Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62005180 Chenopodium quinoa HOM05D003060 ORTHO05D001716 0.0e+00 1144.4 617 100.0
AUR62000787 Chenopodium quinoa HOM05D003060 ORTHO05D001716 1.1e-310 1069.3 619 94.5
EL10Ac4g09376 Beta vulgaris HOM05D003060 ORTHO05D001716 1.3e-197 693.7 611 66.9
Ah.06g189640 Amaranthus hybridus HOM05D003060 ORTHO05D001716 5.3e-156 555.4 628 56.1
Hund21701 Selenicereus undatus HOM05D003060 ORTHO05D001716 3.3e-129 466.5 648 51.2
Sc09g0003030 Simmondsia chinensis HOM05D003060 ORTHO05D001716 7.4e-81 305.8 638 43.3
CANSAT54G0820 Cannabis sativa HOM05D003060 ORTHO05D001716 2.4e-79 300.8 623 39.0
Haze_04161 Corylus avellana HOM05D003060 ORTHO05D001716 1.0e-74 285.4 638 39.7
QL03p012691 Quercus lobata HOM05D003060 ORTHO05D001716 1.3e-74 285.0 598 39.3
Manes.09G169200 Manihot esculenta HOM05D003060 ORTHO05D001716 3.3e-73 280.4 611 38.8
Potri.005G026800 Populus trichocarpa HOM05D003060 ORTHO05D001716 2.8e-72 277.3 652 36.3
Cfa006614 Carpinus fangiana HOM05D003060 ORTHO05D001716 1.1e-71 275.4 636 37.9
Thecc.08G198500 Theobroma cacao HOM05D003060 ORTHO05D001716 1.4e-71 275.0 601 38.6
COL.COLO4_05531 Corchorus olitorius HOM05D003060 ORTHO05D001716 1.2e-70 271.9 601 38.6
Glyma.19G234300 Glycine max HOM05D003060 ORTHO05D001716 5.8e-70 269.6 586 37.7
Duzib211G0658 Durio zibethinus HOM05D003060 ORTHO05D001716 4.9e-69 266.5 597 37.7
TWI36G0905 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 2.5e-68 264.2 632 36.9
Sed0012843 Sechium edule HOM05D003060 ORTHO05D001716 1.6e-67 261.5 632 38.0
arahy.Tifrunner.gnm1.ann1.U2HTAJ Arachis hypogaea HOM05D003060 ORTHO05D001716 3.5e-67 260.4 625 37.3
CiPaw.08G163000 Carya illinoinensis HOM05D003060 ORTHO05D001716 1.3e-66 258.5 623 39.6
arahy.Tifrunner.gnm1.ann1.LGT5H6 Arachis hypogaea HOM05D003060 ORTHO05D001716 3.9e-66 256.9 597 38.0
TWI56G0319 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 5.1e-66 256.5 584 36.5
MELO3C004230.2 Cucumis melo HOM05D003060 ORTHO05D001716 1.1e-65 255.4 618 36.7
Sabra05G0032100 Salix brachista HOM05D003060 ORTHO05D001716 1.5e-65 255.0 651 35.0
Duzib177G0733 Durio zibethinus HOM05D003060 ORTHO05D001716 9.6e-65 252.3 579 38.3
Ciclev10000070m.g Citrus clementina HOM05D003060 ORTHO05D001716 4.8e-64 250.0 583 37.4
Sc16g0008560 Simmondsia chinensis HOM05D003060 ORTHO05D001716 4.8e-64 250.0 587 38.0
CsaV3_2G006550 Cucumis sativus L. HOM05D003060 ORTHO05D001716 6.3e-64 249.6 618 36.9
Glyma.10G152700 Glycine max HOM05D003060 ORTHO05D001716 1.1e-63 248.8 581 36.7
Actinidia19785 Actinidia chinensis HOM05D003060 ORTHO05D001716 6.9e-63 246.1 585 37.1
Eucgr.H04503 Eucalyptus grandis HOM05D003060 ORTHO05D001716 9.0e-63 245.7 618 36.9
Gorai.009G287300 Gossypium raimondii HOM05D003060 ORTHO05D001716 1.2e-62 245.4 587 37.0
