Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.2e-192 676.4 359 100.0
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 4.6e-184 647.9 359 96.7
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 4.1e-132 475.3 363 73.8
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 1.7e-130 469.9 351 74.6
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 7.2e-121 438.0 367 70.3
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 6.4e-93 345.1 379 56.7
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.7e-90 337.0 367 56.1
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 1.1e-89 334.3 370 56.8
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 4.3e-89 332.4 364 57.1
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.8e-87 327.0 390 52.6
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.8e-87 327.0 363 55.6
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.1e-87 326.2 390 52.6
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.1e-87 326.2 390 52.6
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 4.0e-87 325.9 357 55.5
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 5.2e-87 325.5 349 55.6
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 6.8e-87 325.1 374 55.9
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.4e-86 322.8 359 54.6
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 5.8e-86 322.0 361 55.4
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 1.7e-85 320.5 364 53.6
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 8.3e-85 318.2 361 56.8
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 4.1e-84 315.8 370 54.1
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 5.4e-84 315.5 344 54.7
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 4.6e-83 312.4 361 54.8
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 7.8e-83 311.6 366 55.5
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.7e-82 310.5 353 53.5
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.3e-82 310.1 359 53.5
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.5e-81 307.4 362 53.3
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 1.5e-81 307.4 368 51.6
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.2e-80 304.3 395 49.4
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.1e-79 301.2 364 53.8
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 1.4e-79 300.8 371 52.0
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 3.1e-79 299.7 372 54.3
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 3.1e-79 299.7 362 53.0
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 8.9e-79 298.1 363 52.3
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.2e-78 297.7 366 52.2
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 1.5e-78 297.4 350 54.9
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 1.7e-77 293.9 352 54.0
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 3.7e-77 292.7 334 57.5
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 4.9e-77 292.4 287 58.5
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 6.4e-77 292.0 368 51.4
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 8.3e-77 291.6 375 50.7
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 1.1e-76 291.2 287 58.2
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.9e-76 290.4 402 49.0
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 2.4e-76 290.0 378 50.3
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 2.4e-76 290.0 400 49.8
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 4.1e-76 289.3 371 52.0
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 7.1e-76 288.5 371 50.9
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 9.2e-76 288.1 375 50.9
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 1.2e-75 287.7 389 49.4
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.6e-75 287.3 277 58.1
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 1.6e-75 287.3 416 46.9
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.1e-75 287.0 371 50.7
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 3.5e-75 286.2 287 57.1
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 6.0e-75 285.4 360 51.1
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 7.8e-75 285.0 368 50.0
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.0e-74 284.6 343 53.1
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 1.0e-74 284.6 403 48.4
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 3.0e-74 283.1 370 50.8
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.0e-74 283.1 370 50.8
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 1.1e-73 281.2 287 57.1
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.5e-73 280.0 368 50.5
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 9.5e-73 278.1 397 47.6
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 9.5e-73 278.1 399 48.1
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 2.8e-72 276.6 397 46.3
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.8e-72 276.6 341 51.0
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 3.6e-72 276.2 366 51.1
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 6.2e-72 275.4 378 50.0
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.4e-71 273.5 373 49.9
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 4.0e-71 272.7 393 48.9
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 1.2e-70 271.2 413 46.5
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 1.5e-70 270.8 363 51.2
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 2.6e-70 270.0 337 51.0
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 1.3e-69 267.7 366 48.6
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 2.2e-69 266.9 317 53.9
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 8.4e-69 265.0 285 55.4
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 1.4e-68 264.2 383 48.8
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 3.2e-68 263.1 351 50.7
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 5.4e-68 262.3 388 46.1
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 1.6e-67 260.8 372 48.4
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 2.1e-67 260.4 447 44.5
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 2.7e-67 260.0 362 49.2
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 4.6e-67 259.2 449 44.1
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 4.6e-67 259.2 370 47.8
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 3.0e-66 256.5 458 42.4
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 3.0e-66 256.5 458 41.7
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 7.3e-65 251.9 446 43.5
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 1.3e-64 251.1 453 42.4
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 1.6e-64 250.8 453 42.4
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 3.6e-64 249.6 361 49.0
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 4.8e-64 249.2 479 41.3
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 5.3e-63 245.7 473 39.5
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 5.3e-63 245.7 354 47.2
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 5.3e-63 245.7 364 48.1
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 6.9e-63 245.4 366 46.4
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 9.0e-63 245.0 387 45.5
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 1.5e-62 244.2 343 48.7
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 2.6e-62 243.4 481 40.5
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 3.4e-62 243.0 344 48.8
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 1.1e-60 238.0 422 41.7
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 1.4e-60 237.7 326 50.0
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 3.2e-60 236.5 377 44.0
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 5.4e-60 235.7 477 39.6
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.7e-58 230.7 340 45.6
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 6.6e-58 228.8 262 52.3
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 7.3e-57 225.3 389 42.9
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 9.6e-57 224.9 319 48.6
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 8.1e-56 221.9 370 45.4
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 1.4e-55 221.1 480 38.8
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.8e-55 220.7 429 39.9
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 9.0e-55 218.4 406 41.6
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 9.9e-54 214.9 349 45.0
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 1.7e-53 214.2 412 39.8
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 8.4e-53 211.8 304 50.7
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.6e-48 197.6 394 40.4
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 6.2e-48 195.7 381 39.4
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 6.5e-45 185.7 341 43.1
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 6.5e-45 185.7 281 46.6
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 8.4e-45 185.3 368 41.8
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 1.4e-44 184.5 296 45.3
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 1.9e-44 184.1 259 48.3
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 2.7e-43 180.3 327 41.3
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 1.1e-39 168.3 344 42.7
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 2.0e-38 164.1 315 41.3
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 3.7e-32 143.3 332 39.5
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 8.2e-32 142.1 354 38.1
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 1.1e-31 141.7 111 66.7
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.2e-27 128.3 316 36.1
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.2e-24 117.5 99 64.6
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 2.0e-22 110.9 330 33.9
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 1.3e-21 108.2 368 32.6
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 1.6e-19 101.3 65 72.3
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 2.7e-19 100.5 137 41.6
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 2.7e-19 100.5 247 36.8
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 6.7e-18 95.9 61 75.4
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 4.8e-16 89.7 68 60.3
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.4e-15 87.4 71 59.2
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.2e-14 85.1 57 71.9
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 1.3e-13 81.6 64 59.4
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 1.3e-13 81.6 322 31.4
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 2.2e-13 80.9 64 57.8
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.5e-13 79.3 59 64.4
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.6e-11 74.7 83 53.0
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 2.3e-10 70.9 203 36.5
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 3.3e-09 67.0 106 46.2
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 5.7e-09 66.2 120 40.0
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.1e-07 62.0 163 35.0


User provided reference genes

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