Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 3.3e-95 351.7 172 100.0
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 6.8e-69 264.2 135 94.8
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 4.6e-57 224.9 135 80.7
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 2.4e-50 202.6 159 64.2
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 3.2e-50 202.2 139 72.7
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 3.2e-50 202.2 136 74.3
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 2.3e-48 196.1 139 67.6
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 2.3e-48 196.1 136 70.6
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 3.0e-48 195.7 137 68.6
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 3.9e-48 195.3 139 68.3
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 3.9e-48 195.3 136 69.1
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 3.9e-48 195.3 136 70.6
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 5.1e-48 194.9 139 69.8
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 6.7e-48 194.5 137 71.5
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 1.5e-47 193.4 136 66.9
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 1.5e-47 193.4 139 66.9
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 2.5e-47 192.6 136 67.6
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 3.3e-47 192.2 136 66.9
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 4.3e-47 191.8 136 69.1
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 4.3e-47 191.8 139 66.9
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 9.6e-47 190.7 140 67.9
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 9.6e-47 190.7 136 66.9
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.3e-46 190.3 136 68.4
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 1.6e-46 189.9 147 63.3
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.6e-46 189.9 137 65.7
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 1.6e-46 189.9 136 66.2
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 1.6e-46 189.9 139 66.2
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.1e-46 189.5 135 66.7
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 2.1e-46 189.5 136 67.6
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 2.1e-46 189.5 135 65.9
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 2.8e-46 189.1 135 65.9
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 2.8e-46 189.1 139 66.2
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 4.8e-46 188.3 136 66.9
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 4.8e-46 188.3 135 65.2
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 6.2e-46 188.0 136 65.4
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 8.1e-46 187.6 139 66.2
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.8e-45 186.4 135 65.2
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 1.8e-45 186.4 136 66.9
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 2.4e-45 186.0 139 65.5
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 3.1e-45 185.7 139 64.7
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 4.0e-45 185.3 136 64.0
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 4.0e-45 185.3 137 65.0
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.0e-45 185.3 135 63.7
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 5.3e-45 184.9 136 68.4
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 2.0e-44 183.0 119 73.9
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 2.0e-44 183.0 135 65.2
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 2.0e-44 183.0 136 63.2
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 2.0e-44 183.0 138 63.8
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 2.6e-44 182.6 141 64.5
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 3.4e-44 182.2 136 65.4
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 3.4e-44 182.2 137 62.8
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 5.8e-44 181.4 136 66.9
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 5.8e-44 181.4 141 62.4
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.3e-43 180.3 136 63.2
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 1.7e-43 179.9 137 65.0
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 3.8e-43 178.7 135 65.2
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 3.8e-43 178.7 136 62.5
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 4.9e-43 178.3 136 64.7
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 8.4e-43 177.6 138 61.6
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 8.4e-43 177.6 139 64.0
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 8.4e-43 177.6 133 64.7
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.1e-42 177.2 136 64.0
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 2.4e-42 176.0 136 64.0
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 2.4e-42 176.0 136 61.8
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 4.2e-42 175.3 136 61.8
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 5.5e-42 174.9 137 62.8
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 7.1e-42 174.5 136 61.0
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 1.2e-41 173.7 138 63.0
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 2.1e-41 172.9 140 61.4
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 2.1e-41 172.9 140 61.4
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.1e-41 172.9 143 60.1
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 4.6e-41 171.8 141 62.4
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 6.0e-41 171.4 155 56.1
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.0e-40 170.6 136 58.1
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.0e-40 170.6 135 63.0
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 1.3e-40 170.2 136 61.0
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 3.0e-40 169.1 133 63.9
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 3.0e-40 169.1 138 58.0
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.9e-40 168.7 135 59.3
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 3.9e-40 168.7 135 64.4
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 8.7e-40 167.5 134 57.5
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.1e-39 167.2 137 62.0
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.5e-39 166.8 137 62.0
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.5e-39 166.8 135 60.7
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.9e-39 166.4 130 60.8
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 2.5e-39 166.0 135 63.7
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 3.3e-39 165.6 135 58.5
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 3.3e-39 165.6 136 60.3
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 7.4e-39 164.5 136 57.4
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 3.7e-38 162.2 135 55.6
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 8.2e-38 161.0 136 56.6
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.1e-37 160.6 174 51.1
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.4e-37 160.2 127 61.4
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 1.4e-37 160.2 130 58.5
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.4e-37 160.2 137 57.7
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 4.0e-37 158.7 134 56.7
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 4.0e-37 158.7 140 57.1
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 5.3e-37 158.3 130 57.7
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.5e-36 156.8 134 55.2
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 2.0e-36 156.4 131 56.5
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 2.0e-36 156.4 131 56.5
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 2.0e-36 156.4 140 56.4
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 2.6e-36 156.0 136 55.1
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 3.4e-36 155.6 131 56.5
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 4.5e-36 155.2 135 53.3
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.5e-36 155.2 127 59.1
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.0e-35 154.1 134 54.5
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 2.9e-35 152.5 170 47.6
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 3.8e-35 152.1 143 49.7
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 3.8e-35 152.1 138 58.0
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 3.8e-35 152.1 137 56.2
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 8.4e-35 151.0 203 42.9
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 1.1e-34 150.6 105 69.5
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 4.2e-34 148.7 136 50.7
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 4.2e-34 148.7 136 50.7
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 4.2e-34 148.7 136 50.7
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 4.2e-34 148.7 136 50.7
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 4.2e-34 148.7 136 50.7
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 4.2e-34 148.7 136 50.7
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 5.5e-34 148.3 136 50.7
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 5.5e-34 148.3 136 50.7
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 5.5e-34 148.3 136 50.7
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 7.1e-34 147.9 128 56.2
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 9.3e-34 147.5 217 41.9
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 2.7e-33 146.0 136 50.0
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 2.7e-33 146.0 135 52.6
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 3.5e-33 145.6 135 51.9
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 2.3e-32 142.9 137 51.8
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 5.1e-32 141.7 111 62.2
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 2.5e-31 139.4 134 53.0
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.5e-31 139.4 212 41.5
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 2.9e-27 125.9 117 52.1
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 6.5e-27 124.8 130 49.2
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 6.5e-27 124.8 117 53.0
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 6.5e-27 124.8 130 50.0
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 6.5e-27 124.8 89 64.0
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.9e-26 123.2 121 51.2
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.9e-26 123.2 117 52.1
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 2.5e-26 122.9 117 50.4
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 2.5e-26 122.9 117 51.3
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 2.5e-26 122.9 117 50.4
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 5.5e-26 121.7 105 53.3
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 9.3e-26 120.9 125 48.8
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.0e-24 117.5 136 41.9
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 1.3e-24 117.1 107 52.3
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.9e-24 115.5 130 46.2
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 6.7e-24 114.8 119 50.4
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 4.2e-18 95.5 133 39.8
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 1.0e-16 90.9 100 48.0
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 2.0e-15 86.7 96 53.1
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 2.8e-14 82.8 84 46.4
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 5.9e-12 75.1 85 45.9
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 3.8e-11 72.4 150 35.3
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.1e-10 70.9 85 49.4
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.4e-10 70.5 55 58.2
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 5.5e-10 68.6 123 35.0
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 8.0e-09 64.7 43 72.1
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 8.0e-09 64.7 117 35.0
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 1.1e-07 60.8 130 32.3
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 2.0e-07 60.1 75 49.3
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 2.2e-06 56.6 42 69.0


User provided reference genes

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