Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 8.9e-47 189.9 93 100.0
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.4e-44 181.8 93 95.7
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 1.0e-42 176.4 91 93.4
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 3.3e-41 171.4 88 92.0
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 3.6e-40 167.9 89 88.8
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 8.0e-40 166.8 91 85.7
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 2.3e-39 165.2 84 91.7
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 4.0e-39 164.5 91 83.5
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 6.8e-39 163.7 85 90.6
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 6.8e-39 163.7 85 90.6
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 6.8e-39 163.7 89 87.6
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 6.8e-39 163.7 89 87.6
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 8.9e-39 163.3 91 84.6
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 1.2e-38 162.9 89 86.5
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 1.2e-38 162.9 91 84.6
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 1.5e-38 162.5 91 85.7
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 1.5e-38 162.5 91 82.4
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 2.0e-38 162.2 91 84.6
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 2.0e-38 162.2 91 83.5
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 2.6e-38 161.8 85 88.2
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 2.6e-38 161.8 85 88.2
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 2.6e-38 161.8 91 84.6
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 4.4e-38 161.0 91 84.6
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 5.8e-38 160.6 89 84.3
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 5.8e-38 160.6 89 85.4
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 5.8e-38 160.6 89 86.5
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 5.8e-38 160.6 89 85.4
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 5.8e-38 160.6 91 83.5
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 7.5e-38 160.2 89 85.4
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 7.5e-38 160.2 89 85.4
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 9.8e-38 159.8 91 83.5
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 9.8e-38 159.8 85 85.9
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 9.8e-38 159.8 89 85.4
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 9.8e-38 159.8 91 82.4
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 9.8e-38 159.8 85 88.2
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 1.3e-37 159.5 85 87.1
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 2.2e-37 158.7 91 82.4
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.9e-37 158.3 79 93.7
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 2.9e-37 158.3 92 82.6
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 2.9e-37 158.3 85 87.1
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 2.9e-37 158.3 91 81.3
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 3.7e-37 157.9 93 80.6
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.7e-37 157.9 84 86.9
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.7e-37 157.9 84 86.9
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 3.7e-37 157.9 85 85.9
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 3.7e-37 157.9 84 88.1
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 3.7e-37 157.9 84 88.1
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 3.7e-37 157.9 84 88.1
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 3.7e-37 157.9 91 84.6
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 3.7e-37 157.9 80 93.8
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 4.9e-37 157.5 89 84.3
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 4.9e-37 157.5 91 83.5
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 4.9e-37 157.5 91 83.5
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 4.9e-37 157.5 91 81.3
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 4.9e-37 157.5 91 81.3
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 6.4e-37 157.1 91 83.5
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 6.4e-37 157.1 84 88.1
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 6.4e-37 157.1 92 83.7
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 6.4e-37 157.1 85 87.1
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 6.4e-37 157.1 91 82.4
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 8.3e-37 156.8 83 86.7
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 8.3e-37 156.8 89 83.1
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 1.1e-36 156.4 84 85.7
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 1.1e-36 156.4 83 86.7
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.1e-36 156.4 83 86.7
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 1.4e-36 156.0 84 85.7
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 1.4e-36 156.0 91 81.3
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.4e-36 156.0 83 86.7
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.4e-36 155.2 78 92.3
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 2.4e-36 155.2 86 81.4
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 2.4e-36 155.2 86 81.4
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.2e-36 154.8 84 84.5
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 4.1e-36 154.5 84 88.1
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 4.1e-36 154.5 84 88.1
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 4.1e-36 154.5 84 85.7
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 4.1e-36 154.5 84 85.7
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 4.1e-36 154.5 89 79.8
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 5.4e-36 154.1 85 82.4
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 5.4e-36 154.1 85 85.9
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 7.0e-36 153.7 91 80.2
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 1.2e-35 152.9 91 78.0
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 2.0e-35 152.1 112 69.6
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 3.5e-35 151.4 89 82.0
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 6.0e-35 150.6 85 83.5
