Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62004377 Chenopodium quinoa HOM05D005028 ORTHO05D006028 1.0e-111 406.8 202 100.0
AUR62022583 Chenopodium quinoa HOM05D005028 ORTHO05D006028 8.0e-93 344.0 176 94.9
Ah.05g180490 Amaranthus hybridus HOM05D005028 ORTHO05D006028 5.5e-86 321.2 207 78.7
EL10Ac1g00399 Beta vulgaris HOM05D005028 ORTHO05D006028 1.7e-82 309.7 209 76.6
Sc23g0002800 Simmondsia chinensis HOM05D005028 ORTHO05D006028 3.9e-63 245.4 210 62.9
Dinv32494 Davidia involucrata HOM05D005028 ORTHO05D006028 6.6e-63 244.6 199 63.3
CANSAT56G0390 Cannabis sativa HOM05D005028 ORTHO05D006028 6.2e-61 238.0 197 64.0
TWI23G0157 Tripterygium wilfordii HOM05D005028 ORTHO05D006028 1.8e-60 236.5 199 63.3
Actinidia20894 Actinidia chinensis HOM05D005028 ORTHO05D006028 5.8e-59 231.5 210 59.5
Actinidia10042 Actinidia chinensis HOM05D005028 ORTHO05D006028 9.8e-59 230.7 208 58.2
Hma1.2p1_0780F.1_g216740 Hydrangea macrophylla HOM05D005028 ORTHO05D006028 4.9e-58 228.4 216 56.5
Manes.05G033100 Manihot esculenta HOM05D005028 ORTHO05D006028 8.3e-58 227.6 206 60.2
Prupe.2G172500 Prunus persica HOM05D005028 ORTHO05D006028 8.3e-58 227.6 165 67.9
Potri.014G086200 Populus trichocarpa HOM05D005028 ORTHO05D006028 1.4e-57 226.9 188 60.6
RcHm_v2.0_Chr1g0356151 Rosa chinensis HOM05D005028 ORTHO05D006028 3.2e-57 225.7 165 64.2
FvH4_7g14630 Fragaria vesca HOM05D005028 ORTHO05D006028 4.1e-57 225.3 165 65.5
FAN06G2873 Fragaria x ananassa HOM05D005028 ORTHO05D006028 4.1e-57 225.3 165 65.5
FAN06G0569 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.2e-56 223.8 165 64.8
FAN10G3452 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.2e-56 223.8 158 65.8
FAN03G1762 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.6e-56 223.4 158 65.8
MD01G1065300 Malus domestica HOM05D005028 ORTHO05D006028 1.6e-56 223.4 165 66.1
FAN01G1655 Fragaria x ananassa HOM05D005028 ORTHO05D006028 2.1e-56 223.0 165 64.8
FAN10G4091 Fragaria x ananassa HOM05D005028 ORTHO05D006028 3.5e-56 222.2 158 65.2
ClCG05G001460 Citrullus lanatus HOM05D005028 ORTHO05D006028 4.6e-56 221.9 163 65.0
Nn1g01568 Nelumbo nucifera HOM05D005028 ORTHO05D006028 6.0e-56 221.5 206 57.3
GSVIVG01026950001 Vitis vinifera HOM05D005028 ORTHO05D006028 6.0e-56 221.5 211 55.9
MELO3C006103.2 Cucumis melo HOM05D005028 ORTHO05D006028 7.8e-56 221.1 163 64.4
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 1.0e-55 220.7 163 63.8
Atru.chr5.513 Acer truncatum HOM05D005028 ORTHO05D006028 1.3e-55 220.3 206 58.7
