Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 0.0e+00 1589.7 865 100.0
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 0.0e+00 1394.4 815 95.1
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 0.0e+00 1138.3 829 78.4
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 9.1e-287 990.3 833 68.3
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 8.0e-283 977.2 827 69.4
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 7.0e-263 911.0 814 64.5
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 4.1e-239 832.0 838 60.6
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 8.1e-235 817.8 844 58.4
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 3.7e-232 808.9 838 56.0
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 2.4e-231 806.2 844 57.9
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 7.3e-228 794.7 809 58.5
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 3.8e-224 782.3 807 59.0
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 9.3e-223 777.7 842 57.0
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 5.6e-220 768.5 863 54.8
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 2.8e-219 766.1 841 53.6
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 6.2e-219 765.0 841 55.3
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 8.1e-219 764.6 835 55.1
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 5.8e-217 758.4 835 56.0
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 8.4e-216 754.6 837 55.7
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.9e-215 753.4 849 55.0
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 4.6e-214 748.8 813 55.2
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 4.6e-214 748.8 832 55.8
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 3.0e-213 746.1 884 52.4
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 5.1e-213 745.3 831 55.2
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 3.3e-212 742.7 861 54.2
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 1.3e-211 740.7 814 55.8
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 8.1e-211 738.0 836 55.0
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 2.6e-209 733.0 806 56.3
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 4.5e-209 732.3 837 55.4
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 3.8e-208 729.2 811 55.9
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.8e-208 729.2 863 53.3
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 1.0e-205 721.1 859 53.0
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 1.8e-205 720.3 863 54.8
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 6.7e-205 718.4 858 54.5
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 1.9e-204 716.8 811 54.9
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.9e-204 716.8 861 52.7
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 4.3e-204 715.7 864 52.0
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 6.2e-203 711.8 737 58.6
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 1.4e-202 710.7 849 53.1
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 1.8e-202 710.3 811 54.1
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 6.9e-202 708.4 851 53.8
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 6.9e-202 708.4 837 54.6
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 2.0e-201 706.8 846 52.7
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 7.6e-201 704.9 858 50.6
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 1.7e-200 703.7 837 54.5
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 1.7e-200 703.7 804 53.7
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 4.9e-200 702.2 765 55.6
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.2e-198 697.6 855 51.6
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 2.7e-198 696.4 847 51.0
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.0e-197 694.5 854 50.8
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 1.3e-197 694.1 854 53.0
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 2.5e-196 689.9 837 53.8
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 2.5e-196 689.9 846 49.9
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 7.4e-196 688.3 846 54.0
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 1.1e-194 684.5 849 49.8
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 1.4e-194 684.1 840 53.2
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 6.9e-194 681.8 859 52.4
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 3.5e-190 669.5 842 50.7
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 4.6e-190 669.1 805 51.8
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.1e-188 664.5 824 54.0
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 1.9e-188 663.7 842 48.7
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 4.3e-188 662.5 735 55.8
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 4.3e-188 662.5 785 53.6
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.3e-187 658.7 824 53.9
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 7.7e-185 651.7 873 49.4
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 1.3e-184 651.0 860 49.2
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 6.5e-184 648.7 828 52.8
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 2.5e-183 646.7 828 50.7
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.2e-183 646.4 863 51.9
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 1.2e-182 644.4 844 49.6
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 4.3e-180 636.0 700 56.4
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 1.4e-178 630.9 881 49.8
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 2.4e-178 630.2 870 49.7
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 9.1e-178 628.2 812 50.7
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 5.0e-176 622.5 667 57.7
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 7.2e-175 618.6 880 47.8
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 9.4e-175 618.2 813 49.6
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 3.0e-173 613.2 854 47.3
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 3.0e-173 613.2 836 51.1
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 9.7e-172 608.2 830 52.2
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.2e-171 607.1 831 52.0
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 2.4e-170 603.6 834 48.8
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.6e-169 600.1 799 51.4
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.0e-168 598.2 829 51.5
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.8e-168 596.3 815 47.9
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 1.9e-167 594.0 773 51.4
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 4.2e-167 592.8 849 49.5
