Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62006989 Chenopodium quinoa HOM05D000780 ORTHO05D009033 2.4e-165 585.5 309 100.0
EL10Ac4g09771 Beta vulgaris HOM05D000780 ORTHO05D009033 1.1e-122 443.7 306 78.8
Ah.06g187930 Amaranthus hybridus HOM05D000780 ORTHO05D009033 1.1e-117 427.2 312 76.3
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 2.5e-114 416.0 229 96.9
Hund07171 Selenicereus undatus HOM05D000780 ORTHO05D009033 3.5e-108 395.6 310 70.6
Sc24g0002520 Simmondsia chinensis HOM05D000780 ORTHO05D009033 2.5e-98 362.8 308 65.9
Ciclev10021307m.g Citrus clementina HOM05D000780 ORTHO05D009033 9.0e-96 354.4 304 66.1
Glyma.20G221500 Glycine max HOM05D000780 ORTHO05D009033 1.5e-95 353.6 261 70.5
Phvul.L002032 Phaseolus vulgaris HOM05D000780 ORTHO05D009033 3.4e-95 352.4 261 70.5
Atru.chr2.1117 Acer truncatum HOM05D000780 ORTHO05D009033 4.5e-95 352.1 304 66.4
Gohir.D13G172200 Gossypium hirsutum HOM05D000780 ORTHO05D009033 7.6e-95 351.3 291 66.3
Gorai.013G188500 Gossypium raimondii HOM05D000780 ORTHO05D009033 7.6e-95 351.3 291 66.0
Thecc.05G266300 Theobroma cacao HOM05D000780 ORTHO05D009033 7.6e-95 351.3 277 66.8
CsaV3_1G045040 Cucumis sativus L. HOM05D000780 ORTHO05D009033 3.8e-94 349.0 290 65.2
VMungo0720G1285 Vigna mungo HOM05D000780 ORTHO05D009033 5.0e-94 348.6 304 63.8
Gohir.A13G161800 Gossypium hirsutum HOM05D000780 ORTHO05D009033 8.4e-94 347.8 291 65.3
Hma1.2p1_0130F.1_g060510 Hydrangea macrophylla HOM05D000780 ORTHO05D009033 3.2e-93 345.9 269 67.3
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 1.2e-92 344.0 303 64.0
Lj5g0019051 Lotus japonicus HOM05D000780 ORTHO05D009033 1.2e-92 344.0 310 61.9
GSVIVG01026324001 Vitis vinifera HOM05D000780 ORTHO05D009033 2.3e-91 339.7 318 62.9
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 5.1e-91 338.6 294 60.9
CSS0005756 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 2.5e-90 336.3 314 62.7
Nn1g03021 Nelumbo nucifera HOM05D000780 ORTHO05D009033 4.3e-90 335.5 274 68.6
PGR004G1412 Punica granatum HOM05D000780 ORTHO05D009033 9.7e-90 334.3 305 61.3
TWI34G1716 Tripterygium wilfordii HOM05D000780 ORTHO05D009033 1.3e-89 334.0 310 59.4
Potri.019G023700 Populus trichocarpa HOM05D000780 ORTHO05D009033 1.6e-89 333.6 301 62.8
TAR633G0111 Trochodendron aralioides HOM05D000780 ORTHO05D009033 1.6e-89 333.6 296 62.2
FvH4_6g01461 Fragaria vesca HOM05D000780 ORTHO05D009033 2.2e-89 333.2 298 62.4
Ca_09986_v3 Cicer arietinum L. HOM05D000780 ORTHO05D009033 4.8e-89 332.0 277 62.5
Actinidia06831 Actinidia chinensis HOM05D000780 ORTHO05D009033 8.2e-89 331.3 315 61.6
Eucgr.H04210 Eucalyptus grandis HOM05D000780 ORTHO05D009033 3.1e-88 329.3 260 68.8
Lalb_Chr21g0311301 Lupinus albus HOM05D000780 ORTHO05D009033 4.1e-88 328.9 299 59.9
MD12G1251900 Malus domestica HOM05D000780 ORTHO05D009033 5.3e-88 328.6 303 60.4
Medtr1g079763 Medicago truncatula HOM05D000780 ORTHO05D009033 6.9e-88 328.2 300 59.0
arahy.Tifrunner.gnm1.ann1.ZAXM00 Arachis hypogaea HOM05D000780 ORTHO05D009033 2.0e-87 326.6 315 59.7
AL7G45990 Arabidopsis lyrata HOM05D000780 ORTHO05D009033 4.5e-87 325.5 301 61.1
arahy.Tifrunner.gnm1.ann1.09X96J Arachis hypogaea HOM05D000780 ORTHO05D009033 5.9e-87 325.1 270 65.2
Carub.0007s3248 Capsella rubella HOM05D000780 ORTHO05D009033 5.9e-87 325.1 311 59.2
Sp7g05110 Schrenkiella parvula HOM05D000780 ORTHO05D009033 1.0e-86 324.3 299 60.5
BraA04t16719Z Brassica rapa HOM05D000780 ORTHO05D009033 1.3e-86 323.9 298 61.4
