Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 5.0e-88 328.2 171 100.0
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.6e-65 253.4 171 81.3
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 4.6e-65 251.9 218 64.2
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 6.4e-43 178.3 206 52.9
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 3.2e-42 176.0 206 53.4
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 4.2e-42 175.6 171 59.6
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 5.4e-42 175.3 214 52.8
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 7.1e-42 174.9 213 53.1
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 2.1e-41 173.3 205 54.1
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 2.1e-41 173.3 199 55.3
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 2.7e-41 172.9 217 52.5
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 6.0e-41 171.8 211 53.1
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 1.0e-40 171.0 206 53.9
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 1.0e-40 171.0 206 53.4
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 1.9e-39 166.8 210 51.4
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 3.3e-39 166.0 205 52.7
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 3.3e-39 166.0 202 54.5
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 5.6e-39 165.2 212 51.9
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 5.6e-39 165.2 202 52.5
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 5.6e-39 165.2 210 49.5
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 9.6e-39 164.5 212 49.5
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 2.1e-38 163.3 198 53.0
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 2.8e-38 162.9 201 49.8
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 2.8e-38 162.9 202 53.0
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 3.6e-38 162.5 205 50.7
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 3.6e-38 162.5 213 51.2
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 4.8e-38 162.2 208 50.0
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 6.2e-38 161.8 210 48.6
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 8.1e-38 161.4 208 53.8
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 1.1e-37 161.0 208 50.5
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.1e-37 161.0 212 48.1
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 1.4e-37 160.6 208 48.1
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.8e-37 160.2 204 54.9
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.4e-37 159.8 200 53.5
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.4e-37 159.8 212 50.5
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 3.1e-37 159.5 238 47.1
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 4.0e-37 159.1 202 52.0
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 4.0e-37 159.1 208 48.6
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 5.3e-37 158.7 201 49.8
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 6.9e-37 158.3 206 49.5
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 1.2e-36 157.5 208 50.0
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 1.2e-36 157.5 197 51.3
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 1.5e-36 157.1 208 48.6
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 2.6e-36 156.4 210 49.5
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 3.4e-36 156.0 202 50.5
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 3.4e-36 156.0 213 52.1
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 5.8e-36 155.2 204 47.1
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 7.6e-36 154.8 205 48.8
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.3e-35 154.1 208 49.5
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 1.3e-35 154.1 199 50.3
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.3e-35 154.1 210 47.6
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.2e-35 153.3 208 48.6
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 2.2e-35 153.3 199 50.3
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.8e-35 152.5 208 47.1
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 3.8e-35 152.5 213 49.8
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 8.4e-35 151.4 239 44.4
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 8.4e-35 151.4 208 49.0
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 8.4e-35 151.4 193 51.3
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 1.1e-34 151.0 204 50.5
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.4e-34 150.6 211 48.8
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 1.4e-34 150.6 207 46.9
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 1.4e-34 150.6 200 52.0
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 1.4e-34 150.6 211 49.3
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 2.4e-34 149.8 202 48.5
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 9.3e-34 147.9 198 50.0
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 1.2e-33 147.5 242 43.8
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 1.6e-33 147.1 204 49.5
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 2.1e-33 146.7 210 46.7
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 2.7e-33 146.4 242 44.6
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 4.6e-33 145.6 256 41.0
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 6.0e-33 145.2 242 44.2
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 1.0e-32 144.4 191 49.2
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.8e-32 143.7 210 47.1
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 3.0e-32 142.9 247 40.1
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 8.7e-32 141.4 205 47.8
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 1.1e-31 141.0 188 50.0
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 1.5e-31 140.6 209 48.8
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 1.9e-31 140.2 218 44.5
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 3.3e-31 139.4 199 46.7
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 5.6e-31 138.7 254 38.2
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 5.6e-31 138.7 208 45.7
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 7.4e-31 138.3 151 57.6
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 3.7e-30 136.0 254 40.6
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 3.7e-30 136.0 247 39.7
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 4.8e-30 135.6 198 43.9
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 1.1e-29 134.4 201 46.8
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 1.8e-29 133.7 248 41.1
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 2.4e-29 133.3 201 45.8
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 3.1e-29 132.9 204 45.6
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 6.9e-29 131.7 192 44.3
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 9.0e-29 131.3 200 46.0
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 9.0e-29 131.3 191 47.6
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 9.0e-29 131.3 192 45.8
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 1.5e-28 130.6 113 68.1
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.5e-28 130.6 208 42.3
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 2.6e-28 129.8 203 44.3
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 3.4e-28 129.4 198 47.0
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.3e-27 127.5 182 45.6
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.9e-27 126.3 220 40.0
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 3.8e-27 125.9 134 59.0
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 8.4e-27 124.8 165 48.5
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-26 124.0 213 43.2
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.9e-26 123.6 153 51.6
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 1.9e-26 123.6 114 63.2
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 2.5e-26 123.2 275 36.4
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 4.2e-26 122.5 215 42.8
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 4.2e-26 122.5 215 42.8
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 9.3e-26 121.3 199 43.2
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 1.2e-25 120.9 171 46.2
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 7.9e-25 118.2 86 69.8
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 1.0e-24 117.9 251 36.3
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 1.3e-24 117.5 194 45.9
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 1.3e-24 117.5 173 45.7
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 1.8e-24 117.1 194 41.8
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 3.0e-24 116.3 194 43.3
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 9.6e-23 111.3 232 37.5
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 1.1e-21 107.8 136 47.8
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 1.8e-21 107.1 198 41.9
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 1.8e-21 107.1 198 41.9
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 4.1e-21 105.9 86 66.3
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 9.0e-21 104.8 85 70.6
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 1.2e-20 104.4 178 38.8
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 2.0e-20 103.6 73 67.1
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.0e-19 101.3 207 39.1
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.1e-18 97.8 200 43.0
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 2.5e-18 96.7 177 37.9
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 4.2e-18 95.9 244 33.2
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 3.6e-17 92.8 146 44.5
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 6.1e-17 92.0 171 38.0
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 7.9e-17 91.7 222 32.0
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 7.9e-17 91.7 222 32.0
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-16 90.9 160 43.1
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 5.1e-16 89.0 216 37.0
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 6.7e-16 88.6 161 41.6
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 8.7e-16 88.2 58 74.1
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-15 87.4 63 68.3
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-15 87.4 63 68.3
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-15 87.4 63 68.3
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-15 87.4 63 68.3
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 3.3e-15 86.3 206 37.9
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 5.7e-15 85.5 56 75.0
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-14 84.0 56 73.2
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-14 84.0 75 56.0
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 3.7e-14 82.8 75 58.7
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 4.8e-14 82.4 227 31.3
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 2.4e-13 80.1 159 40.9
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 7.7e-12 75.1 54 70.4
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.3e-11 74.3 51 74.5
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 2.9e-11 73.2 142 44.4
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 6.5e-11 72.0 171 40.4
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 1.4e-10 70.9 171 40.4
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 1.9e-10 70.5 46 73.9
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 1.9e-10 70.5 46 73.9
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 5.5e-10 68.9 51 70.6
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 5.5e-10 68.9 151 41.7
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 1.2e-09 67.8 131 43.5
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 2.1e-09 67.0 154 36.4
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 7.9e-09 65.1 141 34.8
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.3e-06 57.8 146 37.0
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 1.7e-06 57.4 135 34.1
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.8e-06 56.6 90 44.4


User provided reference genes

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