Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 1.7e-76 289.3 145 100.0
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 3.2e-75 285.0 145 98.6
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 3.2e-59 231.9 145 80.7
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.6e-47 193.0 145 66.2
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 3.6e-47 191.8 145 65.5
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 1.1e-46 190.3 207 52.2
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 1.3e-36 156.8 101 74.3
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 3.5e-34 148.7 100 67.0
BcaC02g11514 Brassica carinata HOM05D007099 ORTHO05D009081 4.6e-34 148.3 130 56.9
C04p14510 Brassica napus HOM05D007099 ORTHO05D009081 4.6e-34 148.3 130 56.9
BolC4t23034H Brassica oleracea HOM05D007099 ORTHO05D009081 4.6e-34 148.3 130 56.9
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 6.0e-34 147.9 113 68.1
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 7.9e-34 147.5 101 71.3
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 1.3e-33 146.7 100 69.0
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 1.8e-33 146.4 101 72.3
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 2.3e-33 146.0 100 70.0
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 3.0e-33 145.6 108 63.9
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 3.9e-33 145.2 99 69.7
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 5.1e-33 144.8 99 69.7
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 5.1e-33 144.8 101 71.3
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 5.1e-33 144.8 101 69.3
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 5.1e-33 144.8 98 69.4
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 5.1e-33 144.8 96 72.9
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 5.1e-33 144.8 96 72.9
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 6.7e-33 144.4 100 69.0
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 6.7e-33 144.4 99 69.7
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 6.7e-33 144.4 99 68.7
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 6.7e-33 144.4 99 68.7
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 6.7e-33 144.4 99 68.7
BcaB02g09535 Brassica carinata HOM05D007099 ORTHO05D009081 8.7e-33 144.1 104 66.3
BcaB06g28779 Brassica carinata HOM05D007099 ORTHO05D009081 8.7e-33 144.1 104 66.3
A04p26440 Brassica napus HOM05D007099 ORTHO05D009081 8.7e-33 144.1 104 66.3
A05p11160 Brassica napus HOM05D007099 ORTHO05D009081 8.7e-33 144.1 104 66.3
C04p63850 Brassica napus HOM05D007099 ORTHO05D009081 8.7e-33 144.1 104 66.3
BolC4t27852H Brassica oleracea HOM05D007099 ORTHO05D009081 8.7e-33 144.1 104 66.3
BraA04t18148Z Brassica rapa HOM05D007099 ORTHO05D009081 8.7e-33 144.1 104 66.3
BraA05t20062Z Brassica rapa HOM05D007099 ORTHO05D009081 8.7e-33 144.1 104 66.3
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 8.7e-33 144.1 97 74.2
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 1.1e-32 143.7 99 70.7
Thhalv10017324m.g Eutrema salsugineum HOM05D007099 ORTHO05D009081 1.5e-32 143.3 108 63.9
AL4G30490 Arabidopsis lyrata HOM05D007099 ORTHO05D009081 1.9e-32 142.9 104 66.3
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 1.9e-32 142.9 97 72.2
Sp4g16780 Schrenkiella parvula HOM05D007099 ORTHO05D009081 1.9e-32 142.9 104 65.4
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 2.5e-32 142.5 97 73.2
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 2.5e-32 142.5 97 73.2
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 2.5e-32 142.5 97 73.2
CARHR128610 Cardamine hirsuta HOM05D007099 ORTHO05D009081 3.3e-32 142.1 100 69.0
AT2G34520 Arabidopsis thaliana HOM05D007099 ORTHO05D009081 4.3e-32 141.7 104 66.3
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 5.6e-32 141.4 99 68.7
Carub.0004s1619 Capsella rubella HOM05D007099 ORTHO05D009081 7.4e-32 141.0 104 65.4
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 9.6e-32 140.6 99 68.7
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 1.3e-31 140.2 101 67.3
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 1.3e-31 140.2 101 67.3
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 1.3e-31 140.2 101 67.3
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 2.1e-31 139.4 99 67.7
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 2.1e-31 139.4 101 67.3
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 2.8e-31 139.0 99 68.7
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 4.8e-31 138.3 98 67.3
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 4.8e-31 138.3 98 67.3
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 4.8e-31 138.3 98 68.4
QL10p027581 Quercus lobata HOM05D007099 ORTHO05D009081 6.2e-31 137.9 98 67.3
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 6.2e-31 137.9 99 67.7
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 6.2e-31 137.9 101 66.3
Aa31LG1G28210 Aethionema arabicum HOM05D007099 ORTHO05D009081 8.1e-31 137.5 112 60.7
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 8.1e-31 137.5 99 66.7
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 1.4e-30 136.7 99 66.7
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 1.8e-30 136.3 98 66.3
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 1.8e-30 136.3 97 69.1
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 3.1e-30 135.6 99 66.7
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 3.1e-30 135.6 101 65.3
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 5.3e-30 134.8 101 66.3
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 5.3e-30 134.8 101 66.3
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 6.9e-30 134.4 99 65.7
DCAR_014524 Daucus carota HOM05D007099 ORTHO05D009081 1.2e-29 133.7 144 50.7
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 2.0e-29 132.9 99 63.6
BcaB02g09534 Brassica carinata HOM05D007099 ORTHO05D009081 2.6e-29 132.5 119 56.3
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 4.5e-29 131.7 99 61.6
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 2.2e-28 129.4 91 69.2
