Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.5e-181 638.6 317 100.0
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.2e-167 593.2 317 92.7
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.2e-167 593.2 317 93.4
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 1.9e-165 585.9 317 90.9
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 5.7e-154 547.7 317 83.9
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 7.5e-154 547.4 317 84.9
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 1.2e-151 540.0 317 82.0
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 4.5e-151 538.1 315 82.2
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 2.2e-150 535.8 317 82.3
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 5.0e-150 534.6 317 81.7
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 6.5e-150 534.3 318 81.1
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 6.5e-150 534.3 317 81.7
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 1.1e-149 533.5 317 81.4
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 1.5e-149 533.1 317 81.7
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 1.5e-149 533.1 317 81.1
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 3.2e-149 531.9 315 81.6
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 9.4e-149 530.4 317 81.7
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 1.2e-148 530.0 317 81.4
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 1.6e-148 529.6 319 80.9
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 2.7e-148 528.9 315 80.6
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.7e-148 528.9 315 80.6
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.7e-148 528.9 315 80.6
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 3.6e-148 528.5 317 80.4
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 3.6e-148 528.5 315 81.6
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 8.0e-148 527.3 317 81.4
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 1.0e-147 526.9 317 79.2
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 1.0e-147 526.9 317 79.5
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 1.4e-147 526.6 317 79.5
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.8e-147 526.2 317 79.8
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 1.8e-147 526.2 317 80.8
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 2.3e-147 525.8 317 81.4
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 3.0e-147 525.4 289 88.9
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 3.0e-147 525.4 317 79.8
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 3.0e-147 525.4 317 80.8
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 4.0e-147 525.0 315 80.3
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 4.0e-147 525.0 317 79.5
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 5.2e-147 524.6 315 80.3
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 6.8e-147 524.2 317 79.5
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 8.8e-147 523.9 317 78.9
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 1.2e-146 523.5 317 81.7
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 1.2e-146 523.5 317 80.8
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 1.5e-146 523.1 317 80.4
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 1.5e-146 523.1 317 80.4
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 2.0e-146 522.7 317 80.8
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 2.6e-146 522.3 317 79.2
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 2.6e-146 522.3 317 80.8
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 2.6e-146 522.3 315 81.0
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 2.6e-146 522.3 317 80.4
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 7.5e-146 520.8 315 79.7
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 9.8e-146 520.4 317 80.8
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 9.8e-146 520.4 317 79.8
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 9.8e-146 520.4 317 79.5
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 9.8e-146 520.4 317 80.1
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 9.8e-146 520.4 317 80.4
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 9.8e-146 520.4 317 80.1
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.3e-145 520.0 317 80.1
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 1.3e-145 520.0 317 80.4
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 2.2e-145 519.2 317 80.1
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 2.2e-145 519.2 317 79.5
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 2.2e-145 519.2 317 79.5
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 2.8e-145 518.8 317 79.8
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 3.7e-145 518.5 315 79.7
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 6.3e-145 517.7 317 79.8
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 1.1e-144 516.9 317 79.8
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 1.4e-144 516.5 317 78.9
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 1.8e-144 516.2 317 77.9
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 1.8e-144 516.2 317 77.9
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 1.8e-144 516.2 317 78.5
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 1.8e-144 516.2 317 78.5
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 3.1e-144 515.4 317 79.5
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 4.1e-144 515.0 312 81.1
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 4.1e-144 515.0 317 77.9
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 4.1e-144 515.0 317 77.9
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 4.1e-144 515.0 309 79.3
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 7.0e-144 514.2 317 77.6
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 9.1e-144 513.8 317 80.4
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 9.1e-144 513.8 311 80.7
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 1.2e-143 513.5 317 79.2
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 1.6e-143 513.1 317 77.0
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 2.0e-143 512.7 332 77.1
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 2.7e-143 512.3 317 77.9
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 2.7e-143 512.3 317 77.9
