Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 0.0e+00 1522.7 881 100.0
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 0.0e+00 1213.0 899 81.0
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 3.9e-144 516.5 994 44.1
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 5.4e-101 373.2 963 38.0
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 7.6e-63 246.5 241 64.3
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 4.3e-58 230.7 1041 31.2
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 2.5e-42 178.3 407 37.3
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.5e-18 98.6 173 39.3
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 5.7e-18 97.4 283 33.6
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 8.2e-17 93.6 128 45.3
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 4.1e-16 91.3 168 40.5
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 4.1e-16 91.3 152 40.8
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 3.4e-15 88.2 136 41.9
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 1.7e-14 85.9 129 43.4
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 1.7e-14 85.9 137 44.5
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 3.8e-14 84.7 315 27.9
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 3.8e-14 84.7 133 42.9
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 8.5e-14 83.6 455 26.6
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 1.1e-13 83.2 114 45.6
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 1.1e-13 83.2 365 28.8
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.4e-13 82.8 173 34.1
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.2e-13 81.6 397 27.0
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 1.6e-12 79.3 443 28.0
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 4.6e-12 77.8 129 41.1
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 7.9e-12 77.0 425 27.3
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 1.0e-11 76.6 111 48.6
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 1.4e-11 76.3 173 35.8
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 1.4e-11 76.3 173 35.8
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.4e-11 76.3 118 48.3
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 2.3e-11 75.5 227 32.2
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 2.3e-11 75.5 391 26.1
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 3.9e-11 74.7 597 26.5
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 3.9e-11 74.7 140 37.1
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 5.1e-11 74.3 133 37.6
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 8.8e-11 73.6 127 42.5
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 1.1e-10 73.2 100 47.0
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 1.5e-10 72.8 504 25.6
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 3.3e-10 71.6 109 44.0
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 3.3e-10 71.6 211 32.2
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 3.3e-10 71.6 369 26.8
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 5.7e-10 70.9 127 38.6
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 7.4e-10 70.5 326 29.4
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 7.4e-10 70.5 283 26.5
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 9.7e-10 70.1 109 42.2
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 1.3e-09 69.7 445 26.5
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 1.7e-09 69.3 128 45.3
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 1.7e-09 69.3 212 32.5
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 2.2e-09 68.9 124 42.7
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 2.2e-09 68.9 483 25.9
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 2.2e-09 68.9 74 55.4
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 2.2e-09 68.9 112 43.8
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 2.8e-09 68.6 133 42.1
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 8.2e-09 67.0 127 43.3
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 1.1e-08 66.6 92 48.9
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 1.1e-08 66.6 125 37.6
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 1.4e-08 66.2 97 49.5
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.4e-08 66.2 137 38.0
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.4e-08 66.2 97 44.3
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 1.4e-08 66.2 122 37.7
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 1.8e-08 65.9 304 29.3
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 1.8e-08 65.9 618 25.6
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 2.4e-08 65.5 384 25.3
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 2.4e-08 65.5 384 25.3
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 2.4e-08 65.5 154 32.5
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 3.1e-08 65.1 434 26.5
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 6.9e-08 63.9 599 23.9
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 6.9e-08 63.9 441 26.5
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.9e-08 63.9 266 27.4
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 6.9e-08 63.9 152 36.8
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 9.1e-08 63.5 111 40.5
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.5e-07 62.8 595 23.5
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 2.0e-07 62.4 431 27.8
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 2.0e-07 62.4 507 23.9
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 2.0e-07 62.4 606 24.4
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 2.0e-07 62.4 497 24.3
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 4.5e-07 61.2 52 57.7
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.5e-07 61.2 287 28.6
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 4.5e-07 61.2 276 27.2
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 5.9e-07 60.8 115 39.1
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 7.7e-07 60.5 532 24.4
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 7.7e-07 60.5 412 24.0
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.0e-06 60.1 402 27.4
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.3e-06 59.7 517 26.9
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 1.3e-06 59.7 46 60.9
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.2e-06 58.9 303 26.7
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 3.8e-06 58.2 498 25.5
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 3.8e-06 58.2 94 48.9
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 5.0e-06 57.8 497 23.7
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 5.0e-06 57.8 497 23.7


User provided reference genes

Program Settings