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 1.2e-166 591.3 830 49.8
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 2.3e-165 587.0 829 46.8
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 4.4e-164 582.8 822 47.4
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 9.1e-162 575.1 839 47.0
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 3.5e-161 573.2 820 49.5
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.5e-159 567.8 815 47.9
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 4.7e-158 562.8 667 52.5
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 1.4e-157 561.2 823 46.7
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 2.8e-155 553.5 686 51.0
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 2.4e-154 550.4 770 46.9
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 4.1e-154 549.7 820 46.8
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 9.1e-154 548.5 825 46.4
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 5.9e-153 545.8 816 46.9
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 8.5e-152 542.0 809 45.7
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 1.1e-151 541.6 814 47.1
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 2.3e-149 533.9 619 52.7
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.7e-148 529.3 824 44.2
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.1e-146 525.0 814 46.4
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 9.1e-146 521.9 621 51.2
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 1.5e-143 514.6 779 45.3
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 6.8e-141 505.8 746 48.0
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 2.4e-138 497.3 870 43.7
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 1.8e-133 481.1 812 43.1
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 6.8e-133 479.2 812 42.6
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 3.2e-130 470.3 812 44.1
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 5.4e-130 469.5 808 43.2
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 2.3e-128 464.2 748 47.1
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 3.0e-128 463.8 762 45.7
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 8.1e-126 455.7 744 46.0
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 2.3e-125 454.1 773 42.3
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 5.8e-124 449.5 754 45.1
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 7.5e-124 449.1 752 46.0
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 9.2e-122 442.2 826 40.6
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 2.7e-121 440.7 834 39.6
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 1.3e-120 438.3 816 40.0
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 1.1e-117 428.7 800 43.2
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 1.9e-114 417.9 746 44.8
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 3.6e-110 403.7 814 38.3
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 2.2e-107 394.4 744 42.9
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 3.0e-104 384.0 728 41.3
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 1.9e-103 381.3 738 40.5
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 7.3e-103 379.4 729 41.6
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 4.0e-101 373.6 747 41.9
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 1.2e-100 372.1 728 40.9
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 1.3e-99 368.6 731 39.9
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 2.8e-94 350.9 476 46.6
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 2.0e-92 344.7 737 41.2
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 2.3e-88 331.3 413 51.3
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 5.5e-82 310.1 322 57.5
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 5.5e-82 310.1 322 57.5
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 5.9e-76 290.0 369 49.1
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 5.3e-69 266.9 660 36.2
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 2.9e-67 261.2 790 33.8
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 5.0e-67 260.4 931 31.5
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 2.0e-60 238.4 728 32.6
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 5.0e-59 233.8 812 30.8
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 5.0e-59 233.8 744 33.7
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 1.4e-58 232.3 266 51.9
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 3.8e-51 207.6 421 38.0
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 4.8e-46 190.7 344 40.1
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.5e-42 179.1 694 29.8
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 1.7e-38 165.6 134 68.7
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 2.4e-37 161.8 211 47.4
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 4.5e-36 157.5 163 52.1
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 1.7e-35 155.6 130 63.1
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 3.8e-35 154.5 144 58.3
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 6.8e-24 117.1 178 40.4
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 4.4e-23 114.4 112 52.7
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 3.3e-18 98.2 77 66.2
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 5.6e-18 97.4 110 53.6
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 1.2e-15 89.7 106 43.4
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 2.0e-15 89.0 99 59.6
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 2.2e-14 85.5 169 36.1
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 4.9e-14 84.3 130 39.2
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 1.9e-13 82.4 152 38.2
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 1.2e-12 79.7 130 44.6
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 2.7e-12 78.6 211 32.2
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 1.7e-11 75.9 87 48.3
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 1.7e-11 75.9 87 48.3
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 3.3e-10 71.6 366 28.1
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 3.6e-09 68.2 58 60.3
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 4.7e-09 67.8 332 28.3
CAN.G358.52 Capsicum annuum HOM05D003640 ORTHO05D004439 1.2e-07 63.2 94 41.5
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 2.0e-07 62.4 97 45.4
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 4.4e-07 61.2 116 35.3
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 2.9e-06 58.5 48 66.7


User provided reference genes

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