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 7.8e-35 150.2 84 83.3
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 7.8e-35 150.2 85 84.7
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 1.7e-34 149.1 85 81.2
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.7e-34 149.1 92 79.3
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 2.3e-34 148.7 92 79.3
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 2.3e-34 148.7 81 82.7
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 2.3e-34 148.7 88 80.7
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 3.0e-34 148.3 85 83.5
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 3.0e-34 148.3 85 83.5
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 3.9e-34 147.9 88 78.4
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 5.0e-34 147.5 88 77.3
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 5.0e-34 147.5 85 81.2
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 6.6e-34 147.1 88 78.4
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 8.6e-34 146.7 92 78.3
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 8.6e-34 146.7 91 74.7
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 8.6e-34 146.7 93 80.6
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 8.6e-34 146.7 85 81.2
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 1.1e-33 146.4 82 82.9
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 2.5e-33 145.2 95 77.9
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 3.3e-33 144.8 85 81.2
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 4.3e-33 144.4 91 76.9
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 5.6e-33 144.1 84 82.1
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 7.3e-33 143.7 92 76.1
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 7.3e-33 143.7 78 87.2
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 1.2e-32 142.9 85 77.6
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-32 142.9 82 80.5
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-32 142.9 86 76.7
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-32 142.9 86 76.7
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 1.6e-32 142.5 92 75.0
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.8e-32 141.7 71 95.8
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 3.6e-32 141.4 78 84.6
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 4.7e-32 141.0 78 83.3
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 6.2e-32 140.6 88 75.0
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 6.2e-32 140.6 92 73.9
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 6.2e-32 140.6 92 73.9
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 6.2e-32 140.6 92 73.9
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 6.2e-32 140.6 92 73.9
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 6.2e-32 140.6 92 73.9
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 8.1e-32 140.2 85 76.5
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 8.1e-32 140.2 85 76.5
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 1.1e-31 139.8 85 76.5
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 1.1e-31 139.8 85 76.5
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 1.4e-31 139.4 70 94.3
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 1.5e-30 136.0 91 73.6
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.5e-30 136.0 71 90.1
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 1.5e-30 136.0 83 75.9
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 1.5e-30 136.0 73 87.7
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.0e-30 135.6 70 91.4
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 4.4e-30 134.4 85 74.1
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 7.5e-30 133.7 70 88.6
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 9.8e-30 133.3 76 80.3
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 1.3e-29 132.9 71 87.3
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 1.7e-29 132.5 70 87.1
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.7e-29 132.5 91 71.4
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 2.2e-29 132.1 71 88.7
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.9e-29 131.7 71 90.1
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 2.9e-29 131.7 70 87.1
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.0e-26 123.2 114 55.3
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 3.3e-25 118.2 71 80.3
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 9.5e-25 116.7 70 82.9
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 2.8e-24 115.2 71 80.3
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 4.7e-24 114.4 67 77.6
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 4.0e-23 111.3 84 64.3
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 2.2e-21 105.5 50 94.0
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 1.4e-20 102.8 86 66.3
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 1.7e-18 95.9 73 61.6
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 2.3e-18 95.5 93 53.8
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 2.3e-18 95.5 76 60.5
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 6.6e-18 94.0 89 55.1
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.4e-15 86.3 58 69.0
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.8e-15 85.9 51 74.5
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.8e-15 85.9 51 74.5
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.8e-15 85.9 51 74.5
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.8e-15 85.9 51 74.5
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 5.2e-15 84.3 49 81.6
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 4.4e-14 81.3 73 52.1
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 5.8e-14 80.9 48 79.2
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.3e-13 79.7 47 72.3
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.9e-13 78.6 49 71.4
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 7.8e-11 70.5 54 63.0
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 6.6e-10 67.4 40 77.5
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 8.7e-10 67.0 56 55.4
TWI56G0038 Tripterygium wilfordii HOM05D004240 ORTHO05D413666 2.0e-06 55.8 26 96.2


User provided reference genes

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