PSO210G4593 Papaver somniferum HOM05D005028 ORTHO05D006028 1.7e-55 219.9 186 60.2
Cfa003905 Carpinus fangiana HOM05D005028 ORTHO05D006028 6.6e-55 218.0 190 58.9
TAR374G1129 Trochodendron aralioides HOM05D005028 ORTHO05D006028 6.6e-55 218.0 188 59.0
Cc02_g38190 Coffea canephora HOM05D005028 ORTHO05D006028 1.1e-54 217.2 193 57.0
Duzib138G1785 Durio zibethinus HOM05D005028 ORTHO05D006028 1.1e-54 217.2 195 56.9
Thecc.01G357500 Theobroma cacao HOM05D005028 ORTHO05D006028 1.5e-54 216.9 195 59.0
QL04p053913 Quercus lobata HOM05D005028 ORTHO05D006028 1.9e-54 216.5 183 59.6
Haze_15525 Corylus avellana HOM05D005028 ORTHO05D006028 2.5e-54 216.1 190 57.9
Lalb_Chr04g0253811 Lupinus albus HOM05D005028 ORTHO05D006028 3.3e-54 215.7 204 54.9
PSO832G0747 Papaver somniferum HOM05D005028 ORTHO05D006028 3.3e-54 215.7 186 59.7
vmacro13267 Vaccinium macrocarpon HOM05D005028 ORTHO05D006028 4.3e-54 215.3 213 55.4
Lj1g0018179 Lotus japonicus HOM05D005028 ORTHO05D006028 5.6e-54 214.9 197 55.3
ECA234G2903 Erigeron canadensis HOM05D005028 ORTHO05D006028 7.3e-54 214.5 197 55.8
Sabra14G0062500 Salix brachista HOM05D005028 ORTHO05D006028 9.5e-54 214.2 205 57.6
MD07G1135200 Malus domestica HOM05D005028 ORTHO05D006028 4.7e-53 211.8 165 63.0
THA.LOC104802036 Tarenaya hassleriana HOM05D005028 ORTHO05D006028 6.2e-53 211.5 207 56.5
Phvul.008G061400 Phaseolus vulgaris HOM05D005028 ORTHO05D006028 8.1e-53 211.1 199 54.3
Sed0007874 Sechium edule HOM05D005028 ORTHO05D006028 8.1e-53 211.1 165 62.4
VMungo1383G1301 Vigna mungo HOM05D005028 ORTHO05D006028 1.1e-52 210.7 190 57.4
CiPaw.02G032200 Carya illinoinensis HOM05D005028 ORTHO05D006028 2.3e-52 209.5 165 60.0
Ca_07933_v3 Cicer arietinum L. HOM05D005028 ORTHO05D006028 2.3e-52 209.5 199 55.8
Oeu052955.1 Olea europaea HOM05D005028 ORTHO05D006028 2.3e-52 209.5 196 55.6
TAR375G0288 Trochodendron aralioides HOM05D005028 ORTHO05D006028 2.3e-52 209.5 208 54.8
Lj7A510T39 Lonicera japonica HOM05D005028 ORTHO05D006028 3.1e-52 209.1 207 53.6
HanXRQChr16g0522391 Helianthus annuus HOM05D005028 ORTHO05D006028 4.0e-52 208.8 183 55.7
Peaxi162Scf00008g02424 Petunia axillaris HOM05D005028 ORTHO05D006028 5.2e-52 208.4 191 56.5
Psat3g107720 Pisum sativum HOM05D005028 ORTHO05D006028 5.2e-52 208.4 191 54.5
Solyc10g012400.3 Solanum lycopersicum HOM05D005028 ORTHO05D006028 5.2e-52 208.4 156 60.3
Haze_01381 Corylus avellana HOM05D005028 ORTHO05D006028 6.8e-52 208.0 156 62.2
Nitab4.5_0002811g0020 Nicotiana tabacum HOM05D005028 ORTHO05D006028 2.6e-51 206.1 193 54.9
Lsat_1_v5_gn_4_35880 Lactuca sativa HOM05D005028 ORTHO05D006028 3.4e-51 205.7 201 51.7
