Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.8e-140 501.9 248 100.0
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 9.7e-133 476.9 248 95.6
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.3e-113 413.3 251 82.5
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 3.3e-109 398.7 247 80.2
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.8e-102 376.3 248 75.0
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 6.6e-97 357.8 248 71.0
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 9.5e-96 354.0 252 71.0
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 1.6e-95 353.2 248 71.0
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 3.6e-95 352.1 248 69.0
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 4.7e-95 351.7 248 70.6
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 6.1e-95 351.3 248 70.2
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 1.8e-94 349.7 248 70.6
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 1.8e-94 349.7 248 70.2
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 3.0e-94 349.0 248 70.6
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 4.0e-94 348.6 248 69.8
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 5.2e-94 348.2 247 69.2
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 8.9e-94 347.4 248 69.4
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 1.5e-93 346.7 248 71.8
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 1.5e-93 346.7 248 70.2
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 2.0e-93 346.3 248 69.8
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.6e-93 345.9 252 69.4
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 2.6e-93 345.9 249 69.9
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 3.4e-93 345.5 249 69.5
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 5.7e-93 344.7 252 68.7
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 7.5e-93 344.4 248 69.4
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 7.5e-93 344.4 248 69.0
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 1.7e-92 343.2 252 68.3
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 2.8e-92 342.4 252 67.9
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 3.7e-92 342.0 248 67.7
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.9e-92 341.7 248 67.3
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 8.3e-92 340.9 248 67.3
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 1.1e-91 340.5 248 67.3
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 3.1e-91 339.0 245 69.4
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 7.0e-91 337.8 221 73.8
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 9.2e-91 337.4 252 68.7
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.6e-90 336.7 248 67.7
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 1.6e-90 336.7 248 68.5
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 2.0e-90 336.3 248 66.9
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 2.7e-90 335.9 251 67.3
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 3.5e-90 335.5 248 66.9
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 5.9e-90 334.7 251 66.5
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 7.8e-90 334.3 248 66.9
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 1.0e-89 334.0 248 67.7
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 1.3e-89 333.6 249 67.5
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 1.3e-89 333.6 248 66.9
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 2.3e-89 332.8 249 66.7
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 2.3e-89 332.8 248 68.5
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 2.9e-89 332.4 248 66.5
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 3.8e-89 332.0 248 66.5
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 5.0e-89 331.6 250 68.0
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 8.6e-89 330.9 248 66.5
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.1e-88 330.5 249 65.9
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 1.1e-88 330.5 248 67.3
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.1e-88 330.5 249 66.3
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 2.5e-88 329.3 249 66.7
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 3.3e-88 328.9 249 65.5
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 3.3e-88 328.9 249 65.1
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 4.3e-88 328.6 248 64.9
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 4.3e-88 328.6 230 70.0
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 4.3e-88 328.6 249 64.7
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 5.6e-88 328.2 249 64.7
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 7.3e-88 327.8 249 65.1
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 7.3e-88 327.8 249 65.1
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 7.3e-88 327.8 249 65.1
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 2.8e-87 325.9 239 67.4
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 3.6e-87 325.5 249 64.3
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 4.7e-87 325.1 248 64.1
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 8.0e-87 324.3 248 65.7
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 3.1e-86 322.4 248 66.5
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.0e-86 322.0 249 65.9
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 5.2e-86 321.6 253 63.2
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 1.5e-85 320.1 248 63.7
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 3.4e-85 318.9 248 64.9
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 4.4e-85 318.5 249 64.3
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 4.4e-85 318.5 248 65.7
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 5.8e-85 318.2 248 66.1
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 1.2e-82 310.5 249 64.7
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 1.3e-81 307.0 254 61.8
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 3.9e-81 305.4 256 60.9
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 3.3e-80 302.4 248 62.9
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 4.3e-80 302.0 251 62.2
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 9.5e-80 300.8 248 62.1
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.2e-79 300.4 220 67.3
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 1.2e-79 300.4 245 62.4
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 3.6e-79 298.9 248 63.3