Manes.09G146600 Manihot esculenta HOM05D000780 ORTHO05D009033 1.3e-86 323.9 312 61.2
MSTRG.27431 Avicennia marina HOM05D000780 ORTHO05D009033 1.7e-86 323.6 274 65.3
THA.LOC104821566 Tarenaya hassleriana HOM05D000780 ORTHO05D009033 1.7e-86 323.6 308 59.4
BcaC02g09559 Brassica carinata HOM05D000780 ORTHO05D009033 2.9e-86 322.8 258 65.9
BolC4t25992H Brassica oleracea HOM05D000780 ORTHO05D009033 2.9e-86 322.8 258 65.9
C04p44170 Brassica napus HOM05D000780 ORTHO05D009033 3.8e-86 322.4 258 65.9
RcHm_v2.0_Chr3g0449091 Rosa chinensis HOM05D000780 ORTHO05D009033 3.8e-86 322.4 302 60.3
Aqoxy5G00106 Aquilegia oxysepala HOM05D000780 ORTHO05D009033 8.5e-86 321.2 303 59.7
AT5G37360 Arabidopsis thaliana HOM05D000780 ORTHO05D009033 8.5e-86 321.2 302 60.9
Thhalv10027857m.g Eutrema salsugineum HOM05D000780 ORTHO05D009033 1.4e-85 320.5 299 58.5
A04p10530 Brassica napus HOM05D000780 ORTHO05D009033 3.2e-85 319.3 259 65.3
Lsat_1_v5_gn_9_46781 Lactuca sativa HOM05D000780 ORTHO05D009033 3.2e-85 319.3 297 61.6
Nitab4.5_0003148g0030 Nicotiana tabacum HOM05D000780 ORTHO05D009033 4.2e-85 318.9 257 65.4
QL01p042200 Quercus lobata HOM05D000780 ORTHO05D009033 1.2e-84 317.4 266 66.9
Solyc04g050470.4 Solanum lycopersicum HOM05D000780 ORTHO05D009033 1.2e-84 317.4 295 59.7
Migut.F02052 Erythranthe guttata HOM05D000780 ORTHO05D009033 1.0e-83 314.3 292 61.0
CARHR215730 Cardamine hirsuta HOM05D000780 ORTHO05D009033 2.3e-83 313.2 312 58.3
MELO3C010086.2 Cucumis melo HOM05D000780 ORTHO05D009033 2.0e-82 310.1 257 65.0
MBI10_g26046_MAGBIO Magnolia biondii HOM05D000780 ORTHO05D009033 4.3e-82 308.9 258 64.3
ClCG03G011490 Citrullus lanatus HOM05D000780 ORTHO05D009033 9.7e-82 307.8 281 61.2
Aa31LG9G18020 Aethionema arabicum HOM05D000780 ORTHO05D009033 2.2e-81 306.6 306 56.9
ATR0088G058 Amborella trichopoda HOM05D000780 ORTHO05D009033 2.2e-81 306.6 251 64.9
Potri.013G050300 Populus trichocarpa HOM05D000780 ORTHO05D009033 8.2e-81 304.7 270 63.3
Rhsim05G0170400 Rhododendron simsii HOM05D000780 ORTHO05D009033 1.4e-80 303.9 290 59.7
SalBow1G6873 Salvia bowleyana HOM05D000780 ORTHO05D009033 1.8e-80 303.5 304 56.6
ECA232G3479 Erigeron canadensis HOM05D000780 ORTHO05D009033 4.1e-80 302.4 255 63.5
Nitab4.5_0000841g0080 Nicotiana tabacum HOM05D000780 ORTHO05D009033 5.3e-80 302.0 256 63.7
CANSAT54G0520 Cannabis sativa HOM05D000780 ORTHO05D009033 6.9e-80 301.6 262 62.6
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 9.1e-80 301.2 213 72.8
PSO210G3904 Papaver somniferum HOM05D000780 ORTHO05D009033 1.1e-77 294.3 325 56.3
Glyma.10G167600 Glycine max HOM05D000780 ORTHO05D009033 1.9e-77 293.5 274 62.0
DCAR_030971 Daucus carota HOM05D000780 ORTHO05D009033 1.2e-76 290.8 262 61.8
Prupe.6G353000 Prunus persica HOM05D000780 ORTHO05D009033 1.0e-75 287.7 304 55.6
SalBow1G5981 Salvia bowleyana HOM05D000780 ORTHO05D009033 3.0e-75 286.2 334 51.5
vmacro19978 Vaccinium macrocarpon HOM05D000780 ORTHO05D009033 3.9e-75 285.8 314 55.7
FAN05G0905 Fragaria x ananassa HOM05D000780 ORTHO05D001132 3.3e-74 282.7 314 54.1
FAN02G1432 Fragaria x ananassa HOM05D000780 ORTHO05D009033 5.7e-74 282.0 303 55.1
FAN14G3828 Fragaria x ananassa HOM05D000780 ORTHO05D001132 9.7e-74 281.2 314 53.8
FAN14G4937 Fragaria x ananassa HOM05D000780 ORTHO05D001132 1.3e-73 280.8 311 54.0
Zm00001eb258750 Zea mays HOM05D000780 ORTHO05D009033 4.8e-73 278.9 257 59.5
Dinv01155 Davidia involucrata HOM05D000780 ORTHO05D009033 6.3e-73 278.5 211 70.6