Nitab4.5_0000386g0020 Nicotiana tabacum HOM05D005028 ORTHO05D006028 3.4e-51 205.7 207 53.1
Sopen10g006230 Solanum pennellii HOM05D005028 ORTHO05D006028 3.4e-51 205.7 156 59.6
arahy.Tifrunner.gnm1.ann1.US4SCG Arachis hypogaea HOM05D005028 ORTHO05D006028 4.4e-51 205.3 157 60.5
Glyma.18G234400 Glycine max HOM05D005028 ORTHO05D006028 4.4e-51 205.3 192 55.2
TPR.G37810 Trifolium pratense HOM05D005028 ORTHO05D006028 4.4e-51 205.3 203 51.2
arahy.Tifrunner.gnm1.ann1.C7F7IC Arachis hypogaea HOM05D005028 ORTHO05D006028 7.6e-51 204.5 189 54.5
CAN.G116.15 Capsicum annuum HOM05D005028 ORTHO05D006028 1.3e-50 203.8 194 53.6
Ciclev10022241m.g Citrus clementina HOM05D005028 ORTHO05D006028 1.7e-50 203.4 177 57.1
SGA_v2.0_scaffold95G28829 Striga asiatica HOM05D005028 ORTHO05D006028 1.7e-50 203.4 196 52.0
PGSC0003DMG400006503 Solanum tuberosum HOM05D005028 ORTHO05D006028 2.2e-50 203.0 156 59.0
arahy.Tifrunner.gnm1.ann1.EZF1CG Arachis hypogaea HOM05D005028 ORTHO05D006028 2.9e-50 202.6 157 59.9
MBI18_g02833_MAGBIO Magnolia biondii HOM05D005028 ORTHO05D006028 2.9e-50 202.6 179 58.7
THA.LOC104817298 Tarenaya hassleriana HOM05D005028 ORTHO05D006028 3.7e-50 202.2 207 53.1
Gohir.A07G141900 Gossypium hirsutum HOM05D005028 ORTHO05D006028 8.3e-50 201.1 198 55.1
Medtr7g077890 Medicago truncatula HOM05D005028 ORTHO05D006028 8.3e-50 201.1 197 52.3
Gohir.D07G147300 Gossypium hirsutum HOM05D005028 ORTHO05D006028 1.1e-49 200.7 198 55.1
Nitab4.5_0000583g0210 Nicotiana tabacum HOM05D005028 ORTHO05D006028 3.2e-49 199.1 183 53.0
Eucgr.E00119 Eucalyptus grandis HOM05D005028 ORTHO05D006028 1.2e-48 197.2 179 56.4
Glyma.09G258300 Glycine max HOM05D005028 ORTHO05D006028 2.1e-48 196.4 188 52.7
Nitab4.5_0006018g0040 Nicotiana tabacum HOM05D005028 ORTHO05D006028 2.1e-48 196.4 183 52.5
DCAR_007443 Daucus carota HOM05D005028 ORTHO05D006028 2.7e-48 196.1 187 56.7
PGR042G1182 Punica granatum HOM05D005028 ORTHO05D006028 2.7e-48 196.1 183 54.1
DCAR_015106 Daucus carota HOM05D005028 ORTHO05D006028 4.6e-48 195.3 191 54.5
Migut.B01770 Erythranthe guttata HOM05D005028 ORTHO05D006028 1.3e-47 193.7 178 52.2
unitig_26.g9301 Utricularia gibba HOM05D000773 ORTHO05D006028 1.7e-47 193.4 171 56.1
Cpa.g.sc11.21 Carica papaya HOM05D005028 ORTHO05D006028 6.6e-47 191.4 211 50.7
QL04p053899 Quercus lobata HOM05D005028 ORTHO05D006028 9.6e-46 187.6 157 54.1
MSTRG.20842 Avicennia marina HOM05D005028 ORTHO05D006028 2.8e-45 186.0 178 52.8
ATR0680G399 Amborella trichopoda HOM05D005028 ORTHO05D006028 6.2e-45 184.9 180 52.2
