Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.1e-190 668.3 336 100.0
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 4.9e-180 634.4 336 94.9
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 8.4e-164 580.5 333 84.7
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 8.4e-164 580.5 329 83.6
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 1.0e-156 557.0 336 79.8
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 1.9e-152 542.7 336 78.0
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.1e-144 516.9 337 73.6
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 2.2e-143 512.7 335 71.3
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 4.8e-143 511.5 336 71.1
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 6.3e-143 511.1 335 74.6
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 1.1e-142 510.4 337 71.5
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 1.4e-142 510.0 335 72.5
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 4.1e-142 508.4 333 71.5
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 5.3e-142 508.1 336 71.4
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 9.1e-142 507.3 336 70.2
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 9.1e-142 507.3 336 71.1
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.2e-141 506.9 336 70.2
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 4.5e-141 505.0 336 72.0
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 4.5e-141 505.0 337 71.5
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 4.5e-141 505.0 336 70.2
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 5.9e-141 504.6 337 71.2
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 7.7e-141 504.2 332 72.6
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 1.3e-140 503.4 335 71.9
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 1.3e-140 503.4 335 71.9
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 1.7e-140 503.1 337 72.1
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 6.5e-140 501.1 337 71.2
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 6.5e-140 501.1 336 71.7
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 1.9e-139 499.6 331 70.7
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 2.5e-139 499.2 337 69.4
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 5.5e-139 498.0 337 70.0
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 5.5e-139 498.0 338 69.5
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.2e-138 496.9 337 70.9
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 1.6e-138 496.5 338 68.6
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 1.6e-138 496.5 337 70.0
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 2.1e-138 496.1 335 69.9
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 2.1e-138 496.1 329 71.7
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 2.7e-138 495.7 337 69.1
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 4.7e-138 495.0 336 69.0
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 7.9e-138 494.2 337 70.3
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 6.7e-137 491.1 337 70.0
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 1.1e-136 490.3 335 69.6
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 2.0e-136 489.6 336 69.6
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 2.0e-136 489.6 336 67.6
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.6e-136 489.2 337 69.7
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 5.7e-136 488.0 337 69.4
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 1.3e-135 486.9 336 70.5
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 1.7e-135 486.5 337 70.0
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 3.7e-135 485.3 328 71.0
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 6.3e-135 484.6 339 67.0
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 5.3e-134 481.5 334 69.5
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 9.1e-134 480.7 333 68.5
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 9.1e-134 480.7 339 68.1
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 1.5e-133 479.9 337 66.8
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 1.5e-133 479.9 337 67.1
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 5.9e-133 478.0 336 66.7
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.0e-132 477.2 339 67.6
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 1.3e-132 476.9 336 67.9
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 2.2e-132 476.1 337 68.2
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 2.2e-132 476.1 337 68.2
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 2.9e-132 475.7 334 67.7
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 3.8e-132 475.3 334 67.7
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 3.8e-132 475.3 336 67.9
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 1.4e-131 473.4 332 65.4
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 1.4e-131 473.4 336 67.6
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 5.5e-131 471.5 337 66.2
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 5.5e-131 471.5 334 68.9
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 7.2e-131 471.1 339 67.8
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 9.4e-131 470.7 333 71.2
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 2.7e-130 469.2 341 69.2
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 3.6e-130 468.8 329 65.3
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 3.6e-130 468.8 332 66.9
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 6.1e-130 468.0 337 66.8
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 1.0e-129 467.2 346 65.0
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 1.4e-129 466.8 335 66.6
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 1.4e-129 466.8 338 66.0
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 3.9e-129 465.3 338 66.9
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 3.9e-129 465.3 329 65.0
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 8.8e-129 464.2 337 66.5
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 8.8e-129 464.2 337 66.5
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 2.0e-128 463.0 334 66.5
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 2.0e-128 463.0 338 65.4
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 9.7e-128 460.7 338 66.3
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 1.7e-127 459.9 330 64.8
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.8e-127 459.1 337 65.9
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 4.1e-126 455.3 344 65.7
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 2.6e-125 452.6 336 64.9
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 1.0e-124 450.7 337 66.5
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 1.3e-124 450.3 328 64.9
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 8.5e-124 447.6 312 67.3
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.5e-123 446.8 332 67.2
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.9e-123 446.4 334 65.9
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 9.4e-123 444.1 337 64.7
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 2.1e-122 443.0 333 66.4
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 1.0e-121 440.7 337 61.7
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 1.8e-121 439.9 339 65.8
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 2.3e-121 439.5 334 64.7
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 2.2e-119 433.0 329 61.7
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 3.1e-118 429.1 336 63.1
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 5.3e-118 428.3 328 61.6
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 5.3e-118 428.3 337 61.4
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.0e-116 424.1 337 59.9
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 8.5e-116 421.0 334 60.2
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 2.1e-114 416.4 336 59.8
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 5.2e-113 411.8 336 58.6
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 1.5e-112 410.2 335 58.8
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 1.7e-111 406.8 328 61.9
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 6.3e-111 404.8 327 57.2
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 8.3e-111 404.4 327 56.9
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 1.2e-109 400.6 328 59.8
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 4.5e-109 398.7 377 55.4
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 5.9e-109 398.3 321 60.1
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.3e-108 397.1 328 60.1
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 2.9e-108 396.0 331 60.4
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 1.9e-107 393.3 328 62.8
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 1.2e-106 390.6 289 64.7
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 8.0e-106 387.9 249 75.1
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 3.0e-105 386.0 314 58.9
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 8.9e-105 384.4 287 63.8
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 1.2e-96 357.5 260 69.6
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.9e-86 323.6 344 48.8
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 1.9e-83 313.5 349 48.4
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 7.3e-83 311.6 385 46.2
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 1.4e-81 307.4 334 49.7
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 1.8e-81 307.0 339 50.4
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 5.2e-81 305.4 218 69.7
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 4.4e-80 302.4 276 54.0
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 5.8e-80 302.0 209 68.4
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 1.0e-76 291.2 408 41.4
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 1.5e-75 287.3 314 49.4
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 2.1e-74 283.5 274 53.6
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.8e-73 280.4 194 70.6
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 1.2e-69 267.7 250 53.2
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 1.7e-63 247.3 183 61.2
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 5.8e-56 222.2 184 56.0
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 2.4e-49 200.3 155 61.9
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 1.0e-47 194.9 376 34.0
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 6.7e-44 182.2 248 42.3
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 5.7e-43 179.1 338 37.3
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.4e-41 174.5 143 58.0
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 2.6e-40 170.2 134 61.2
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 1.0e-39 168.3 155 54.2
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 3.9e-36 156.4 137 55.5
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 3.9e-36 156.4 137 55.5
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 2.5e-27 127.1 76 75.0
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 2.2e-26 124.0 152 44.7
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 2.4e-25 120.6 109 57.8
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 4.1e-25 119.8 90 58.9
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 5.1e-20 102.8 271 29.5
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 5.9e-16 89.4 76 52.6
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 2.9e-15 87.0 67 59.7
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 6.1e-13 79.3 67 56.7
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 6.1e-13 79.3 49 69.4
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 7.0e-09 65.9 47 72.3
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 1.2e-08 65.1 59 55.9
DCAR_004803 Daucus carota HOM05D019807 ORTHO05D005566 3.8e-07 60.1 34 79.4
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 4.2e-06 56.6 66 43.9


User provided reference genes

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