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 3.8e-28 128.6 99 63.6
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 6.4e-28 127.9 89 71.9
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 6.4e-28 127.9 87 71.3
FAN12G2091 Fragaria x ananassa HOM05D007099 ORTHO05D009081 4.2e-27 125.2 91 64.8
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 2.7e-26 122.5 99 61.6
PSO541G4216 Papaver somniferum HOM05D007099 ORTHO05D009081 3.5e-26 122.1 99 59.6
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 4.6e-26 121.7 90 64.4
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 7.9e-26 120.9 83 69.9
PSO675G8234 Papaver somniferum HOM05D007099 ORTHO05D009081 7.9e-26 120.9 99 58.6
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 1.3e-25 120.2 99 58.6
PSO675G5170 Papaver somniferum HOM05D007099 ORTHO05D009081 5.6e-24 114.8 99 58.6
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 4.8e-23 111.7 94 59.6
FvH4_3g30490 Fragaria vesca HOM05D007099 ORTHO05D009081 4.0e-22 108.6 82 63.4
FAN11G0918 Fragaria x ananassa HOM05D007099 ORTHO05D009081 4.0e-22 108.6 82 63.4
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 4.2e-19 98.6 75 64.0
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 9.3e-19 97.4 99 49.5
Gohir.A01G126800 Gossypium hirsutum HOM05D007099 ORTHO05D009081 6.0e-18 94.7 62 71.0
Solyc00g500363.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 6.0e-18 94.7 71 62.0
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 1.0e-17 94.0 63 71.4
ClCG01G010070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.3e-17 93.6 71 63.4
Lalb_Chr11g0070131 Lupinus albus HOM05D007099 ORTHO05D009081 3.9e-17 92.0 63 69.8
Lalb_Chr11g0070211 Lupinus albus HOM05D007099 ORTHO05D009081 3.9e-17 92.0 63 69.8
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 5.1e-17 91.7 65 67.7
arahy.Tifrunner.gnm1.ann1.HLYH4Q Arachis hypogaea HOM05D007099 ORTHO05D009081 4.3e-16 88.6 63 66.7
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.2e-15 86.3 61 67.2
Cre17.g726300 Chlamydomonas reinhardtii HOM05D007099 ORTHO05D009081 1.4e-14 83.6 102 43.1
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.4e-14 83.6 63 66.7
Solyc09g050030.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 2.4e-14 82.8 63 61.9
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 5.3e-14 81.6 60 63.3
Rhsim10G0009600 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.0e-12 77.4 105 42.9
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 1.4e-11 73.6 55 61.8
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 3.2e-11 72.4 48 72.9
Pp3c2_23460 Physcomitrium patens HOM05D007099 ORTHO05D009081 7.9e-10 67.8 53 58.5
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 3.9e-09 65.5 91 45.1
Nitab4.5_0000033g0070 Nicotiana tabacum HOM05D007099 ORTHO05D009081 2.0e-08 63.2 51 60.8
Gohir.D09G055500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 3.3e-08 62.4 101 41.6
Phvul.011G109300 Phaseolus vulgaris HOM05D007099 ORTHO05D009081 9.7e-08 60.8 71 47.9
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 2.8e-07 59.3 91 44.0
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 3.7e-07 58.9 91 44.0
Peaxi162Scf44104g00001 Petunia axillaris HOM05D007099 ORTHO05D009081 4.8e-07 58.5 36 69.4
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 6.3e-07 58.2 91 44.0
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 6.3e-07 58.2 91 44.0
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 6.3e-07 58.2 91 44.0
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 6.3e-07 58.2 91 44.0
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 6.3e-07 58.2 91 44.0
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 6.3e-07 58.2 91 44.0
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 6.3e-07 58.2 91 44.0
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 6.3e-07 58.2 91 44.0
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 6.3e-07 58.2 91 44.0
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 6.3e-07 58.2 91 44.0
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 8.2e-07 57.8 91 42.9
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 8.2e-07 57.8 91 42.9
Lalb_Chr00c21g0405241 Lupinus albus HOM05D007099 ORTHO05D009081 1.1e-06 57.4 43 60.5
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 1.8e-06 56.6 91 42.9
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 1.8e-06 56.6 91 42.9
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.8e-06 56.6 91 42.9
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 1.8e-06 56.6 91 42.9
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 1.8e-06 56.6 90 41.1
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 2.4e-06 56.2 91 41.8
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 2.4e-06 56.2 91 41.8
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 2.4e-06 56.2 91 41.8
GSVIVG01018700001 Vitis vinifera HOM05D007099 ORTHO05D009081 2.4e-06 56.2 42 61.9
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 3.1e-06 55.8 91 42.9
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.1e-06 55.8 91 41.8
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.1e-06 55.8 91 41.8
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.1e-06 55.8 91 41.8
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 3.1e-06 55.8 91 41.8
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 3.1e-06 55.8 92 39.1
BcaC04g20699 Brassica carinata HOM05D000388 ORTHO05D009843 4.1e-06 55.5 91 42.9
Gohir.A03G019500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 4.1e-06 55.5 91 42.9
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 5.3e-06 55.1 93 41.9
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 5.3e-06 55.1 91 42.9
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 6.9e-06 54.7 91 41.8
arahy.Tifrunner.gnm1.ann1.6B1C4L Arachis hypogaea HOM05D000388 ORTHO05D009843 9.1e-06 54.3 88 40.9
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 9.1e-06 54.3 92 40.2


User provided reference genes

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