Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 8.3e-84 313.5 146 100.0
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 7.1e-83 310.5 146 98.6
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 3.3e-80 301.6 146 94.5
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 8.4e-76 287.0 146 89.0
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 5.6e-72 274.2 146 86.3
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 2.4e-70 268.9 146 84.2
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 6.6e-65 250.8 147 76.9
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 1.1e-64 250.0 147 76.2
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 4.3e-64 248.1 146 76.0
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 4.3e-64 248.1 146 75.3
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 5.6e-64 247.7 146 76.7
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 9.6e-64 246.9 146 75.3
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 9.6e-64 246.9 146 75.3
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 9.6e-64 246.9 146 75.3
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.6e-63 246.1 146 75.3
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 3.6e-63 245.0 146 76.0
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 6.2e-63 244.2 146 74.0
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 6.2e-63 244.2 140 75.7
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 4.0e-62 241.5 146 73.3
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 6.9e-62 240.7 146 72.6
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 9.0e-62 240.4 146 72.6
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 9.0e-62 240.4 148 74.3
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 2.0e-61 239.2 146 71.9
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 2.6e-61 238.8 146 72.6
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 2.6e-61 238.8 146 73.3
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 3.4e-61 238.4 147 73.5
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 3.4e-61 238.4 147 74.1
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 4.5e-61 238.0 146 74.0
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 5.8e-61 237.7 146 73.3
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 5.8e-61 237.7 146 73.3
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 5.8e-61 237.7 146 72.6
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 5.8e-61 237.7 146 71.2
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 5.8e-61 237.7 146 71.2
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 7.6e-61 237.3 145 71.0
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 9.9e-61 236.9 146 72.6
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 1.7e-60 236.1 146 71.9
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 2.2e-60 235.7 147 73.5
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.9e-60 235.3 146 74.0
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.9e-60 235.3 147 73.5
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.9e-60 235.3 147 73.5
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 3.8e-60 235.0 140 75.7
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 6.4e-60 234.2 147 72.8
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 1.1e-59 233.4 146 71.2
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 1.4e-59 233.0 146 72.6
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 1.4e-59 233.0 146 71.9
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.4e-59 233.0 146 71.9
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 1.9e-59 232.6 146 71.2
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.9e-59 232.6 146 70.5
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 3.2e-59 231.9 150 72.7
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 4.2e-59 231.5 140 72.1
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 5.4e-59 231.1 148 72.3
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 7.1e-59 230.7 146 69.2
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 7.1e-59 230.7 137 75.9
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 1.2e-58 229.9 148 71.6
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 1.6e-58 229.6 148 73.0
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 1.6e-58 229.6 146 69.2
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 1.6e-58 229.6 146 72.6
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 2.1e-58 229.2 147 72.8
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.1e-58 229.2 146 69.9
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.1e-58 229.2 146 69.9
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.1e-58 229.2 147 72.1
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.7e-58 228.8 146 70.5
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 6.0e-58 227.6 146 69.9
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 7.9e-58 227.3 147 70.1
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.0e-57 226.9 147 68.7
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 1.0e-57 226.9 147 70.1
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.3e-57 226.5 147 68.7
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 2.3e-57 225.7 148 70.9
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 3.0e-57 225.3 145 69.7
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 3.9e-57 224.9 138 71.7
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 5.1e-57 224.6 147 70.1
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 5.1e-57 224.6 147 70.1
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 5.1e-57 224.6 146 69.2
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 6.7e-57 224.2 146 69.2
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 8.7e-57 223.8 146 69.9
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.5e-56 223.0 147 68.0
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 1.5e-56 223.0 144 70.1
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 1.5e-56 223.0 146 68.5
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 1.9e-56 222.6 146 67.8
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 1.9e-56 222.6 146 68.5
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.9e-56 222.6 146 67.1
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 1.9e-56 222.6 148 69.6
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 2.5e-56 222.2 146 69.2
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 4.3e-56 221.5 147 67.3
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 9.6e-56 220.3 146 66.4
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 1.3e-55 219.9 146 67.1
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 1.3e-55 219.9 148 69.6
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 2.1e-55 219.2 146 67.8
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.1e-55 219.2 146 65.8
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 3.7e-55 218.4 146 65.8
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 3.7e-55 218.4 151 68.9
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 4.8e-55 218.0 131 71.8
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 4.8e-55 218.0 146 65.8
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 8.1e-55 217.2 149 68.5
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.4e-54 216.5 150 68.7
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 1.4e-54 216.5 148 66.2
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 1.8e-54 216.1 146 65.1
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 2.4e-54 215.7 149 68.5
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 3.1e-54 215.3 146 67.1
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 3.1e-54 215.3 139 69.1
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 3.1e-54 215.3 146 65.1
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.0e-54 214.9 140 68.6
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 4.0e-54 214.9 148 67.6
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 6.9e-54 214.2 140 70.7
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 9.0e-54 213.8 132 74.2
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 9.0e-54 213.8 132 74.2
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 1.5e-53 213.0 136 69.9
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 1.5e-53 213.0 136 69.9
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.0e-53 212.6 149 66.4
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.6e-53 212.2 148 68.2
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 3.4e-53 211.8 132 73.5
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 5.8e-53 211.1 146 63.7
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 9.9e-53 210.3 136 69.9
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 9.9e-53 210.3 136 69.9
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 2.2e-52 209.1 135 68.9
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 4.9e-52 208.0 142 67.6
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 6.4e-52 207.6 146 66.4
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 8.4e-52 207.2 139 69.8
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 8.4e-52 207.2 146 63.0
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.1e-51 206.8 117 79.5
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 7.1e-51 204.1 150 65.3
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.6e-50 203.0 147 63.3
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 4.6e-50 201.4 141 67.4
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.8e-49 199.5 130 68.5
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 1.8e-49 199.5 150 64.0
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 1.8e-49 199.5 150 64.0
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 5.1e-49 198.0 125 67.2
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 1.1e-48 196.8 150 64.7
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.5e-48 196.4 151 60.3
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 3.3e-48 195.3 150 64.0
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 3.3e-48 195.3 150 64.0
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 3.3e-48 195.3 150 64.0
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 4.3e-48 194.9 146 64.4
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 1.3e-47 193.4 150 63.3
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 6.2e-47 191.0 148 64.2
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 6.2e-47 191.0 148 64.2
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 6.2e-47 191.0 148 64.2
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 6.2e-47 191.0 146 63.0
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 8.2e-47 190.7 134 66.4
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 4.0e-46 188.3 143 67.1
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 2.6e-45 185.7 123 68.3
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.1e-43 180.3 132 63.6
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 1.4e-38 163.3 101 72.3
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 5.9e-37 157.9 97 77.3
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 2.9e-36 155.6 147 52.4
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 5.0e-36 154.8 101 67.3
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 7.2e-35 151.0 96 75.0
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 7.2e-35 151.0 146 54.1
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 9.4e-35 150.6 146 50.0
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 1.8e-33 146.4 138 54.3
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 5.1e-25 118.2 107 51.4
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 2.6e-21 105.9 68 70.6
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 5.0e-20 101.7 75 62.7
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 3.2e-19 99.0 97 50.5
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 5.5e-19 98.2 126 43.7
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 1.5e-11 73.6 99 39.4
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 9.7e-08 60.8 72 40.3
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 8.2e-07 57.8 37 62.2


User provided reference genes

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