Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62005227 Chenopodium quinoa HOM05D007682 ORTHO05D009690 3.5e-26 122.5 63 100.0
AUR62000737 Chenopodium quinoa HOM05D007682 ORTHO05D009690 2.3e-25 119.8 63 96.8
Sc16g0008750 Simmondsia chinensis HOM05D000036 ORTHO05D001038 7.7e-21 104.8 63 85.7
Oeu010924.1 Olea europaea HOM05D007682 ORTHO05D009690 2.9e-20 102.8 62 82.3
Os12g0554000 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 1.4e-19 100.5 63 79.4
SMO367G0406 Selaginella moellendorffii HOM05D007682 ORTHO05D009690 1.4e-19 100.5 59 86.4
CSS0049840 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 3.2e-19 99.4 62 80.6
SEGI_39810 Sequoiadendron giganteum HOM05D007682 ORTHO05D009690 3.2e-19 99.4 59 84.7
TAR633G0769 Trochodendron aralioides HOM05D007682 ORTHO05D009690 3.2e-19 99.4 62 79.0
Hma1.2p1_0472F.1_g159680 Hydrangea macrophylla HOM05D007682 ORTHO05D009690 4.2e-19 99.0 62 80.6
Manes.08G115600 Manihot esculenta HOM05D007682 ORTHO05D009690 4.2e-19 99.0 60 85.0
Peaxi162Scf00037g01515 Petunia axillaris HOM05D007682 ORTHO05D009690 4.2e-19 99.0 59 84.7
Solyc01g099930.3 Solanum lycopersicum HOM05D007682 ORTHO05D009690 4.2e-19 99.0 59 84.7
Os12g0516700 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 5.5e-19 98.6 63 77.8
Haze_04118 Corylus avellana HOM05D007682 ORTHO05D009690 7.2e-19 98.2 62 77.4
Nn4g25761 Nelumbo nucifera HOM05D007682 ORTHO05D009690 9.4e-19 97.8 60 81.7
THA.LOC104821730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 9.4e-19 97.8 59 83.1
CAN.G1273.42 Capsicum annuum HOM05D007682 ORTHO05D009690 1.6e-18 97.1 59 83.1
Duzib177G0692 Durio zibethinus HOM05D007682 ORTHO05D009690 1.6e-18 97.1 59 83.1
MD10G1017700 Malus domestica HOM05D007682 ORTHO05D009690 1.6e-18 97.1 60 83.3
Nitab4.5_0003113g0070 Nicotiana tabacum HOM05D007682 ORTHO05D009690 1.6e-18 97.1 59 83.1
PSO407G0292 Papaver somniferum HOM05D007682 ORTHO05D009690 1.6e-18 97.1 60 81.7
Prupe.8G021600 Prunus persica HOM05D007682 ORTHO05D009690 1.6e-18 97.1 60 81.7
THA.LOC104818730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 2.7e-18 96.3 63 76.2
PSO170G1207 Papaver somniferum HOM05D007682 ORTHO05D009690 3.6e-18 95.9 60 80.0
SGA_v2.0_scaffold81G26104 Striga asiatica HOM05D007682 ORTHO05D009690 3.6e-18 95.9 62 77.4
ECA236G4368 Erigeron canadensis HOM05D000036 ORTHO05D000441 4.6e-18 95.5 62 79.0
FAN20G0672 Fragaria x ananassa HOM05D007682 ORTHO05D009690 4.6e-18 95.5 60 80.0
FAN24G1339 Fragaria x ananassa HOM05D007682 ORTHO05D009690 4.6e-18 95.5 60 80.0
Glyma.19G231600 Glycine max HOM05D007682 ORTHO05D009690 4.6e-18 95.5 62 77.4
Gohir.A08G208100 Gossypium hirsutum HOM05D007682 ORTHO05D009690 4.6e-18 95.5 62 77.4
