Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 2.7e-62 241.9 127 100.0
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 3.5e-62 241.5 127 99.2
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 9.2e-55 216.9 124 90.3
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 3.5e-54 214.9 127 87.4
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 7.8e-54 213.8 127 89.0
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 5.6e-52 207.6 127 85.8
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 7.3e-52 207.2 127 84.3
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 2.1e-51 205.7 127 85.0
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 4.7e-51 204.5 128 85.2
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 4.7e-51 204.5 128 85.2
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.4e-50 203.0 128 84.4
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 2.4e-50 202.2 128 83.6
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 3.1e-50 201.8 127 83.5
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 3.1e-50 201.8 127 81.9
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 4.0e-50 201.4 127 83.5
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 5.2e-50 201.1 127 82.7
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 6.9e-50 200.7 127 81.9
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 6.9e-50 200.7 127 81.9
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 9.0e-50 200.3 127 81.9
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 1.2e-49 199.9 122 85.2
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 2.0e-49 199.1 127 81.1
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 2.6e-49 198.7 127 81.1
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 2.6e-49 198.7 122 84.4
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 2.6e-49 198.7 127 80.3
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 3.4e-49 198.4 127 81.1
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 3.4e-49 198.4 127 81.1
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 4.4e-49 198.0 127 79.5
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 5.8e-49 197.6 128 82.8
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 7.6e-49 197.2 124 82.3
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 7.6e-49 197.2 127 80.3
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 1.7e-48 196.1 127 79.5
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 1.7e-48 196.1 127 80.3
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 2.2e-48 195.7 127 78.7
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 2.9e-48 195.3 129 79.1
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 3.8e-48 194.9 127 78.7
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 3.8e-48 194.9 127 79.5
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 3.8e-48 194.9 126 80.2
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 3.8e-48 194.9 127 81.9
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 4.9e-48 194.5 127 80.3
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 4.9e-48 194.5 129 78.3
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 4.9e-48 194.5 127 78.7
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 6.4e-48 194.1 127 79.5
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 6.4e-48 194.1 127 79.5
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 6.4e-48 194.1 127 79.5
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 6.4e-48 194.1 127 78.0
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 6.4e-48 194.1 129 78.3
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.1e-47 193.4 127 80.3
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 1.1e-47 193.4 127 79.5
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 1.4e-47 193.0 127 78.7
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 1.9e-47 192.6 127 78.7
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.9e-47 192.6 127 78.0
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 1.9e-47 192.6 127 77.2
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 2.4e-47 192.2 129 79.8
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 2.4e-47 192.2 123 79.7
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 2.4e-47 192.2 128 78.9
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.4e-47 192.2 127 78.7
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 2.4e-47 192.2 127 78.7
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 2.4e-47 192.2 126 77.8
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 3.2e-47 191.8 127 78.0
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.2e-47 191.8 127 78.7
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 5.4e-47 191.0 127 77.2
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 7.1e-47 190.7 125 80.0
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 9.3e-47 190.3 125 78.4
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 1.2e-46 189.9 128 77.3
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 1.6e-46 189.5 123 77.2
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 2.1e-46 189.1 123 77.2
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 2.1e-46 189.1 129 76.0
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 3.5e-46 188.3 129 76.7
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 4.6e-46 188.0 127 76.4
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 4.6e-46 188.0 125 76.0
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 4.6e-46 188.0 127 77.2
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 6.0e-46 187.6 128 75.8
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 7.8e-46 187.2 126 75.4
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 7.8e-46 187.2 126 77.0
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 7.8e-46 187.2 129 76.0
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 1.0e-45 186.8 131 74.0
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 1.0e-45 186.8 131 74.0
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 1.3e-45 186.4 129 76.0
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 1.7e-45 186.0 127 75.6
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 2.3e-45 185.7 126 73.8
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 3.0e-45 185.3 129 76.0
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 3.0e-45 185.3 127 74.0
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 3.9e-45 184.9 125 76.0
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 5.1e-45 184.5 126 77.0
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 6.6e-45 184.1 124 75.8
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 6.6e-45 184.1 124 76.6
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 6.6e-45 184.1 127 75.6
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 1.1e-44 183.3 126 75.4
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 1.1e-44 183.3 129 76.0
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 1.9e-44 182.6 128 75.0
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 1.9e-44 182.6 129 72.1
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 2.5e-44 182.2 118 78.0
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 3.3e-44 181.8 127 73.2
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 5.6e-44 181.0 118 77.1
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 5.6e-44 181.0 118 78.0
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 5.6e-44 181.0 126 73.8
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 9.6e-44 180.3 127 74.8
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 1.6e-43 179.5 128 74.2
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 2.1e-43 179.1 126 73.0
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 4.8e-43 177.9 126 73.8
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 8.1e-43 177.2 123 74.8
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 9.0e-42 173.7 127 72.4
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 2.0e-41 172.6 127 71.7
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 4.5e-41 171.4 148 62.8
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 8.4e-40 167.2 127 69.3
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 1.4e-39 166.4 129 69.8
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 3.2e-39 165.2 129 69.8
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 3.2e-39 165.2 129 69.8
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 9.3e-39 163.7 127 70.1
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 1.8e-37 159.5 127 68.5
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 1.8e-37 159.5 127 66.9
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 6.7e-37 157.5 127 67.7
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 7.4e-36 154.1 127 64.6
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 1.8e-34 149.4 127 63.8
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 1.8e-34 149.4 127 63.0
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 5.3e-34 147.9 127 61.4
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 2.0e-33 146.0 154 56.5
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 1.4e-31 139.8 127 59.1
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 3.2e-31 138.7 90 80.0
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 1.6e-30 136.3 127 58.3
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 1.1e-28 130.2 84 82.1
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 2.5e-28 129.0 84 81.0
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 7.4e-28 127.5 133 54.9
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 4.8e-27 124.8 86 72.1
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 1.5e-25 119.8 84 71.4
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 3.9e-21 105.1 120 46.7
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 4.5e-17 91.7 121 45.5
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 4.5e-17 91.7 121 43.8
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 2.2e-16 89.4 61 75.4
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 4.8e-11 71.6 43 83.7
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 4.5e-09 65.1 55 61.8
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 7.7e-09 64.3 40 75.0
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 3.8e-08 62.0 50 64.0
Cfa022668 Carpinus fangiana HOM05D013358 ORTHO05D124219 1.2e-06 57.0 121 33.9


User provided reference genes

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