Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 2080.1 1066 100.0
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 2008.4 1096 94.8
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1713.4 1088 80.2
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1611.3 1094 76.4
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1545.4 1046 73.6
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1544.3 1065 73.5
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1541.2 1080 72.6
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1521.9 1116 70.3
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1517.7 1078 73.0
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1514.2 1080 71.9
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1510.4 1074 70.4
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1509.2 1047 71.8
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1508.8 1060 72.6
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1508.0 1053 72.4
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1507.3 1081 70.4
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1506.5 1061 72.3
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1505.3 1062 70.8
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1503.8 1080 71.8
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1503.0 1087 69.7
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1503.0 1075 69.9
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1500.3 1069 70.9
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1500.0 1073 69.7
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1499.6 1071 71.2
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1498.8 1077 69.9
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1498.8 1060 71.1
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1495.3 1046 72.0
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1493.0 1101 69.0
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1492.6 1079 69.3
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1491.1 1093 70.4
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1488.0 1045 71.1
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1487.2 1045 71.8
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1484.2 1077 70.4
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1483.4 1056 71.1
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1483.0 1081 70.4
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1482.2 1046 72.2
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1481.5 1056 70.3
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1481.1 1046 72.3
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1478.0 1070 70.3
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1470.7 1053 70.4
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1469.9 1060 70.5
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1469.5 1080 69.0
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1469.1 1064 69.6
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1468.0 1052 72.0
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1466.8 1080 70.5
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1464.5 1070 70.1
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1463.0 1073 70.0
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1461.8 1082 70.4
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1456.4 1074 67.5
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1456.0 1068 69.2
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1454.9 1084 67.8
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1454.9 1068 69.8
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1451.4 1071 69.7
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1451.4 1068 68.9
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1449.5 1109 67.8
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1449.5 1064 68.5
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1447.2 1067 69.7
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1445.3 1077 68.4
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1444.9 1065 69.5
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1444.1 1068 68.4
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1443.7 1076 68.0
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1443.3 1076 68.4
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1439.5 1077 68.4
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1436.0 1059 69.0
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1431.0 1066 68.9
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1429.5 1080 68.4
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1426.4 1067 67.4
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1422.5 1065 67.5
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1422.1 1069 67.7
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1421.4 1066 68.3
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1420.6 1080 66.9
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1417.9 1067 66.9
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1406.7 1067 66.5
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1404.0 1090 66.0
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1402.1 1073 68.1
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1397.9 1066 68.8
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1397.9 1079 66.4
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1394.8 1065 67.1
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1393.6 1065 68.0
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1367.8 1067 67.7
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1367.1 1206 60.6
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1356.3 1070 65.8
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 1332.8 1072 63.6
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1331.6 980 69.9
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1325.8 1072 65.8
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 1313.5 1068 62.9
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1308.9 759 86.8
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1308.1 1128 61.5
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1287.3 923 70.3
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 1276.9 1083 60.7
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1274.6 923 70.9
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1255.7 1064 60.0
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1224.5 1199 55.6
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 0.0e+00 1172.9 1044 58.7
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1118.2 1061 58.7
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 0.0e+00 1115.5 762 72.8
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1112.8 958 63.2
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 0.0e+00 1089.3 754 71.5
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 1.7e-290 1003.0 719 71.6
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 2.6e-275 952.6 1062 47.8
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 1.6e-261 906.7 1062 48.0
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 1.8e-244 850.1 1010 51.9
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.9e-238 830.1 767 57.2
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 1.3e-229 800.8 607 68.5
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 5.0e-218 762.3 994 43.9
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 4.1e-212 742.7 537 69.3
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 2.2e-186 657.1 1508 31.5
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 1.7e-181 641.0 499 64.9
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 1.3e-178 631.3 615 56.4
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 3.1e-159 567.0 402 71.4
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 6.7e-122 443.0 310 72.9
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 1.1e-71 276.2 175 77.7
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 1.5e-52 212.6 163 63.8
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 7.0e-39 167.2 99 80.8
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.2e-17 96.7 49 85.7
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 5.8e-17 94.4 58 72.4
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 3.2e-15 88.6 65 60.0
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 1.6e-11 76.3 529 20.2
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 6.2e-11 74.3 58 58.6
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 6.2e-11 74.3 58 58.6
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 5.3e-10 71.2 85 45.9
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 1.2e-09 70.1 46 69.6
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 1.2e-09 70.1 85 44.7
Pp3c22_9380 Physcomitrium patens HOM05D004929 ORTHO05D006492 1.2e-06 60.1 175 28.0


User provided reference genes

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