Gorai.001G168500 Gossypium raimondii HOM05D005028 ORTHO05D006028 8.1e-45 184.5 229 47.2
HPP92_025966 Vanilla planifolia HOM05D005028 ORTHO05D006028 1.5e-43 180.3 188 47.9
Rhsim07G0013700 Rhododendron simsii HOM05D005028 ORTHO05D006028 2.6e-43 179.5 206 48.5
A03p25430 Brassica napus HOM05D005028 ORTHO05D006028 4.4e-43 178.7 208 51.0
Os03g0148300 Oryza sativa ssp. japonica HOM05D005028 ORTHO05D006028 9.9e-43 177.6 174 50.6
COL.COLO4_12727 Corchorus olitorius HOM05D005028 ORTHO05D006028 4.9e-42 175.3 177 53.1
SMO203G0053 Selaginella moellendorffii HOM05D005028 ORTHO05D006028 4.9e-42 175.3 156 54.5
Aqoxy7G00275 Aquilegia oxysepala HOM05D005028 ORTHO05D006028 1.9e-41 173.3 204 49.5
Lsat_1_v5_gn_7_4161 Lactuca sativa HOM05D005028 ORTHO05D006028 4.2e-41 172.2 176 47.7
Lsat_1_v5_gn_7_18681 Lactuca sativa HOM05D005028 ORTHO05D006028 5.4e-41 171.8 180 45.6
Solyc01g094780.4 Solanum lycopersicum HOM05D005028 ORTHO05D006028 1.2e-40 170.6 175 46.9
AL4G45230 Arabidopsis lyrata HOM05D005028 ORTHO05D006028 2.7e-40 169.5 196 48.5
CDE09G1157 Ceratophyllum demersum HOM05D005028 ORTHO05D006028 4.6e-40 168.7 182 48.9
Thhalv10001635m.g Eutrema salsugineum HOM05D005028 ORTHO05D006028 4.6e-40 168.7 201 49.3
AagrBONN_evm.TU.Sc2ySwM_228.1428 Anthoceros agrestis HOM05D005028 ORTHO05D006028 7.8e-40 167.9 198 46.0
PGSC0003DMG400000176 Solanum tuberosum HOM05D005028 ORTHO05D006028 3.0e-39 166.0 175 46.3
CARHR141270 Cardamine hirsuta HOM05D005028 ORTHO05D006028 8.7e-39 164.5 172 52.3
HanXRQChr06g0170181 Helianthus annuus HOM05D005028 ORTHO05D006028 8.7e-39 164.5 189 43.4
Peaxi162Scf00020g00731 Petunia axillaris HOM05D005028 ORTHO05D006028 8.7e-39 164.5 179 49.2
Carub.0004s2870 Capsella rubella HOM05D005028 ORTHO05D006028 1.9e-38 163.3 186 51.6
C04p72030 Brassica napus HOM05D005028 ORTHO05D006028 4.3e-38 162.2 200 48.5
BolC4t28699H Brassica oleracea HOM05D005028 ORTHO05D006028 4.3e-38 162.2 200 48.5
Sp4g28070 Schrenkiella parvula HOM05D005028 ORTHO05D006028 4.3e-38 162.2 203 48.3
Aa31LG1G27410 Aethionema arabicum HOM05D005028 ORTHO05D006028 9.6e-38 161.0 208 44.2
BcaC02g12158 Brassica carinata HOM05D005028 ORTHO05D006028 1.3e-37 160.6 203 46.3
A04p34210 Brassica napus HOM05D005028 ORTHO05D006028 1.3e-37 160.6 201 46.3
BraA04t18882Z Brassica rapa HOM05D005028 ORTHO05D006028 1.3e-37 160.6 201 46.3
Zm00001eb003870 Zea mays HOM05D005028 ORTHO05D006028 1.3e-37 160.6 169 47.3
SalBow3G2695 Salvia bowleyana HOM05D005028 ORTHO05D006028 4.8e-37 158.7 170 50.0