Glyma.20G235700 Glycine max HOM05D003060 ORTHO05D001716 1.5e-62 245.0 591 37.2
Duzib116G0105 Durio zibethinus HOM05D003060 ORTHO05D001716 2.0e-62 244.6 577 37.3
Atru.chr2.14 Acer truncatum HOM05D003060 ORTHO05D001716 3.4e-62 243.8 625 37.0
TWI12G1080 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 3.4e-62 243.8 619 35.4
MD12G1216400 Malus domestica HOM05D003060 ORTHO05D001716 5.9e-62 243.0 628 34.7
Actinidia24646 Actinidia chinensis HOM05D003060 ORTHO05D001716 7.6e-62 242.7 584 36.8
Gohir.D05G274200 Gossypium hirsutum HOM05D003060 ORTHO05D001716 1.0e-61 242.3 584 36.6
Lj5g0001145 Lotus japonicus HOM05D003060 ORTHO05D001716 2.2e-61 241.1 589 34.8
VMungo0540G1887 Vigna mungo HOM05D003060 ORTHO05D001716 3.8e-61 240.4 631 36.8
Potri.013G018700 Populus trichocarpa HOM05D003060 ORTHO05D001716 1.1e-60 238.8 649 33.9
Lalb_Chr18g0045701 Lupinus albus HOM05D003060 ORTHO05D001716 4.2e-60 236.9 595 37.3
FAN14G2973 Fragaria x ananassa HOM05D003060 ORTHO05D001716 9.3e-60 235.7 657 36.1
Lalb_Chr15g0077301 Lupinus albus HOM05D003060 ORTHO05D001716 9.3e-60 235.7 607 35.7
FAN09G4310 Fragaria x ananassa HOM05D003060 ORTHO05D001716 1.2e-59 235.3 648 35.5
Phvul.006G090511 Phaseolus vulgaris HOM05D003060 ORTHO05D001716 1.2e-59 235.3 618 35.6
Nitab4.5_0004754g0020 Nicotiana tabacum HOM05D003060 ORTHO05D001716 2.1e-59 234.6 553 36.3
FvH4_6g06310 Fragaria vesca HOM05D003060 ORTHO05D001716 2.7e-59 234.2 652 36.3
ClCG02G015530 Citrullus lanatus HOM05D003060 ORTHO05D001716 1.8e-58 231.5 600 36.3
Nitab4.5_0002344g0090 Nicotiana tabacum HOM05D003060 ORTHO05D001716 2.3e-58 231.1 552 35.5
TAR633G1311 Trochodendron aralioides HOM05D003060 ORTHO05D001716 1.1e-57 228.8 599 37.4
Peaxi162Scf00037g00924 Petunia axillaris HOM05D003060 ORTHO05D001716 1.5e-57 228.4 545 36.0
Prupe.6G322700 Prunus persica HOM05D003060 ORTHO05D001716 1.5e-57 228.4 631 35.5
VMungo0540G0889 Vigna mungo HOM05D003060 ORTHO05D001716 1.5e-57 228.4 539 37.5
TAR636G0574 Trochodendron aralioides HOM05D003060 ORTHO05D001716 1.9e-57 228.0 600 35.2
Medtr7g113180 Medicago truncatula HOM05D003060 ORTHO05D001716 2.5e-57 227.6 655 33.4
RcHm_v2.0_Chr3g0455351 Rosa chinensis HOM05D003060 ORTHO05D001716 2.5e-57 227.6 600 36.5
Ca_05807_v3 Cicer arietinum L. HOM05D003060 ORTHO05D001716 7.4e-57 226.1 601 34.8
Cpa.g.sc48.79 Carica papaya HOM05D003060 ORTHO05D001716 9.7e-57 225.7 638 34.6
TPR.G33216 Trifolium pratense HOM05D003060 ORTHO05D001716 9.7e-57 225.7 597 34.7
PGR031G3073 Punica granatum HOM05D003060 ORTHO05D001716 1.3e-56 225.3 584 34.8
TAR362G0619 Trochodendron aralioides HOM05D003060 ORTHO05D001716 1.3e-56 225.3 599 36.6
Phvul.006G090600 Phaseolus vulgaris HOM05D003060 ORTHO05D001716 3.7e-56 223.8 649 34.2
FAN02G1847 Fragaria x ananassa HOM05D003060 ORTHO05D001716 2.4e-55 221.1 646 34.7
