Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 0.0e+00 1879.4 923 100.0
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 0.0e+00 1628.6 881 91.7
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 0.0e+00 1258.0 954 67.8
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 9.7e-287 990.3 782 65.6
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 3.3e-218 762.7 980 44.4
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 8.4e-214 748.0 986 44.6
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 5.3e-208 728.8 988 44.2
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 9.9e-199 698.0 873 44.8
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 2.9e-198 696.4 699 53.2
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 2.9e-198 696.4 1000 41.7
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 2.2e-190 670.2 989 39.5
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 3.7e-185 652.9 810 47.7
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 4.1e-176 622.9 952 40.0
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 3.3e-170 603.2 626 51.0
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 9.7e-170 601.7 722 48.1
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 2.8e-169 600.1 689 49.6
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 1.1e-168 598.2 722 47.9
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 1.8e-168 597.4 939 39.9
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 6.9e-168 595.5 707 46.5
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 2.0e-167 594.0 724 47.7
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 1.0e-166 591.7 659 50.2
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 1.0e-166 591.7 668 47.9
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 2.7e-164 583.6 699 47.1
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 6.7e-163 578.9 675 47.1
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.5e-162 577.8 692 48.0
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 2.0e-162 577.4 692 47.8
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 1.6e-159 567.8 692 47.1
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 7.7e-159 565.5 695 46.5
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 1.0e-158 565.1 702 45.6
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 2.2e-158 563.9 705 45.0
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 8.5e-158 562.0 650 48.5
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 2.7e-156 557.0 696 45.4
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 4.7e-156 556.2 695 45.3
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 6.1e-156 555.8 686 45.5
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 1.4e-155 554.7 679 45.4
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 8.8e-155 552.0 706 43.5
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 1.5e-154 551.2 667 44.7
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 7.5e-154 548.9 682 44.6
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 8.2e-153 545.4 680 44.9
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 9.1e-152 542.0 670 44.2
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 1.6e-151 541.2 684 45.0
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 2.7e-151 540.4 684 45.2
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.0e-150 538.5 684 45.0
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 1.7e-150 537.7 658 46.5
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 5.5e-149 532.7 692 42.8
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 1.2e-148 531.6 692 42.3
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 3.6e-148 530.0 686 42.3
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 1.8e-147 527.7 660 44.7
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 1.2e-146 525.0 861 36.4
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 2.8e-145 520.4 684 42.7
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 8.3e-145 518.8 689 42.5
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 2.4e-144 517.3 680 42.2
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.4e-144 517.3 657 43.4
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 7.0e-144 515.8 696 42.5
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 7.7e-143 512.3 691 41.2
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 1.7e-142 511.1 721 43.3
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 5.0e-142 509.6 679 42.4
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 3.6e-140 503.4 696 40.1
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 1.4e-139 501.5 691 40.8
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.4e-139 501.5 657 42.2
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.0e-138 497.7 706 40.7
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 2.0e-138 497.7 668 41.5
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 3.5e-135 486.9 710 42.1
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 5.9e-135 486.1 671 40.7
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 7.8e-135 485.7 659 41.0
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 7.8e-135 485.7 658 41.8
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 2.3e-134 484.2 715 40.4
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 5.0e-134 483.0 695 41.0
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 5.0e-134 483.0 715 40.3
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 5.0e-134 483.0 658 41.5
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 2.5e-133 480.7 482 52.5
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 3.3e-133 480.3 659 41.6
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 3.3e-133 480.3 627 45.5
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 4.3e-133 479.9 629 42.8
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 9.5e-133 478.8 683 40.1
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 1.2e-132 478.4 672 41.2
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 4.7e-132 476.5 668 41.3
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 1.4e-131 474.9 668 41.6
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 1.8e-131 474.6 668 41.3
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 6.8e-131 472.6 731 39.1
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 5.7e-130 469.5 665 42.1
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 1.4e-128 464.9 671 40.4
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 1.8e-128 464.5 617 43.8
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 2.7e-127 460.7 687 39.6
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.5e-125 454.9 715 39.2
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 2.0e-122 444.5 684 39.6
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 3.0e-118 430.6 566 44.0
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 3.9e-118 430.3 672 37.4
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 5.0e-118 429.9 659 39.5
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 8.9e-115 419.1 635 40.5
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 1.2e-108 398.7 841 34.0
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 7.6e-106 389.4 601 38.6
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 7.1e-104 382.9 915 30.4
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 2.7e-103 380.9 662 34.7
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 4.6e-103 380.2 413 50.4
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 7.3e-101 372.9 658 35.9
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 9.0e-99 365.9 696 36.8
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 1.8e-91 341.7 572 39.5
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 2.0e-90 338.2 453 43.0
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 1.8e-86 325.1 719 33.1
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 9.9e-82 309.3 721 31.8
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 1.0e-78 299.3 418 40.2
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 2.4e-75 288.1 409 42.1
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 9.3e-72 276.2 394 40.9
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 1.1e-69 269.2 390 40.8
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 9.0e-67 259.6 306 48.7
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 1.5e-66 258.8 303 46.9
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 4.5e-66 257.3 710 29.4
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 7.7e-66 256.5 757 27.9
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 7.9e-63 246.5 265 47.9
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 1.0e-62 246.1 373 37.3
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 6.9e-59 233.4 377 40.1
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 5.9e-58 230.3 373 38.6
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 1.1e-43 183.0 368 33.2
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 2.6e-42 178.3 296 37.5
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.9e-40 172.2 269 37.2
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 1.8e-38 165.6 270 39.6
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 7.0e-35 153.7 785 23.9
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 3.5e-34 151.4 338 31.1
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 6.5e-33 147.1 282 34.8
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 2.0e-26 125.6 288 27.4
EL10As6g23691 Beta vulgaris HOM05D005399 ORTHO05D006347 3.3e-24 118.2 109 56.9
AUR62037718 Chenopodium quinoa HOM05D000493 ORTHO05D007622 9.2e-19 100.1 107 55.1
AUR62042888 Chenopodium quinoa HOM05D000493 ORTHO05D007622 4.5e-18 97.8 107 53.3
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 8.0e-15 87.0 137 38.7
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 4.0e-14 84.7 172 35.5
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 1.5e-13 82.8 86 55.8
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 3.4e-13 81.6 118 36.4


User provided reference genes

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