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 5.2e-78 295.0 220 64.5
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 2.2e-76 289.7 225 63.6
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 2.9e-76 289.3 222 62.6
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 4.9e-76 288.5 221 62.9
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 6.4e-76 288.1 218 62.4
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 1.1e-75 287.3 248 61.7
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.4e-75 287.0 221 62.9
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.2e-74 283.9 221 62.4
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.1e-74 283.1 218 63.8
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 3.5e-74 282.3 221 62.0
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 1.3e-73 280.4 239 59.8
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 5.1e-73 278.5 221 62.0
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 2.6e-69 266.2 218 59.6
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 5.4e-67 258.5 254 57.9
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 4.6e-66 255.4 219 55.7
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 6.0e-66 255.0 218 56.0
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 3.9e-65 252.3 201 61.2
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 3.9e-65 252.3 220 55.9
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 6.6e-65 251.5 218 55.0
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 6.6e-65 251.5 218 55.0
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.1e-64 250.8 218 55.5
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 2.5e-64 249.6 220 54.1
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 2.5e-64 249.6 220 54.1
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 5.6e-64 248.4 218 55.0
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.6e-63 246.9 218 53.2
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.6e-63 246.9 218 54.6
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 1.5e-61 240.4 218 53.2
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 1.5e-61 240.4 221 52.9
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 1.7e-60 236.9 222 51.4
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 2.2e-60 236.5 226 50.9
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 2.2e-60 236.5 193 60.6
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 2.9e-60 236.1 221 52.0
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 4.9e-60 235.3 216 57.4
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 8.4e-60 234.6 220 51.8
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 1.1e-59 234.2 221 51.1
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 3.2e-59 232.6 220 51.4
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.2e-59 232.6 220 51.4
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 3.2e-59 232.6 221 51.1
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 7.1e-59 231.5 221 51.1
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 1.2e-58 230.7 220 56.8
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 3.0e-57 226.1 217 53.0
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 5.1e-57 225.3 216 52.3
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 1.9e-56 223.4 200 57.5
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 2.1e-55 219.9 218 51.4
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.4e-54 216.5 198 54.0
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 9.0e-54 214.5 138 74.6
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.0e-53 213.4 184 55.4
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 9.9e-53 211.1 219 49.8
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 1.3e-52 210.7 219 49.8
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.7e-52 210.3 220 50.9
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 4.9e-52 208.8 219 49.8
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.6e-45 186.4 146 65.1
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 2.6e-45 186.4 185 54.6
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 3.4e-45 186.0 130 70.0
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 3.4e-45 186.0 155 58.7
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.9e-43 180.3 170 50.6
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.2e-42 177.6 231 45.9
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 5.1e-41 172.2 123 64.2
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 8.1e-39 164.9 223 43.0
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 1.4e-38 164.1 361 33.5
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 8.4e-36 154.8 131 63.4
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.4e-35 154.1 203 46.8
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 1.8e-33 147.1 185 47.6
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 9.6e-32 141.4 119 54.6
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 1.8e-30 137.1 249 36.1
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 9.0e-30 134.8 214 38.3
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 8.4e-28 128.3 106 57.5
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 1.8e-22 110.5 91 61.5
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.4e-22 110.2 114 46.5
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 6.5e-20 102.1 69 76.8
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.1e-19 101.3 179 38.5
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 5.5e-19 99.0 137 43.1
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 1.8e-17 94.0 65 70.8
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 8.8e-17 91.7 96 53.1
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 3.7e-15 86.3 59 67.8
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.0e-13 80.5 169 31.4
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 3.4e-13 79.7 66 57.6
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 1.4e-11 74.3 153 34.6
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.9e-11 73.9 67 56.7
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 1.2e-10 71.2 61 60.7
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 2.1e-10 70.5 83 42.2
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 8.8e-09 65.1 68 50.0
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 1.5e-08 64.3 66 53.0
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 3.7e-07 59.7 51 62.7


User provided reference genes

Program Settings