Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 0.0e+00 1298.5 677 100.0
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 0.0e+00 1231.5 670 96.4
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 0.0e+00 1085.5 683 83.7
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 3.2e-295 1018.1 677 80.1
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 1.1e-274 949.9 678 75.4
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 3.6e-246 855.1 677 71.3
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 7.9e-246 854.0 689 69.2
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 3.3e-244 848.6 682 69.9
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 3.3e-244 848.6 679 69.2
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 4.4e-244 848.2 689 69.5
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 7.4e-244 847.4 671 69.4
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 3.7e-243 845.1 682 69.9
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 6.3e-243 844.3 683 68.7
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 1.8e-242 842.8 689 68.5
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 9.1e-242 840.5 680 68.7
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 1.2e-241 840.1 688 67.3
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 1.6e-241 839.7 683 68.8
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 7.7e-241 837.4 674 69.4
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 1.0e-240 837.0 678 68.1
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 3.8e-240 835.1 701 67.2
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 6.5e-240 834.3 680 68.8
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 1.1e-239 833.6 683 68.7
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 1.1e-239 833.6 683 68.7
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 9.4e-239 830.5 682 68.8
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 3.6e-238 828.6 669 69.4
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 4.7e-238 828.2 698 64.0
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 1.2e-236 823.5 669 69.7
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 4.4e-236 821.6 625 73.1
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 7.5e-236 820.8 682 67.9
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 1.8e-234 816.2 684 67.3
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.0e-233 812.8 648 69.4
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 5.9e-233 811.2 683 66.5
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 7.7e-233 810.8 679 68.3
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 1.0e-232 810.4 684 67.5
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 5.5e-231 804.7 678 66.5
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 7.2e-231 804.3 680 66.8
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.7e-227 792.0 699 64.8
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.1e-226 790.4 678 66.5
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 3.1e-226 788.9 678 66.8
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 9.1e-226 787.3 674 66.8
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 2.7e-225 785.8 801 59.2
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 2.9e-224 782.3 646 68.1
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.5e-223 780.0 685 65.5
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 5.5e-223 778.1 740 61.6
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 9.5e-223 777.3 687 66.1
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 9.5e-223 777.3 682 67.0
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 1.6e-222 776.5 678 64.9
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 4.7e-222 775.0 610 69.8
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.3e-219 766.9 679 65.7
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 1.7e-219 766.5 685 66.3
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 2.4e-218 762.7 680 65.6
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 2.0e-217 759.6 679 63.3
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 2.7e-217 759.2 626 69.3
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.3e-216 756.9 681 63.6
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 1.3e-216 756.9 651 66.1
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.2e-214 750.4 673 65.2
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 2.1e-214 749.6 666 64.3
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.2e-212 743.8 647 65.4
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 7.5e-212 741.1 664 63.7
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 1.7e-211 740.0 686 59.6
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 4.1e-210 735.3 688 62.8
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 4.6e-209 731.9 652 64.1
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 1.3e-208 730.3 686 62.8
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 5.6e-207 724.9 632 65.8
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 2.1e-206 723.0 680 63.7
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 2.3e-205 719.5 564 72.5
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 2.6e-204 716.1 562 72.8
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 1.3e-203 713.8 677 63.2
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.7e-203 712.2 612 67.2
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 1.9e-202 709.9 676 62.9
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 3.5e-201 705.7 678 62.2
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 7.8e-201 704.5 690 61.7
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 1.7e-200 703.4 677 62.0
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 1.7e-200 703.4 677 62.0
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 5.0e-200 701.8 680 62.8
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 7.3e-199 698.0 676 61.2
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 1.6e-198 696.8 655 62.1
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 2.8e-198 696.0 676 61.1
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 2.8e-198 696.0 676 61.1
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 1.4e-197 693.7 674 62.2
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 2.3e-197 693.0 543 71.8
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 3.1e-197 692.6 689 61.4
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 3.1e-197 692.6 674 61.3
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 3.1e-197 692.6 674 61.3
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 2.0e-196 689.9 745 54.2
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 5.4e-194 681.8 700 59.7
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 7.8e-193 677.9 685 58.4
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 3.3e-191 672.5 527 71.7
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 8.1e-190 667.9 455 80.7
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 1.7e-184 650.2 496 73.0
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 5.1e-184 648.7 641 61.3
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 2.1e-182 643.3 660 59.4
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 2.8e-182 642.9 680 56.6
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 3.6e-182 642.5 677 53.6
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 5.8e-180 635.2 678 55.2
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 6.6e-176 621.7 612 56.7
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 1.9e-175 620.2 674 53.3
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 1.2e-172 610.9 508 68.5
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 5.4e-170 602.1 678 55.0
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 1.2e-169 600.9 701 54.8
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 1.7e-163 580.5 502 67.1
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 1.1e-162 577.8 678 53.8
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.0e-160 569.7 625 53.6
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 1.0e-155 554.7 468 63.5
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 2.9e-155 553.1 667 54.6
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 4.2e-154 549.3 728 47.7
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.2e-150 537.0 406 74.4
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 1.2e-148 531.2 664 51.1
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 3.8e-139 499.6 454 65.6
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.0e-136 491.5 581 49.4
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 1.4e-133 481.1 761 42.0
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 3.7e-126 456.4 585 47.7
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 1.2e-113 414.8 685 42.0
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 8.0e-113 412.1 554 45.7
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 5.7e-103 379.4 317 72.2
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 3.3e-98 363.6 583 43.9
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 6.0e-92 342.8 290 74.8
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 1.0e-83 315.5 226 80.5
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 4.9e-78 296.6 316 60.4
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 8.6e-75 285.8 283 59.4
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 4.3e-74 283.5 297 55.6
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 3.5e-68 263.8 180 86.7
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 7.8e-60 236.1 299 55.9
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 8.1e-57 226.1 332 40.4
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 5.3e-56 223.4 320 42.8
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.9e-53 214.9 302 50.0
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.3e-51 208.8 192 75.0
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 6.9e-48 196.4 141 75.9
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.2e-45 187.2 202 50.0
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.2e-44 185.7 290 37.9
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 3.3e-42 177.6 103 93.2
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 1.5e-34 152.1 81 85.2
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 9.7e-34 149.4 210 42.4
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 2.0e-26 125.2 168 38.1
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.8e-24 118.6 89 77.5
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.0e-23 115.2 246 35.0
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 3.6e-20 104.4 59 81.4
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 6.7e-19 100.1 326 26.7
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 5.3e-16 90.5 91 45.1
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 5.3e-16 90.5 91 45.1
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 7.0e-16 90.1 63 65.1
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 1.2e-12 79.3 51 78.4
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 3.6e-12 77.8 103 38.8
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 5.2e-11 73.9 108 46.3
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 5.7e-10 70.5 123 40.7
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 2.8e-09 68.2 53 56.6
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 1.4e-08 65.9 53 56.6
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 9.1e-08 63.2 175 26.9
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 3.5e-07 61.2 105 30.5
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 1.0e-06 59.7 36 86.1
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.3e-06 59.3 32 90.6
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.2e-06 58.5 34 88.2
SHI16674 Sapria himalayana HOM05D004640 ORTHO05D005489 3.8e-06 57.8 35 71.4


User provided reference genes

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