 68.1
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 4.4e-07 58.2 43 72.1
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 4.4e-07 58.2 43 72.1
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 4.4e-07 58.2 47 63.8
Os02g0658300 Oryza sativa ssp. japonica HOM05D006762 ORTHO05D003505 4.4e-07 58.2 41 82.9
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 4.4e-07 58.2 47 66.0
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 5.7e-07 57.8 47 63.8
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 5.7e-07 57.8 47 66.0
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 5.7e-07 57.8 47 66.0
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 5.7e-07 57.8 47 66.0
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 5.7e-07 57.8 47 63.8
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 5.7e-07 57.8 92 46.7
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 9.7e-07 57.0 47 61.7
arahy.Tifrunner.gnm1.ann1.8JK4ZI Arachis hypogaea HOM05D006762 ORTHO05D003505 1.3e-06 56.6 91 61.5
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.3e-06 56.6 47 61.7
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.3e-06 56.6 47 61.7
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.7e-06 56.2 47 61.7
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.7e-06 56.2 47 59.6
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 1.7e-06 56.2 47 61.7
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 1.7e-06 56.2 47 66.0
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 1.7e-06 56.2 47 66.0
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 2.2e-06 55.8 47 59.6
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 2.2e-06 55.8 47 61.7
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.2e-06 55.8 46 67.4
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 2.2e-06 55.8 47 61.7
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 2.8e-06 55.5 47 61.7
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 2.8e-06 55.5 47 61.7
arahy.Tifrunner.gnm1.ann1.A5XQNM Arachis hypogaea HOM05D006762 ORTHO05D003505 2.8e-06 55.5 38 78.9
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 2.8e-06 55.5 47 61.7
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 2.8e-06 55.5 47 59.6
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 2.8e-06 55.5 46 65.2
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 2.8e-06 55.5 36 86.1
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 3.7e-06 55.1 47 63.8
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 3.7e-06 55.1 47 61.7
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 3.7e-06 55.1 47 63.8
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 3.7e-06 55.1 47 61.7
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 3.7e-06 55.1 47 63.8
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 3.7e-06 55.1 47 61.7
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 3.7e-06 55.1 47 63.8
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 3.7e-06 55.1 47 61.7
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 3.7e-06 55.1 47 63.8
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 3.7e-06 55.1 47 61.7
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 3.7e-06 55.1 47 63.8
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 4.8e-06 54.7 47 63.8
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 4.8e-06 54.7 47 66.0
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 4.8e-06 54.7 44 65.9
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 4.8e-06 54.7 47 63.8
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 4.8e-06 54.7 44 61.4
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 4.8e-06 54.7 47 59.6
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 4.8e-06 54.7 47 59.6
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 4.8e-06 54.7 45 66.7
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 8.2e-06 53.9 90 44.4


User provided reference genes

Program Settings