Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62006063 Chenopodium quinoa HOM05D003086 ORTHO05D003347 7.2e-37 156.8 80 100.0
AUR62035564 Chenopodium quinoa HOM05D003086 ORTHO05D003347 7.2e-37 156.8 80 100.0
EL10Ac3g05245 Beta vulgaris HOM05D003086 ORTHO05D003347 2.5e-29 131.7 80 90.0
Ah.13g070480 Amaranthus hybridus HOM05D003086 ORTHO05D003347 2.7e-28 128.3 79 83.5
Ah.07g205310 Amaranthus hybridus HOM05D003086 ORTHO05D003347 4.5e-23 110.9 68 85.3
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 6.7e-11 70.5 62 59.7
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 6.7e-11 70.5 62 59.7
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.0e-10 68.9 62 58.1
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.0e-10 68.9 62 59.7
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.3e-10 68.2 62 58.1
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 7.5e-10 67.0 50 66.0
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.7e-09 65.9 52 63.5
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 1.1e-08 63.2 81 48.1
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 1.1e-08 63.2 69 49.3
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.4e-08 62.8 67 52.2
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.4e-08 62.8 54 61.1
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.4e-08 62.8 81 43.2
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 1.4e-08 62.8 81 49.4
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 1.4e-08 62.8 81 49.4
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.4e-08 62.8 81 49.4
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 1.8e-08 62.4 50 56.0
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 3.1e-08 61.6 51 58.8
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 3.1e-08 61.6 78 42.3
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 3.1e-08 61.6 47 63.8
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 3.1e-08 61.6 60 56.7
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 3.1e-08 61.6 61 52.5
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 4.1e-08 61.2 79 49.4
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 4.1e-08 61.2 45 68.9
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 5.3e-08 60.8 57 59.6
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 5.3e-08 60.8 69 50.7
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 5.3e-08 60.8 61 52.5
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 5.3e-08 60.8 42 71.4
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 7.0e-08 60.5 81 50.6
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 7.0e-08 60.5 57 52.6
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 9.1e-08 60.1 52 57.7
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 9.1e-08 60.1 80 46.2
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.6e-07 59.3 82 46.3
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 1.6e-07 59.3 47 68.1
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 2.0e-07 58.9 60 56.7
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 2.7e-07 58.5 72 51.4
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 2.7e-07 58.5 52 55.8
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.7e-07 58.5 51 58.8
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 3.5e-07 58.2 81 45.7
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 3.5e-07 58.2 84 48.8
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 4.5e-07 57.8 81 46.9
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 4.5e-07 57.8 48 64.6
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 5.9e-07 57.4 46 67.4
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 5.9e-07 57.4 54 53.7
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 5.9e-07 57.4 48 60.4
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 5.9e-07 57.4 48 64.6
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 5.9e-07 57.4 70 50.0
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 5.9e-07 57.4 57 56.1
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 5.9e-07 57.4 43 65.1
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 5.9e-07 57.4 42 64.3
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 7.7e-07 57.0 80 45.0
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 1.0e-06 56.6 45 57.8
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.0e-06 56.6 65 50.8
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 1.0e-06 56.6 44 68.2
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 1.3e-06 56.2 51 54.9
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 1.3e-06 56.2 51 54.9
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.3e-06 56.2 52 57.7
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.3e-06 56.2 53 54.7
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.3e-06 56.2 80 46.2
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 1.3e-06 56.2 45 60.0
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 1.7e-06 55.8 56 53.6
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 1.7e-06 55.8 47 59.6
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 2.2e-06 55.5 49 59.2
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.2e-06 55.5 90 42.2
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.2e-06 55.5 79 44.3
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 2.2e-06 55.5 50 58.0
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 2.9e-06 55.1 51 54.9
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 2.9e-06 55.1 81 42.0
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.9e-06 55.1 80 46.2
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 3.8e-06 54.7 50 54.0
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 3.8e-06 54.7 38 76.3
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 3.8e-06 54.7 42 69.0
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 3.8e-06 54.7 47 57.4
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 5.0e-06 54.3 83 44.6
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 5.0e-06 54.3 44 63.6
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 5.0e-06 54.3 71 46.5
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 6.5e-06 53.9 52 51.9
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 8.5e-06 53.5 51 52.9
FvH4_7g16950 Fragaria vesca HOM05D014299 ORTHO05D017012 8.5e-06 53.5 75 44.0
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 8.5e-06 53.5 50 58.0


User provided reference genes

Program Settings