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 2.7e-143 512.3 317 77.9
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 3.5e-143 511.9 317 77.6
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 3.5e-143 511.9 317 77.6
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 4.5e-143 511.5 317 77.0
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 4.5e-143 511.5 317 76.7
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 4.5e-143 511.5 317 77.6
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 4.5e-143 511.5 317 78.5
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 7.7e-143 510.8 317 77.6
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 7.7e-143 510.8 317 79.2
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 1.0e-142 510.4 317 80.1
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 1.0e-142 510.4 317 79.8
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 1.0e-142 510.4 317 77.0
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 1.0e-142 510.4 317 79.8
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.2e-142 509.2 317 77.3
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 3.8e-142 508.4 317 77.0
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 8.5e-142 507.3 308 78.6
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 1.1e-141 506.9 317 78.9
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 1.9e-141 506.1 317 78.9
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 2.5e-141 505.8 317 79.5
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 2.1e-140 502.7 319 78.1
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 2.7e-140 502.3 317 77.6
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 1.0e-139 500.4 356 71.1
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 4.0e-139 498.4 280 83.2
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 2.8e-137 492.3 318 76.4
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 3.8e-134 481.9 314 74.8
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 3.8e-134 481.9 290 79.0
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 6.6e-134 481.1 317 74.4
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 3.0e-131 472.2 315 73.0
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.4e-130 468.4 324 69.8
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 9.2e-128 460.7 285 80.4
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 6.6e-126 454.5 317 69.4
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 6.6e-126 454.5 317 71.9
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 7.3e-125 451.1 316 69.6
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.6e-124 449.9 284 80.6
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 3.6e-124 448.7 246 89.0
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 8.0e-124 447.6 271 79.0
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 1.5e-122 443.4 273 76.2
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 3.5e-119 432.2 317 68.5
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 6.0e-119 431.4 242 86.0
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 1.5e-117 426.8 319 68.7
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 4.3e-117 425.2 317 67.5
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.6e-116 423.3 317 65.6
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.8e-116 422.5 296 68.6
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 2.6e-114 416.0 279 75.6
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 4.1e-112 408.7 319 67.7
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 1.2e-111 407.1 292 67.8
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.3e-110 402.9 284 69.7
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.2e-106 390.6 273 69.2
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 1.0e-102 377.5 288 64.2
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 4.7e-100 368.6 279 65.2
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 7.6e-98 361.3 198 88.9
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 2.2e-97 359.8 280 63.2
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 4.9e-97 358.6 198 87.9
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 4.6e-95 352.1 276 61.2
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 6.9e-91 338.2 198 84.3
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 4.5e-90 335.5 209 76.6
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 3.9e-86 322.4 198 79.8
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 1.3e-81 307.4 276 56.2
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 1.4e-80 303.9 168 86.9
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 4.9e-73 278.9 173 81.5
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 3.0e-70 269.6 280 54.3
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.9e-70 269.2 168 76.8
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 2.6e-66 256.5 223 58.7
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.7e-65 253.8 216 59.7
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 1.3e-60 237.7 205 59.5
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 1.4e-46 191.0 202 52.5
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 8.5e-41 171.8 209 47.8
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 4.1e-35 152.9 90 82.2
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 1.4e-27 127.9 138 47.8
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 1.1e-24 118.2 161 45.3
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.2e-23 114.8 185 37.8
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 3.6e-23 113.2 185 37.3
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.8e-22 110.9 131 44.3
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 5.7e-21 105.9 212 34.4
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 9.8e-21 105.1 60 85.0
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 1.2e-18 98.2 130 47.7
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 4.5e-18 96.3 110 50.9
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 7.3e-16 89.0 50 74.0
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 2.4e-11 73.9 77 49.4
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 4.1e-11 73.2 76 50.0
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 6.2e-07 59.3 40 62.5
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 1.1e-06 58.5 34 82.4


User provided reference genes

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