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 8.2e-73 278.1 338 51.5
Os02g0815400 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D009033 1.4e-72 277.3 258 59.3
unitig_37.g12284 Utricularia gibba HOM05D000780 ORTHO05D009033 4.1e-72 275.8 254 59.1
TPR.G10273 Trifolium pratense HOM05D000780 ORTHO05D009033 1.5e-69 267.3 272 57.0
Peaxi162Scf00077g00138 Petunia axillaris HOM05D000780 ORTHO05D009033 2.1e-68 263.5 223 64.6
HanXRQChr05g0145151 Helianthus annuus HOM05D000780 ORTHO05D009033 1.0e-67 261.2 252 58.7
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 1.1e-66 257.7 227 62.1
CSS0024577 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 2.6e-66 256.5 247 62.3
Sabra19G0033700 Salix brachista HOM05D000780 ORTHO05D009033 1.1e-64 251.1 305 53.4
Cpa.g.c33516 Carica papaya HOM05D000780 ORTHO05D009033 1.0e-62 244.6 188 69.7
CiPaw.07G074400 Carya illinoinensis HOM05D000780 ORTHO05D009033 2.9e-62 243.0 216 63.0
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 5.0e-62 242.3 272 53.7
Haze_04472 Corylus avellana HOM05D000780 ORTHO05D009033 4.2e-61 239.2 309 52.4
Eucgr.H04100 Eucalyptus grandis HOM05D000780 ORTHO05D009033 5.5e-53 212.2 222 58.1
Sed0013634 Sechium edule HOM05D000780 ORTHO05D009033 4.7e-52 209.1 318 44.7
AagrBONN_evm.TU.Sc2ySwM_228.3981 Anthoceros agrestis HOM05D000780 ORTHO05D009033 2.3e-51 206.8 253 47.0
Lj2A46G68 Lonicera japonica HOM05D000780 ORTHO05D009033 2.0e-47 193.7 150 71.3
SMO172G0144 Selaginella moellendorffii HOM05D000780 ORTHO05D009033 6.6e-46 188.7 210 47.6
MD12G1251000 Malus domestica HOM05D000072 ORTHO05D009033 7.3e-45 185.3 181 58.0
Pp3c18_1300 Physcomitrium patens HOM05D000780 ORTHO05D009033 1.4e-40 171.0 250 41.2
CBR_g11120 Chara braunii HOM05D000780 ORTHO05D009033 1.5e-37 161.0 221 42.1
Sopen04g021250 Solanum pennellii HOM05D000780 ORTHO05D009033 4.0e-35 152.9 135 62.2
HPP92_009056 Vanilla planifolia HOM05D001254 ORTHO05D001386 2.0e-34 150.6 137 56.9
Cc09_g03040 Coffea canephora HOM05D000780 ORTHO05D009033 7.5e-34 148.7 111 64.0
Cc09_g03030 Coffea canephora HOM05D000780 ORTHO05D009033 2.9e-33 146.7 120 68.3
MD12G1250900 Malus domestica HOM05D000780 ORTHO05D009033 6.4e-33 145.6 155 56.1
HPP92_009057 Vanilla planifolia HOM05D000780 ORTHO05D009033 6.4e-33 145.6 121 64.5
SEGI_21696 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 2.3e-30 137.1 167 47.3
PGSC0003DMG402028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 1.1e-29 134.8 120 63.3
FAN09G0636 Fragaria x ananassa HOM05D000780 ORTHO05D001132 2.1e-28 130.6 114 62.3
Eucgr.H04102 Eucalyptus grandis HOM05D000780 ORTHO05D009033 5.8e-26 122.5 212 41.5
FAN11G0130 Fragaria x ananassa HOM05D000780 ORTHO05D009033 7.5e-26 122.1 233 38.6
SEGI_05244 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 1.9e-24 117.5 120 53.3
PGSC0003DMG401028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 2.8e-20 103.6 97 57.7
CAN.G4.37 Capsicum annuum HOM05D000780 ORTHO05D009033 1.2e-18 98.2 99 56.6
FAN05G5022 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.3e-17 94.7 108 50.9
FAN18G1636 Fragaria x ananassa HOM05D000780 ORTHO05D009033 3.2e-08 63.5 79 48.1
FvH4_3g18300 Fragaria vesca HOM05D000780 ORTHO05D196851 2.1e-07 60.8 51 56.9
FAN14G1321 Fragaria x ananassa HOM05D000780 ORTHO05D009033 1.7e-06 57.8 115 38.3


User provided reference genes

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