Gohir.D08G224900 Gossypium hirsutum HOM05D007682 ORTHO05D009690 4.6e-18 95.5 62 77.4
Potri.005G023000 Populus trichocarpa HOM05D007682 ORTHO05D009690 4.6e-18 95.5 62 79.0
QL03p019528 Quercus lobata HOM05D007682 ORTHO05D009690 4.6e-18 95.5 61 73.8
Gorai.007G301900 Gossypium raimondii HOM05D007682 ORTHO05D009690 6.1e-18 95.1 62 77.4
PGR031G1366 Punica granatum HOM05D007682 ORTHO05D009690 6.1e-18 95.1 62 75.8
Ah.06g189950 Amaranthus hybridus HOM05D007682 ORTHO05D009690 7.9e-18 94.7 51 94.1
BcaNung04745 Brassica carinata HOM05D007682 ORTHO05D009690 7.9e-18 94.7 59 79.7
Eucgr.H03256 Eucalyptus grandis HOM05D007682 ORTHO05D009690 7.9e-18 94.7 62 75.8
Gorai.004G238900 Gossypium raimondii HOM05D007682 ORTHO05D009690 7.9e-18 94.7 62 77.4
GSVIVG01031165001 Vitis vinifera HOM05D000036 ORTHO05D000441 7.9e-18 94.7 60 81.7
arahy.Tifrunner.gnm1.ann1.P6132C Arachis hypogaea HOM05D007682 ORTHO05D009690 1.0e-17 94.4 63 74.6
DCAR_022138 Daucus carota HOM05D007682 ORTHO05D009690 1.0e-17 94.4 59 79.7
RcHm_v2.0_Chr6g0276771 Rosa chinensis HOM05D007682 ORTHO05D009690 1.0e-17 94.4 60 78.3
Actinidia21502 Actinidia chinensis HOM05D007682 ORTHO05D009690 1.4e-17 94.0 62 77.4
Cfa006654 Carpinus fangiana HOM05D007682 ORTHO05D009690 1.4e-17 94.0 62 75.8
CiPaw.08G159600 Carya illinoinensis HOM05D007682 ORTHO05D009690 1.4e-17 94.0 62 72.6
Dinv30837 Davidia involucrata HOM05D007682 ORTHO05D009690 1.4e-17 94.0 62 77.4
Hund07111 Selenicereus undatus HOM05D007682 ORTHO05D009690 1.4e-17 94.0 81 66.7
arahy.Tifrunner.gnm1.ann1.S47DRU Arachis hypogaea HOM05D007682 ORTHO05D009690 1.8e-17 93.6 63 74.6
Glyma.03G234200 Glycine max HOM05D007682 ORTHO05D009690 1.8e-17 93.6 62 75.8
Gohir.D11G279700 Gossypium hirsutum HOM05D007682 ORTHO05D009690 1.8e-17 93.6 62 75.8
Lsat_1_v5_gn_7_72960 Lactuca sativa HOM05D007682 ORTHO05D009690 1.8e-17 93.6 59 79.7
Gohir.A11G269500 Gossypium hirsutum HOM05D007682 ORTHO05D009690 2.3e-17 93.2 62 75.8
HPP92_010663 Vanilla planifolia HOM05D007682 ORTHO05D009690 2.3e-17 93.2 63 81.0
A06p37270 Brassica napus HOM05D007682 ORTHO05D009690 3.0e-17 92.8 59 78.0
C07p41180 Brassica napus HOM05D007682 ORTHO05D009690 3.0e-17 92.8 59 78.0
BolC7t44646H Brassica oleracea HOM05D007682 ORTHO05D009690 3.0e-17 92.8 59 78.0
BraA06t26650Z Brassica rapa HOM05D007682 ORTHO05D009690 3.0e-17 92.8 59 78.0
Cc02_g34370 Coffea canephora HOM05D007682 ORTHO05D009690 3.9e-17 92.4 59 79.7
HanXRQChr11g0340111 Helianthus annuus HOM05D007682 ORTHO05D009690 3.9e-17 92.4 59 78.0
Phvul.006G088300 Phaseolus vulgaris HOM05D007682 ORTHO05D009690 3.9e-17 92.4 62 74.2