FAN05G5493 Fragaria x ananassa HOM05D003060 ORTHO05D001716 2.4e-55 221.1 642 35.2
Psat0s545g0040 Pisum sativum HOM05D003060 ORTHO05D001716 4.5e-54 216.9 615 34.3
Hma1.2p1_1212F.1_g267400 Hydrangea macrophylla HOM05D003060 ORTHO05D001716 2.9e-53 214.2 598 35.3
THA.LOC104802799 Tarenaya hassleriana HOM05D003060 ORTHO05D001716 2.9e-53 214.2 588 35.4
Sabra13G0021300 Salix brachista HOM05D003060 ORTHO05D001716 3.8e-53 213.8 641 32.9
PGSC0003DMG402024702 Solanum tuberosum HOM05D003060 ORTHO05D001716 1.9e-52 211.5 522 35.4
Cc00_g10500 Coffea canephora HOM05D003060 ORTHO05D001716 2.5e-52 211.1 604 34.1
Nn3g21411 Nelumbo nucifera HOM05D003060 ORTHO05D001716 7.2e-52 209.5 616 35.6
MSTRG.20426 Avicennia marina HOM05D003060 ORTHO05D001716 3.0e-50 204.1 614 33.2
Aqoxy2G03022 Aquilegia oxysepala HOM05D003060 ORTHO05D001716 6.7e-50 203.0 601 33.6
DCAR_003342 Daucus carota HOM05D003060 ORTHO05D001716 8.8e-50 202.6 592 35.6
Lj1g0012568 Lotus japonicus HOM05D003060 ORTHO05D001716 1.1e-49 202.2 638 33.1
AT5G27650 Arabidopsis thaliana HOM05D003060 ORTHO05D001716 1.3e-48 198.7 530 35.1
CDE08G1209 Ceratophyllum demersum HOM05D003060 ORTHO05D001716 2.2e-48 198.0 592 33.3
Oeu010912.1 Olea europaea HOM05D003060 ORTHO05D001716 3.7e-48 197.2 645 31.9
vmacro04969 Vaccinium macrocarpon HOM05D003060 ORTHO05D001716 1.8e-47 194.9 559 34.3
ECA132G0003 Erigeron canadensis HOM05D003060 ORTHO05D001716 2.6e-46 191.0 628 32.8
MBI19_g13125_MAGBIO Magnolia biondii HOM05D003060 ORTHO05D001716 4.5e-46 190.3 640 32.8
Sopen01g042920 Solanum pennellii HOM05D003060 ORTHO05D001716 4.5e-46 190.3 523 32.7
vmacro19622 Vaccinium macrocarpon HOM05D003060 ORTHO05D001716 4.5e-46 190.3 598 34.9
HanXRQChr11g0339461 Helianthus annuus HOM05D003060 ORTHO05D001716 7.7e-46 189.5 640 33.1
Solyc01g099360.3 Solanum lycopersicum HOM05D003060 ORTHO05D001716 2.2e-45 188.0 523 33.3
CDE02G1047 Ceratophyllum demersum HOM05D003060 ORTHO05D001716 2.9e-45 187.6 632 32.6
Rhsim07G0186300 Rhododendron simsii HOM05D003060 ORTHO05D001716 5.0e-45 186.8 606 32.0
Dinv40310 Davidia involucrata HOM05D003060 ORTHO05D001716 6.5e-45 186.4 356 39.3
Sp2g20810 Schrenkiella parvula HOM05D003060 ORTHO05D001716 7.2e-44 183.0 562 31.5
Lj9A123G17 Lonicera japonica HOM05D003060 ORTHO05D001716 1.6e-43 181.8 631 30.4
BraA09t36175Z Brassica rapa HOM05D003060 ORTHO05D001716 2.1e-43 181.4 613 33.9
Lj9C129G1 Lonicera japonica HOM05D003060 ORTHO05D001716 2.1e-43 181.4 638 30.9
Rhsim05G0141600 Rhododendron simsii HOM05D003060 ORTHO05D001716 2.1e-43 181.4 528 35.0
Gohir.A05G272000 Gossypium hirsutum HOM05D003060 ORTHO05D001716 1.0e-42 179.1 485 35.1
GSVIVG01031118001 Vitis vinifera HOM05D003060 ORTHO05D001716 1.0e-42 179.1 601 31.3