Mapoly0023s0066 Marchantia polymorpha HOM05D005028 ORTHO05D006028 4.0e-36 155.6 190 42.1
AT2G46000 Arabidopsis thaliana HOM05D005028 ORTHO05D006028 5.3e-36 155.2 206 46.6
C03p30330 Brassica napus HOM05D005028 ORTHO05D006028 5.3e-36 155.2 178 48.9
A05p05990 Brassica napus HOM05D005028 ORTHO05D006028 6.9e-36 154.8 201 46.8
Zm00001eb402990 Zea mays HOM05D005028 ORTHO05D006028 6.9e-36 154.8 174 46.6
C04p06920 Brassica napus HOM05D005028 ORTHO05D006028 1.2e-35 154.1 195 45.6
BolC4t22313H Brassica oleracea HOM05D005028 ORTHO05D006028 1.2e-35 154.1 195 45.6
BolC3t15383H Brassica oleracea HOM05D005028 ORTHO05D006028 2.0e-35 153.3 211 46.0
BraA05t19562Z Brassica rapa HOM05D005028 ORTHO05D006028 2.0e-35 153.3 201 46.3
BcaC01g05100 Brassica carinata HOM05D005028 ORTHO05D006028 7.8e-32 141.4 148 52.7
BraA03t11762Z Brassica rapa HOM05D005028 ORTHO05D006028 1.3e-31 140.6 127 55.1
Manes.01G255500 Manihot esculenta HOM05D005028 ORTHO05D006028 3.3e-30 136.0 165 50.3
Pp3c14_2680 Physcomitrium patens HOM05D005028 ORTHO05D006028 7.3e-30 134.8 163 41.1
SEGI_06430 Sequoiadendron giganteum HOM05D005028 ORTHO05D006028 1.1e-28 131.0 140 50.0
Ciclev10006561m.g Citrus clementina HOM05D005028 ORTHO05D006028 5.3e-28 128.6 121 53.7
RcHm_v2.0_Chr1g0356451 Rosa chinensis HOM05D005028 ORTHO05D006028 2.6e-27 126.3 88 64.8
HanXRQChr04g0121191 Helianthus annuus HOM05D005028 ORTHO05D006028 1.9e-25 120.2 127 42.5
CANSAT25G0788 Cannabis sativa HOM05D005028 ORTHO05D006028 9.3e-25 117.9 88 65.9
BcaB01g03242 Brassica carinata HOM05D005028 ORTHO05D006028 4.8e-21 105.5 136 46.3
A04p17020 Brassica napus HOM05D005028 ORTHO05D006028 1.4e-20 104.0 170 38.8
BraA08t32322Z Brassica rapa HOM05D005028 ORTHO05D006028 7.6e-19 98.2 93 52.7
BcaC02g07785 Brassica carinata HOM05D005028 ORTHO05D006028 1.3e-18 97.4 88 52.3
Cfa010782 Carpinus fangiana HOM05D005028 ORTHO05D006028 4.8e-13 79.0 58 62.1
CBR_g3867 Chara braunii HOM05D005028 ORTHO05D006028 2.6e-11 73.2 132 38.6
BcaC02g08371 Brassica carinata HOM05D005028 ORTHO05D006028 7.6e-11 71.6 57 59.6
C09p26600 Brassica napus HOM05D005028 ORTHO05D006028 3.8e-10 69.3 117 38.5
Atru.chr3.1868 Acer truncatum HOM05D005028 ORTHO05D006028 1.2e-08 64.3 58 55.2
Atru.chr3.1882 Acer truncatum HOM05D005028 ORTHO05D006028 2.1e-08 63.5 57 56.1
ECA236G3403 Erigeron canadensis HOM05D005028 ORTHO05D006028 1.8e-07 60.5 75 37.3
MCO07G199 Micromonas commoda HOM05D005028 ORTHO05D006028 2.3e-07 60.1 166 25.3
Cfa015721 Carpinus fangiana HOM05D001945 ORTHO05D034171 9.7e-06 54.7 41 58.5


User provided reference genes

Program Settings