Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.4e-50 202.6 102 100.0
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.5e-26 122.9 65 95.4
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 8.9e-16 87.0 60 73.3
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 3.4e-15 85.1 60 75.0
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.0e-12 75.9 60 63.3
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 1.3e-11 73.2 63 61.9
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 3.9e-11 71.6 62 61.3
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 5.0e-11 71.2 59 61.0
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 5.0e-11 71.2 56 66.1
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 6.6e-11 70.9 59 61.0
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 6.6e-11 70.9 58 62.1
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 8.6e-11 70.5 54 63.0
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 1.5e-10 69.7 77 50.6
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 1.9e-10 69.3 60 65.0
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.9e-10 69.3 54 63.0
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.9e-10 69.3 59 59.3
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.9e-10 69.3 54 63.0
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.5e-10 68.9 54 63.0
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 2.5e-10 68.9 61 60.7
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 4.3e-10 68.2 65 56.9
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 5.6e-10 67.8 56 62.5
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 5.6e-10 67.8 62 56.5
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 7.3e-10 67.4 61 62.3
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 7.3e-10 67.4 60 58.3
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 7.3e-10 67.4 59 59.3
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 9.5e-10 67.0 64 54.7
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 9.5e-10 67.0 41 73.2
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 1.2e-09 66.6 43 72.1
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 1.2e-09 66.6 52 65.4
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.6e-09 66.2 89 46.1
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 3.6e-09 65.1 41 78.0
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.1e-08 63.5 73 54.8
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.1e-08 63.5 73 54.8
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.4e-08 63.2 60 53.3
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.4e-08 63.2 47 68.1
COL.COLO4_03427 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.8e-08 62.8 91 45.1
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 2.3e-08 62.4 57 56.1
Cfa016383 Carpinus fangiana HOM05D021618 ORTHO05D004480 3.1e-08 62.0 54 59.3
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 3.1e-08 62.0 58 60.3
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.2e-08 61.2 73 53.4
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 6.8e-08 60.8 47 59.6
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.2e-07 60.1 52 55.8
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 1.2e-07 60.1 63 55.6
Haze_00874 Corylus avellana HOM05D021618 ORTHO05D004480 1.5e-07 59.7 54 57.4
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 2.0e-07 59.3 40 65.0
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.0e-07 59.3 40 65.0
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.0e-07 59.3 40 65.0
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 2.0e-07 59.3 63 50.8
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 3.4e-07 58.5 60 58.3
Haze_00184 Corylus avellana HOM05D021618 ORTHO05D004480 5.8e-07 57.8 54 55.6
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 5.8e-07 57.8 57 52.6
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 7.5e-07 57.4 62 58.1
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 7.5e-07 57.4 54 55.6
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 7.5e-07 57.4 56 51.8
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 9.8e-07 57.0 74 43.2
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.3e-06 56.6 53 58.5
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.3e-06 56.6 46 60.9
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 1.7e-06 56.2 28 92.9
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 1.7e-06 56.2 62 50.0
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 2.9e-06 55.5 28 89.3
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 2.9e-06 55.5 28 89.3
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 2.9e-06 55.5 41 68.3
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 2.9e-06 55.5 41 68.3
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 2.9e-06 55.5 32 81.2
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 2.9e-06 55.5 28 89.3
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 3.7e-06 55.1 38 68.4
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 3.7e-06 55.1 38 68.4
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 3.7e-06 55.1 38 68.4
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 3.7e-06 55.1 58 51.7
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 3.7e-06 55.1 60 56.7
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 4.9e-06 54.7 28 85.7
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 4.9e-06 54.7 60 46.7
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 6.4e-06 54.3 62 50.0
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 6.4e-06 54.3 28 85.7
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 6.4e-06 54.3 28 85.7
Os06g0530200 Oryza sativa ssp. japonica HOM05D004051 ORTHO05D004480 6.4e-06 54.3 69 44.9


User provided reference genes

Program Settings