Sabra05G0029000 Salix brachista HOM05D007682 ORTHO05D009690 3.9e-17 92.4 62 77.4
Thecc.05G315600 Theobroma cacao HOM05D007682 ORTHO05D009690 3.9e-17 92.4 59 79.7
TWI56G1223 Tripterygium wilfordii HOM05D007682 ORTHO05D009690 3.9e-17 92.4 60 78.3
Sp2g20980 Schrenkiella parvula HOM05D007682 ORTHO05D009690 5.1e-17 92.0 59 78.0
Sed0011876 Sechium edule HOM05D007682 ORTHO05D009690 6.7e-17 91.7 62 74.2
Atru.chr2.100 Acer truncatum HOM05D007682 ORTHO05D009690 8.8e-17 91.3 59 78.0
MSTRG.27972 Avicennia marina HOM05D007682 ORTHO05D009690 8.8e-17 91.3 58 77.6
CARHR186340 Cardamine hirsuta HOM05D007682 ORTHO05D009690 8.8e-17 91.3 59 78.0
Aa31LG11G9610 Aethionema arabicum HOM05D007682 ORTHO05D009690 1.1e-16 90.9 59 76.3
EL10Ac4g09894 Beta vulgaris HOM05D007682 ORTHO05D009690 1.1e-16 90.9 51 88.2
CDE05G1347 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 1.1e-16 90.9 58 77.6
CDE11G0615 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 1.1e-16 90.9 63 71.4
Migut.N02098 Erythranthe guttata HOM05D007682 ORTHO05D009690 1.1e-16 90.9 59 76.3
FAN15G0817 Fragaria x ananassa HOM05D007682 ORTHO05D009690 1.1e-16 90.9 60 76.7
Medtr7g112600 Medicago truncatula HOM05D007682 ORTHO05D009690 1.1e-16 90.9 60 76.7
Psat3g011680 Pisum sativum HOM05D007682 ORTHO05D009690 1.1e-16 90.9 60 76.7
AT5G27860 Arabidopsis thaliana HOM05D007682 ORTHO05D009690 2.5e-16 89.7 59 76.3
TPR.G1619 Trifolium pratense HOM05D007682 ORTHO05D009690 2.5e-16 89.7 60 75.0
Lalb_Chr15g0077471 Lupinus albus HOM05D007682 ORTHO05D009690 5.7e-16 88.6 60 75.0
MBI19_g44105_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 7.4e-16 88.2 54 81.5
Zm00001eb410110 Zea mays HOM05D007682 ORTHO05D009690 9.7e-16 87.8 61 73.8
CSS0031357 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 3.7e-15 85.9 62 71.0
CsaV3_1G038640 Cucumis sativus L. HOM05D007682 ORTHO05D009690 3.7e-15 85.9 59 72.9
Nitab4.5_0003497g0050 Nicotiana tabacum HOM05D007682 ORTHO05D009690 1.8e-14 83.6 52 80.8
AL6G39080 Arabidopsis lyrata HOM05D007682 ORTHO05D009690 1.5e-13 80.5 59 71.2
Lj1g0016295 Lotus japonicus HOM05D007682 ORTHO05D009690 1.5e-13 80.5 67 65.7
unitig_699.g19250 Utricularia gibba HOM05D007682 ORTHO05D009690 4.5e-13 79.0 50 76.0
ATR0693G225 Amborella trichopoda HOM05D007682 ORTHO05D009690 5.9e-13 78.6 52 75.0
HPP92_010684 Vanilla planifolia HOM05D007682 ORTHO05D009690 2.2e-12 76.6 46 87.0
MBI19_g47767_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 1.1e-11 74.3 54 74.1
DCAR_022140 Daucus carota HOM05D007682 ORTHO05D009690 2.1e-10 70.1 52 67.3
VMungo0540G1787 Vigna mungo HOM05D007682 ORTHO05D009690 4.1e-06 55.8 33 84.8


User provided reference genes

Program Settings