BcaB04g19679 Brassica carinata HOM05D003060 ORTHO05D001716 1.4e-42 178.7 588 32.7
Aa31LG11G9390 Aethionema arabicum HOM05D003060 ORTHO05D001716 3.9e-42 177.2 584 32.7
PSO063G5863 Papaver somniferum HOM05D003060 ORTHO05D001716 3.9e-42 177.2 583 31.9
PSO782G3442 Papaver somniferum HOM05D003060 ORTHO05D001716 8.8e-42 176.0 582 31.6
DCAR_001942 Daucus carota HOM05D003060 ORTHO05D001716 1.1e-41 175.6 646 30.3
A09p05370 Brassica napus HOM05D003060 ORTHO05D001716 2.6e-41 174.5 609 33.2
Ah.04g160480 Amaranthus hybridus HOM05D003060 ORTHO05D001716 3.3e-41 174.1 305 41.3
Actinidia19783 Actinidia chinensis HOM05D003060 ORTHO05D001716 5.7e-41 173.3 455 35.8
Thhalv10003560m.g Eutrema salsugineum HOM05D003060 ORTHO05D001716 3.7e-40 170.6 626 31.6
Oeu012112.1 Olea europaea HOM05D003060 ORTHO05D001716 6.3e-40 169.9 597 31.5
Carub.0006s2494 Capsella rubella HOM05D003060 ORTHO05D001716 1.1e-39 169.1 529 31.9
AL6G39380 Arabidopsis lyrata HOM05D003060 ORTHO05D001716 1.4e-39 168.7 605 31.2
MSTRG.27986 Avicennia marina HOM05D003060 ORTHO05D001716 4.1e-39 167.2 546 33.9
C09p05850 Brassica napus HOM05D003060 ORTHO05D001716 5.3e-39 166.8 624 32.2
BolC9t53512H Brassica oleracea HOM05D003060 ORTHO05D001716 5.3e-39 166.8 624 32.2
SHI18113 Sapria himalayana HOM05D003060 ORTHO05D001716 9.1e-39 166.0 499 33.3
CARHR186170 Cardamine hirsuta HOM05D003060 ORTHO05D001716 4.5e-38 163.7 563 30.7
Sed0010373 Sechium edule HOM05D003060 ORTHO05D001716 1.7e-37 161.8 628 30.3
Medtr1g083170 Medicago truncatula HOM05D003060 ORTHO05D001716 8.5e-37 159.5 602 30.9
AL3G15990 Arabidopsis lyrata HOM05D003060 ORTHO05D001716 3.2e-36 157.5 584 32.7
Migut.N01988 Erythranthe guttata HOM05D003060 ORTHO05D001716 4.2e-36 157.1 653 29.7
DCAR_022153 Daucus carota HOM05D003060 ORTHO05D001716 1.2e-35 155.6 661 31.5
Carub.0003s0471 Capsella rubella HOM05D003060 ORTHO05D001716 4.8e-32 143.7 587 30.8
Thhalv10019994m.g Eutrema salsugineum HOM05D003060 ORTHO05D001716 2.4e-31 141.4 603 30.5
CARHR079770 Cardamine hirsuta HOM05D003060 ORTHO05D001716 1.2e-30 139.0 577 30.5
SalBow3G3371 Salvia bowleyana HOM05D003060 ORTHO05D001716 1.2e-30 139.0 688 28.5
QL06p008666 Quercus lobata HOM05D003060 ORTHO05D001716 2.0e-30 138.3 585 30.4
Haze_01221 Corylus avellana HOM05D003060 ORTHO05D001716 4.5e-30 137.1 598 27.8
AT3G05430 Arabidopsis thaliana HOM05D003060 ORTHO05D001716 1.3e-29 135.6 580 30.3
Dinv44390 Davidia involucrata HOM05D003060 ORTHO05D001716 1.4e-26 125.6 488 30.5
SGA_v2.0_scaffold80G25802 Striga asiatica HOM05D003060 ORTHO05D001716 1.4e-26 125.6 579 29.7
SalBow7G2475 Salvia bowleyana HOM05D003060 ORTHO05D001716 4.0e-26 124.0 573 28.4
HanXRQChr14g0433331 Helianthus annuus HOM05D003060 ORTHO05D001716 2.0e-25 121.7 489 29.7
unitig_746.g26861 Utricularia gibba HOM05D003060 ORTHO05D001716 1.4e-23 115.5 349 33.8
