Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62005071 Chenopodium quinoa HOM05D005874 ORTHO05D007206 2.2e-85 318.9 161 100.0
AUR62000904 Chenopodium quinoa HOM05D005874 ORTHO05D007206 5.4e-84 314.3 161 97.5
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 5.2e-71 271.2 158 82.3
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 3.2e-68 261.9 159 78.6
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 4.3e-65 251.5 161 74.5
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 1.2e-62 243.4 159 71.7
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 6.4e-61 237.7 161 68.9
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 1.4e-60 236.5 160 72.5
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 1.4e-60 236.5 160 72.5
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 3.2e-60 235.3 161 70.8
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 6.0e-59 231.1 161 67.7
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 7.8e-59 230.7 161 69.6
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 7.8e-59 230.7 161 70.8
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 3.9e-58 228.4 160 68.1
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 5.1e-58 228.0 159 69.2
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 6.6e-58 227.6 162 67.9
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 6.6e-58 227.6 160 66.9
Nn4g26084 Nelumbo nucifera HOM05D005874 ORTHO05D007206 8.7e-58 227.3 157 68.2
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 2.5e-57 225.7 161 67.1
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 9.6e-57 223.8 155 69.7
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 1.6e-56 223.0 161 66.5
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 2.1e-56 222.6 161 64.0
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 2.1e-56 222.6 161 64.6
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 2.1e-56 222.6 161 64.6
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 2.8e-56 222.2 156 71.2
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 4.8e-56 221.5 161 68.9
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 1.8e-55 219.5 161 64.0
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 1.8e-55 219.5 160 66.2
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 2.4e-55 219.2 185 62.2
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 3.1e-55 218.8 161 63.4
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 3.1e-55 218.8 157 64.3
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 4.0e-55 218.4 161 64.0
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 4.0e-55 218.4 160 65.0
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 6.9e-55 217.6 160 66.2
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 2.0e-54 216.1 160 65.6
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 2.6e-54 215.7 161 62.7
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 5.8e-54 214.5 158 66.5
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 5.8e-54 214.5 161 62.1
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 5.8e-54 214.5 160 65.0
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 5.8e-54 214.5 156 66.7
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 9.9e-54 213.8 160 66.2
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 3.8e-53 211.8 161 63.4
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 4.9e-53 211.5 159 62.3
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 6.4e-53 211.1 163 62.6
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 8.4e-53 210.7 161 63.4
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 1.1e-52 210.3 161 62.7
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 1.4e-52 209.9 156 63.5
Nitab4.5_0005924g0020 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.9e-52 209.5 161 64.6
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 2.4e-52 209.1 161 62.7
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 2.4e-52 209.1 159 63.5
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 3.2e-52 208.8 160 64.4
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 4.2e-52 208.4 161 63.4
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 4.2e-52 208.4 161 63.4
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 7.1e-52 207.6 161 62.7
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 1.6e-51 206.5 161 64.0
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 2.7e-51 205.7 162 61.7
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 3.5e-51 205.3 163 59.5
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 3.0e-50 202.2 160 61.2
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 3.9e-50 201.8 161 62.1
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 1.1e-49 200.3 147 63.9
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 3.3e-49 198.7 130 72.3
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 5.6e-49 198.0 164 58.5
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 2.1e-48 196.1 162 60.5
Duzib192G0912 Durio zibethinus HOM05D005874 ORTHO05D007206 2.4e-47 192.6 153 61.4
Duzib192G0784 Durio zibethinus HOM05D005874 ORTHO05D007206 3.1e-47 192.2 158 58.9
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 4.0e-47 191.8 160 57.5
Duzib192G0855 Durio zibethinus HOM05D005874 ORTHO05D007206 2.0e-46 189.5 154 60.4
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 4.5e-46 188.3 130 69.2
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 1.3e-45 186.8 207 48.3
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 6.4e-45 184.5 159 54.7
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 1.1e-44 183.7 159 58.5
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 1.1e-44 183.7 156 57.7
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 2.4e-44 182.6 159 55.3
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 2.4e-44 182.6 159 55.3
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 2.4e-44 182.6 159 55.3
FAN14G2574 Fragaria x ananassa HOM05D005874 ORTHO05D007206 4.2e-44 181.8 126 69.0
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 5.5e-44 181.4 159 55.3
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 9.3e-44 180.6 160 53.1
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 1.2e-43 180.3 159 54.7
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 1.2e-43 180.3 159 54.7
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 1.2e-43 180.3 137 62.0
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 2.7e-43 179.1 116 74.1
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 7.9e-43 177.6 155 58.7
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 1.0e-42 177.2 161 57.1
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 3.0e-42 175.6 155 54.8
AL3G15310 Arabidopsis lyrata HOM05D005874 ORTHO05D007206 3.9e-42 175.3 167 56.3
AT3G04970 Arabidopsis thaliana HOM05D005874 ORTHO05D007206 5.1e-42 174.9 166 57.2
Sp3g03790 Schrenkiella parvula HOM05D005874 ORTHO05D007206 1.3e-40 170.2 165 54.5
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 1.6e-40 169.9 161 52.8
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 3.7e-40 168.7 154 57.8
Ca_09385_v3 Cicer arietinum L. HOM05D005874 ORTHO05D007206 3.7e-40 168.7 131 59.5
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 4.8e-40 168.3 158 56.3
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 8.2e-40 167.5 156 51.9
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 2.4e-39 166.0 161 50.9
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 5.3e-39 164.9 154 55.2
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 6.9e-39 164.5 109 72.5
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 9.0e-39 164.1 149 55.7
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 1.2e-38 163.7 146 55.5
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 3.4e-38 162.2 149 56.4
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 7.6e-38 161.0 149 56.4
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 1.4e-36 156.8 161 52.2
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 3.5e-35 152.1 161 49.7
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 4.6e-35 151.8 155 52.9
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 7.9e-35 151.0 155 52.9
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 5.1e-34 148.3 120 61.7
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 6.3e-32 141.4 161 46.0
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 9.0e-31 137.5 192 42.7
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 4.5e-30 135.2 147 50.3
SEGI_36862 Sequoiadendron giganteum HOM05D005874 ORTHO05D007206 1.1e-28 130.6 177 39.5
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 7.2e-28 127.9 150 46.0
QL03p003187 Quercus lobata HOM05D005874 ORTHO05D007206 1.6e-27 126.7 100 65.0
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 1.8e-23 113.2 67 79.1
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 1.8e-23 113.2 67 80.6
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 4.1e-23 112.1 161 42.2
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 9.4e-20 100.9 154 37.7
Pp3c9_17640 Physcomitrium patens HOM05D005874 ORTHO05D007206 1.7e-16 90.1 158 34.2
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 2.2e-16 89.7 66 66.7
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 3.1e-15 85.9 161 37.3
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 3.1e-07 59.3 81 39.5
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 1.6e-06 57.0 47 55.3


User provided reference genes

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