Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 6.0e-103 377.5 185 100.0
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.3e-94 349.7 189 93.1
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 2.6e-82 308.9 169 90.5
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 4.4e-82 308.1 183 83.6
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 7.6e-82 307.4 183 85.8
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 8.7e-70 267.3 183 76.5
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.9e-69 266.2 182 76.4
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.9e-69 266.2 182 76.4
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 5.6e-69 264.6 183 76.0
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 9.6e-69 263.8 183 76.0
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.6e-68 263.1 184 73.9
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 1.6e-68 263.1 192 72.9
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 4.8e-68 261.5 184 72.3
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 6.2e-68 261.2 183 73.2
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 8.1e-68 260.8 154 85.7
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 1.4e-67 260.0 185 73.0
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 2.4e-67 259.2 185 75.1
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 5.3e-67 258.1 168 78.0
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 5.3e-67 258.1 172 79.1
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 9.0e-67 257.3 184 71.7
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.2e-66 256.9 187 73.3
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 1.2e-66 256.9 160 82.5
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 1.2e-66 256.9 160 82.5
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.2e-66 256.9 160 82.5
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 1.5e-66 256.5 173 75.1
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.5e-66 256.5 187 72.7
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 3.4e-66 255.4 187 72.2
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 3.4e-66 255.4 153 81.7
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 3.4e-66 255.4 181 70.2
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 4.5e-66 255.0 185 71.4
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 7.6e-66 254.2 183 70.5
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 7.6e-66 254.2 186 73.7
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 9.9e-66 253.8 185 71.4
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 9.9e-66 253.8 176 73.9
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 2.9e-65 252.3 185 73.0
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 2.9e-65 252.3 153 85.6
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 2.9e-65 252.3 153 85.6
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 3.8e-65 251.9 192 70.8
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 3.8e-65 251.9 184 72.3
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 4.9e-65 251.5 184 71.2
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 6.4e-65 251.1 154 82.5
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 8.4e-65 250.8 184 69.6
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 8.4e-65 250.8 184 69.6
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 8.4e-65 250.8 184 69.6
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 8.4e-65 250.8 184 69.6
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 8.4e-65 250.8 194 68.6
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.4e-64 250.0 152 80.9
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.4e-64 250.0 189 69.8
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.9e-64 249.6 184 71.7
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.9e-64 249.6 183 69.9
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.9e-64 249.6 183 69.9
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.9e-64 249.6 183 69.9
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 1.9e-64 249.6 156 82.7
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.4e-64 249.2 187 70.1
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 3.2e-64 248.8 162 77.8
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 4.2e-64 248.4 187 69.5
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 4.2e-64 248.4 185 70.8
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 9.3e-64 247.3 154 79.9
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 1.6e-63 246.5 187 68.4
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.6e-63 246.5 176 73.9
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 2.7e-63 245.7 183 70.5
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 2.7e-63 245.7 182 73.1
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 2.7e-63 245.7 163 74.8
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 3.5e-63 245.4 183 69.9
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 7.9e-63 244.2 155 78.7
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 2.3e-62 242.7 153 79.7
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 2.3e-62 242.7 184 69.6
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 3.0e-62 242.3 194 69.1
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 3.0e-62 242.3 183 71.6
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 3.9e-62 241.9 164 75.6
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 6.7e-62 241.1 171 73.1
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.7e-62 240.7 173 71.7
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 8.7e-62 240.7 173 71.7
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.1e-61 240.4 187 66.3
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.1e-61 240.4 183 70.5
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.1e-61 240.4 169 73.4
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.5e-61 240.0 156 77.6
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.5e-61 240.0 172 73.8
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 1.9e-61 239.6 184 67.9
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.3e-61 238.8 172 72.1
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 4.3e-61 238.4 174 71.3
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 5.6e-61 238.0 154 79.9
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 9.6e-61 237.3 174 70.7
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 9.6e-61 237.3 151 82.1
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.3e-60 236.9 156 77.6
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 1.6e-60 236.5 186 65.6
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 2.1e-60 236.1 183 69.4
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.1e-60 236.1 183 69.4
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.1e-60 236.1 183 69.4
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.8e-60 235.7 185 67.0
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 3.7e-60 235.3 183 69.9
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 4.8e-60 235.0 170 72.4
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 6.2e-60 234.6 181 69.6
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.1e-59 233.8 183 69.4
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.1e-59 233.8 183 69.4
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.4e-59 232.6 186 68.8
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 5.3e-59 231.5 190 63.7
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.5e-58 229.9 158 77.2
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 6.5e-57 224.6 172 66.9
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.1e-56 223.8 172 68.0
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.9e-56 223.0 193 64.8
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 7.1e-56 221.1 162 70.4
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.2e-55 220.3 170 69.4
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.6e-55 219.9 151 73.5
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 7.9e-55 217.6 190 63.2
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 7.9e-55 217.6 242 52.5
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.3e-54 216.1 121 86.8
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 2.3e-54 216.1 186 60.8
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 3.0e-54 215.7 175 66.3
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 3.9e-54 215.3 146 74.7
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 3.9e-54 215.3 158 69.6
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.1e-53 213.8 175 66.3
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 4.3e-53 211.8 183 63.9
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 8.2e-52 207.6 274 47.4
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.9e-49 199.1 121 79.3
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 8.5e-49 197.6 152 68.4
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 7.2e-48 194.5 153 68.0
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.2e-47 193.7 118 78.0
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.7e-47 192.6 152 65.8
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 2.7e-47 192.6 152 65.8
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 7.9e-47 191.0 159 62.9
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 3.0e-46 189.1 161 62.1
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 4.3e-45 185.3 102 90.2
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 7.4e-45 184.5 127 71.7
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.1e-43 180.6 121 72.7
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.4e-43 179.5 160 60.6
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.8e-38 163.3 132 65.2
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 3.0e-38 162.5 93 81.7
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.2e-36 156.4 149 54.4
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 8.2e-36 154.5 140 54.3
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.1e-35 154.1 150 53.3
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 1.4e-35 153.7 150 54.0
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.5e-34 150.2 81 91.4
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 4.5e-34 148.7 112 59.8
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 8.5e-33 144.4 123 56.9
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 2.5e-32 142.9 163 52.1
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 9.7e-29 131.0 91 67.0
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 3.5e-26 122.5 80 76.2
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.3e-25 120.6 67 86.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.3e-25 120.6 67 86.6
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 9.7e-21 104.4 111 56.8
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 6.5e-17 91.7 119 48.7
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 9.4e-16 87.8 79 58.2
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 1.5e-13 80.5 50 76.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 4.8e-12 75.5 137 35.0
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 2.8e-07 59.7 38 76.3
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 1.4e-06 57.4 73 53.4


User provided reference genes

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