SGA_v2.0_scaffold98G29313 Striga asiatica HOM05D003060 ORTHO05D001716 9.1e-23 112.8 520 29.0
HPP92_016933 Vanilla planifolia HOM05D003060 ORTHO05D001716 9.1e-23 112.8 570 28.2
Aa31LG5G15950 Aethionema arabicum HOM05D003060 ORTHO05D001716 8.5e-21 106.3 355 31.5
unitig_899.g15593 Utricularia gibba HOM05D003060 ORTHO05D001716 2.5e-20 104.8 457 29.8
COL.COLO4_13891 Corchorus olitorius HOM05D003060 ORTHO05D001716 7.2e-20 103.2 438 27.9
SEGI_28746 Sequoiadendron giganteum HOM05D003060 ORTHO05D001716 2.1e-19 101.7 581 26.7
unitig_749.g13558 Utricularia gibba HOM05D003060 ORTHO05D001716 2.7e-19 101.3 495 28.3
Dinv30789 Davidia involucrata HOM05D003060 ORTHO05D001716 2.3e-18 98.2 199 38.2
ATR0706G064 Amborella trichopoda HOM05D003060 ORTHO05D001716 4.0e-18 97.4 639 27.2
Zm00001eb418070 Zea mays HOM05D003060 ORTHO05D001716 5.2e-18 97.1 342 31.6
CSS0023784 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 8.8e-18 96.3 407 28.5
Psat6g150200 Pisum sativum HOM05D003060 ORTHO05D001716 1.5e-17 95.5 554 25.6
Lsat_1_v5_gn_9_87360 Lactuca sativa HOM05D003060 ORTHO05D001716 2.2e-16 91.7 541 26.8
CSS0019912 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 2.8e-16 91.3 431 26.5
CSS0018788 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 2.4e-15 88.2 435 29.0
CSS0035849 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 2.4e-15 88.2 433 26.8
Ah.04g160460 Amaranthus hybridus HOM05D003060 ORTHO05D001716 3.8e-13 80.9 116 46.6
Lsat_1_v5_gn_9_87441 Lactuca sativa HOM05D003060 ORTHO05D001716 8.6e-13 79.7 594 25.6
Atru.chr4.2820 Acer truncatum HOM05D003060 ORTHO05D001716 1.5e-12 79.0 365 27.7
SEGI_40933 Sequoiadendron giganteum HOM05D003060 ORTHO05D001716 4.3e-12 77.4 515 25.4
Atru.chr4.2818 Acer truncatum HOM05D003060 ORTHO05D001716 2.1e-11 75.1 593 23.9
TWI09G1399 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 8.0e-11 73.2 449 28.1
Dinv05099 Davidia involucrata HOM05D003060 ORTHO05D001716 1.4e-10 72.4 222 30.6
Actinidia40263 Actinidia chinensis HOM05D003060 ORTHO05D001716 7.5e-09 66.6 253 30.0
CSS0034622 Camellia sinensis var. sinensis HOM05D003060 ORTHO05D001716 8.3e-08 63.2 420 24.0
Ciclev10006926m.g Citrus clementina HOM05D003060 ORTHO05D001716 1.1e-07 62.8 320 27.8
CAN.G995.6 Capsicum annuum HOM05D003060 ORTHO05D034007 1.8e-07 62.0 179 34.1
Lj6A674G26 Lonicera japonica HOM05D003060 ORTHO05D001716 4.1e-07 60.8 306 27.1
Zm00001eb354250 Zea mays HOM05D003060 ORTHO05D001716 7.0e-07 60.1 414 27.1
Lsat_1_v5_gn_3_26180 Lactuca sativa HOM05D003060 ORTHO05D001716 9.2e-07 59.7 65 44.6
Cc00_g10560 Coffea canephora HOM05D003060 ORTHO05D001716 5.9e-06 57.0 148 30.4
TWI09G0082 Tripterygium wilfordii HOM05D003060 ORTHO05D001716 7.8e-06 56.6 421 26.4


User provided reference genes

Program Settings