Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 2359.7 1202 100.0
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 2046.6 1134 92.9
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 2013.8 1202 84.1
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1915.2 1202 80.8
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1834.3 1206 76.9
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1802.7 1208 75.6
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1739.9 1209 72.1
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1689.5 1209 69.7
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1682.5 1209 69.7
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1669.4 1210 68.5
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1668.3 1210 69.7
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1667.1 1210 69.3
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1664.8 1215 68.8
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1664.4 1203 69.0
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1657.9 1212 68.8
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1655.6 1205 69.0
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1652.9 1210 68.4
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1652.5 1211 68.5
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1648.3 1205 68.3
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1642.5 1203 68.7
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1637.5 1211 68.3
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1635.2 1212 68.0
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1632.8 1210 67.4
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1629.8 1207 68.0
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1629.4 1205 68.1
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1627.1 1213 67.3
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1621.7 1217 67.1
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1620.9 1202 67.8
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1619.0 1211 67.2
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1618.6 1209 67.8
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1617.8 1207 67.9
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1614.0 1204 66.6
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1607.8 1203 67.4
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1607.4 1203 67.5
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1605.9 1205 67.2
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1605.1 1201 68.9
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1604.7 1203 67.3
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1603.2 1213 66.8
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1602.4 1212 66.3
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1599.7 1210 66.5
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1597.0 1203 66.6
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1597.0 1209 65.3
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1595.1 1217 65.2
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1594.3 1203 66.5
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1593.6 1186 67.4
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1590.5 1213 66.6
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1590.1 1208 66.6
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1589.3 1203 66.3
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1584.7 1171 67.8
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1575.8 1202 65.9
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1573.1 1204 65.1
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1572.4 1207 64.5
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1569.7 1205 64.1
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1568.9 1204 64.5
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1562.0 1208 64.9
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1560.8 1210 64.2
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1558.5 1214 65.4
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1556.2 1208 63.9
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1553.9 1208 63.8
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1553.9 1208 63.8
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1552.3 1205 63.8
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1550.0 1205 63.8
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1549.6 1201 64.8
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1544.6 1204 64.5
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1543.5 1200 64.0
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1541.9 1168 66.1
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1541.9 1203 64.7
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1541.6 1202 64.5
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1538.1 1209 64.4
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1536.5 1205 64.9
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1534.2 1209 63.1
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1533.5 1208 64.7
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1526.5 1169 64.8
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1523.5 1208 63.7
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1520.8 1205 64.6
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1517.3 1203 64.7
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1515.0 1201 64.4
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1511.1 1196 63.5
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1508.8 1218 62.5
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1505.0 1198 63.9
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1494.6 1206 62.6
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1494.6 1182 64.0
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1487.6 1192 62.3
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1484.2 1120 66.1
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1483.4 1180 63.1
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1470.7 1192 62.1
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1467.6 1192 61.8
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1463.4 1207 63.1
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1450.6 1207 61.6
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1442.2 1258 59.9
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1387.1 982 71.7
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1380.5 1211 59.0
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1350.1 1138 60.1
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1342.4 1208 58.6
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1342.4 1291 56.5
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1332.0 1019 63.9
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1330.5 1183 57.7
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1301.2 1209 56.1
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1298.9 1204 55.6
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1269.6 1219 55.1
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1225.7 1049 60.8
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1140.2 806 71.3
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1120.5 890 62.6
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1083.9 965 59.4
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 8.4e-307 1057.4 836 64.1
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 1.2e-289 1000.3 1149 48.7
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 7.4e-263 911.4 1244 42.3
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.0e-259 901.0 1249 43.5
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.2e-259 899.8 1244 41.6
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 5.9e-252 875.2 632 69.6
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 3.2e-237 826.2 1188 42.6
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 2.0e-231 807.0 1176 42.4
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 2.9e-230 803.1 1180 41.5
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 3.0e-227 793.1 1210 38.7
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 8.6e-227 791.6 1180 41.1
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 1.5e-218 764.2 990 45.9
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 5.4e-213 745.7 797 51.2
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 5.4e-205 719.2 1212 36.1
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.9e-197 694.1 603 61.5
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.1e-184 650.2 570 57.2
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.7e-178 629.4 639 51.8
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.3e-170 603.6 539 55.8
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 2.1e-156 557.8 493 62.1
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 3.9e-155 553.5 416 65.4
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.0e-134 485.7 488 52.3
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 2.4e-120 438.0 321 67.6
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 8.1e-108 396.4 297 66.3
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 4.9e-81 307.4 1402 23.8
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 3.3e-77 294.7 269 52.4
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 2.0e-74 285.4 210 65.2
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 4.5e-74 284.3 210 65.2
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 4.2e-64 251.1 187 69.0
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 6.7e-54 217.2 215 54.4
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 3.7e-52 211.5 503 29.6
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 9.1e-51 206.8 473 31.7
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.2e-39 169.9 108 75.0
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 9.4e-24 117.1 95 63.2
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.0e-21 109.4 560 25.0
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 5.9e-18 97.8 75 62.7
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 1.9e-16 92.8 90 53.3
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 1.0e-14 87.0 73 61.6
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 8.8e-14 84.0 63 66.7
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 2.0e-13 82.8 208 26.9
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 1.3e-12 80.1 50 84.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 1.3e-12 80.1 50 84.0
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 3.7e-12 78.6 79 49.4
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 3.7e-12 78.6 78 55.1
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 2.0e-10 72.8 72 47.2
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 3.5e-10 72.0 74 51.4
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 5.9e-10 71.2 74 52.7
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 5.9e-10 71.2 72 48.6
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.0e-09 70.5 71 52.1
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 3.8e-09 68.6 337 23.7
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 1.1e-08 67.0 172 34.3
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 7.3e-08 64.3 182 27.5
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 2.1e-07 62.8 58 58.6
Sabra13G0031800 Salix brachista HOM05D004384 ORTHO05D037489 5.2e-06 58.2 108 36.1


User provided reference genes

Program Settings