Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 1.6e-135 486.1 248 100.0
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 1.9e-120 436.0 249 91.2
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 1.7e-84 316.6 250 68.4
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 1.4e-59 233.8 224 57.6
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 9.6e-48 194.5 248 47.6
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 9.6e-48 194.5 248 47.6
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 2.2e-36 156.8 199 45.7
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 1.9e-35 153.7 220 47.7
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 3.2e-35 152.9 198 47.5
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 6.0e-34 148.7 199 43.7
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 7.9e-34 148.3 231 43.7
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 1.1e-32 144.4 210 47.6
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 1.5e-32 144.1 195 45.1
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 2.5e-32 143.3 196 44.9
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 3.3e-32 142.9 197 43.1
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 3.3e-32 142.9 205 47.3
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 7.4e-32 141.7 197 44.7
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 9.6e-32 141.4 191 45.0
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 2.8e-31 139.8 210 44.3
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 2.4e-30 136.7 196 43.9
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 2.4e-30 136.7 197 45.2
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 5.3e-30 135.6 199 46.2
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 3.4e-29 132.9 211 42.7
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 5.8e-29 132.1 211 43.6
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 5.8e-29 132.1 204 44.1
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 1.0e-28 131.3 195 43.1
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 1.3e-28 131.0 195 44.1
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 2.2e-28 130.2 189 43.4
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 2.2e-28 130.2 195 44.6
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 2.2e-28 130.2 194 44.3
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 2.2e-28 130.2 239 38.9
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 2.9e-28 129.8 238 39.1
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 4.9e-28 129.0 201 42.8
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 6.5e-28 128.6 254 38.2
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 1.4e-27 127.5 242 38.8
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 1.9e-27 127.1 195 43.1
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 2.5e-27 126.7 215 40.5
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 3.2e-27 126.3 198 38.9
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 4.2e-27 125.9 234 36.8
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 4.2e-27 125.9 215 40.0
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 5.5e-27 125.6 201 38.3
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 7.1e-27 125.2 196 43.4
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 7.1e-27 125.2 193 41.5
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 1.6e-26 124.0 218 43.6
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 3.5e-26 122.9 196 43.4
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 4.6e-26 122.5 219 40.2
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 4.6e-26 122.5 198 43.4
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 7.9e-26 121.7 235 39.1
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 7.9e-26 121.7 196 40.3
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 1.0e-25 121.3 233 39.1
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 2.3e-25 120.2 197 43.1
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 3.9e-25 119.4 147 49.0
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 5.1e-25 119.0 196 42.3
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 1.1e-24 117.9 242 37.6
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 3.3e-24 116.3 219 39.7
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 3.3e-24 116.3 201 43.8
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 3.7e-23 112.8 204 41.2
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 6.9e-22 108.6 220 36.8
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 9.0e-22 108.2 192 41.7
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.3e-20 104.4 180 36.7
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 2.9e-20 103.2 203 38.4
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 3.8e-20 102.8 209 36.8
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 5.0e-20 102.4 239 33.9
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 8.5e-20 101.7 191 35.6
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 1.1e-19 101.3 196 35.2
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 1.4e-19 100.9 194 37.6
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 1.4e-19 100.9 202 37.6
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 1.4e-19 100.9 197 38.1
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 9.4e-19 98.2 197 37.6
SGA_v2.0_scaffold240G44057 Striga asiatica HOM05D007287 ORTHO05D008965 7.9e-18 95.1 144 44.4
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.8e-17 94.0 129 44.2
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 1.8e-17 94.0 159 39.0
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 4.3e-16 89.4 207 33.8
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 4.3e-16 89.4 204 34.8
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 2.8e-15 86.7 154 35.7
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 3.7e-15 86.3 207 34.3
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 3.1e-14 83.2 208 31.7
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 3.1e-14 83.2 194 34.5
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 9.1e-14 81.6 132 40.2
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 2.0e-13 80.5 152 42.1
Hund31494 Selenicereus undatus HOM05D052263 ORTHO05D050917 3.4e-13 79.7 125 41.6
Hund31495 Selenicereus undatus HOM05D052263 ORTHO05D050917 3.4e-13 79.7 125 41.6
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 5.9e-13 79.0 172 39.0
Medtr8g005070 Medicago truncatula HOM05D007287 ORTHO05D008965 5.9e-13 79.0 202 34.2
Aqoxy1G03140 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 7.7e-13 78.6 150 35.3
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 1.0e-12 78.2 205 32.7
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 2.2e-12 77.0 176 32.4
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 3.8e-12 76.3 171 33.3
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 5.0e-12 75.9 146 38.4
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 6.5e-12 75.5 174 35.1
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 6.5e-12 75.5 140 33.6
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.4e-11 74.3 115 41.7
DCAR_011429 Daucus carota HOM05D054201 ORTHO05D008965 1.2e-10 71.2 234 32.1
VMungo0464G2164 Vigna mungo HOM05D007287 ORTHO05D008965 3.6e-10 69.7 131 42.0
Os12g0119350 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 4.7e-10 69.3 140 33.6
ATR1127G180 Amborella trichopoda HOM05D007287 ORTHO05D008965 7.9e-10 68.6 252 31.3
DCAR_010225 Daucus carota HOM05D054201 ORTHO05D008965 1.0e-09 68.2 200 32.0
Actinidia32578 Actinidia chinensis HOM05D007287 ORTHO05D008965 1.4e-09 67.8 86 44.2
Eucgr.A00853 Eucalyptus grandis HOM05D007287 ORTHO05D008965 2.0e-08 63.9 120 35.0
ECA247G1060 Erigeron canadensis HOM05D051946 ORTHO05D008965 5.7e-08 62.4 138 31.9
HanXRQChr10g0286721 Helianthus annuus HOM05D007287 ORTHO05D008965 5.7e-08 62.4 174 33.9
Gohir.A12G000800 Gossypium hirsutum HOM05D007287 ORTHO05D008965 7.4e-08 62.0 116 37.1
COL.COLO4_12535 Corchorus olitorius HOM05D007287 ORTHO05D008965 3.7e-07 59.7 150 31.3
HPP92_018079 Vanilla planifolia HOM05D007287 ORTHO05D008965 3.7e-07 59.7 139 36.7
Lalb_Chr13g0290321 Lupinus albus HOM05D007287 ORTHO05D008965 2.4e-06 57.0 248 29.0


User provided reference genes

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